From b600bb03073b32e29a69b6288d0cc7c308ce8e44 Mon Sep 17 00:00:00 2001
From: Gregor von Laszewski <laszewski@gmail.com>
Date: Mon, 24 Jul 2023 17:57:13 -0400
Subject: [PATCH] convert config to yaml

---
 .../uno/target/rivanna/uno_fom_model.yaml     | 49 +++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 benchmarks/uno/target/rivanna/uno_fom_model.yaml

diff --git a/benchmarks/uno/target/rivanna/uno_fom_model.yaml b/benchmarks/uno/target/rivanna/uno_fom_model.yaml
new file mode 100644
index 00000000..8384f44a
--- /dev/null
+++ b/benchmarks/uno/target/rivanna/uno_fom_model.yaml
@@ -0,0 +1,49 @@
+Global_Params:
+  train_sources:
+  - 'GDSC'
+  test_sources:
+  - 'train'
+  cell_types: None
+  cell_features:
+  - 'rnaseq'
+  drug_features:
+  - 'descriptors', 'fingerprints'
+  dense:
+  - 1000
+  - 1000
+  - 1000
+  dense_feature_layers:
+  - 1000
+  - 1000
+  - 1000
+  activation: 'relu'
+  loss: 'mse'
+  optimizer: 'adam'
+  scaling: 'std'
+  dropout: 0
+  epochs: 50
+  batch_size: 512
+  val_split: 0.2
+  cv: 1
+  max_val_loss: 1.0
+  learning_rate: None
+  base_lr: None
+  residual: False
+  reduce_lr: False
+  warmup_lr: False
+  batch_normalization: False
+  feature_subsample: 0
+  rng_seed: 2018
+  save_path: 'save/uno'
+  no_gen: False
+  verbose :  False
+  use_landmark_genes: True
+  preprocess_rnaseq: 'source_scale'
+  no_feature_source: True
+  no_response_source: True
+  single: True
+  gpus:
+  - 0
+
+Monitor_Params:
+  timeout: -1
\ No newline at end of file