Release 0.74.3

See https://docs.lamin.ai/changelog

What's Changed

• ⚡️ Speed up parents by @sunnyosun in #1750
• ⬆️ Upgrade to pydantic v2 by @falexwolf in #1752
• ♻️ Reorganize hub client so that storage table in hub can get an instance FK by @falexwolf in #1753
• ✨ Add add_from_df method to BioRecord by @sunnyosun in #1754

Full Changelog: 0.74.2...0.74.3

Release 0.74.2

What's Changed

• 🏷️ Add types to core fields by @falexwolf in #1716
• 👷 Use lamin-dev for transfer unit test by @sunnyosun in #1719
• 👷 Run latest-changes within PR on feature branch, not on main by @falexwolf in #1720
• 📝 Refactor docs by @falexwolf in #1721
• 📝 Polish bio-registries how-to by @falexwolf in #1722
• 🚸 Make sure input is string for search by @sunnyosun in #1726
• 🐛 Fix using in _registry by @sunnyosun in #1730
• 🚸 Cleaner API by @falexwolf in #1723
• ✨ Artifact.backed() for tiledbsoma stores by @Koncopd in #1728
• 🎨 Add generic Annotator by @sunnyosun in #1732
• 📝 Better CLI docs by @falexwolf in #1736
• ✨ Enable Ruff security rules (bandit) by @Zethson in #1686
• ⬆️ Upgrade submodules by @fredericenard in #1733
• 🐛 Move mudata import in TYPE_CHECKING by @fredericenard in #1735
• 🧪 More tests for Annotator by @sunnyosun in #1737
• 🚚 Rename Registry to Record by @falexwolf in #1740
• ✅ Add invalid transform type and finish before track tests by @Zethson in #1738
• ⬆️ Upgrade lamindb-setup by @fredericenard in #1742
• 🐛 Fix return values of .save() for a few classes by @falexwolf in #1741
• ♻️ Remove generic Annotator, refactor annotate guides by @sunnyosun in #1744
• ♻️ Rename Artifact.backed to Artifact.open by @Koncopd in #1747
• 📝 Refactor docs, including annotate guide by @falexwolf in #1748
• 🚚 Deprecate Annotate in favor of Curate by @falexwolf in #1749

Full Changelog: 0.74.1...0.74.2

Release 0.74.1

What's Changed

• ✅ Add add_values test for dicts by @Zethson in #1706
• ⬆️ Upgrade anndata to 0.10.8 by @Koncopd in #1707
• 📝 Add pip install for guides by @sunnyosun in #1712
• ♻️ Refactor ln.settings by @falexwolf in #1711
• 📝 Update hub screenshots by @sunnyosun in #1714
• ✨ Added support for different join types in QuerySet.df() by @insavchuk in #1709

New Contributors

• @insavchuk made their first contribution in #1709

Full Changelog: 0.74.0...0.74.1

Release 0.74.0

What's Changed

• ♻️ Refactor after upath upgrade by @Koncopd in #1699
• 🐛 Fix check_path_is_child_of_root for upaths with different storage_options by @Koncopd in #1700
• ✨ Ignore datasets in code coverage by @Zethson in #1701
• 🏗️ Add type field to Artifact, allow linking model-like artifacts against params, validate params like features, enable features-based annotation with non-ulabels by @falexwolf in #1690
• ✨ Support dict in add_values by @Zethson in #1705

Full Changelog: 0.73.2...0.74.0

Release 0.73.2

What's Changed

• 🐛 Import IPython inside view by @Koncopd in #1696
• 🐛 Fix clashing reverse accessors between .previous_runs and .run by @falexwolf in #1698

Full Changelog: 0.73.1...0.73.2

Release 0.73.1

What's Changed

• 🐛 Fix generation of uid for default Transform constructor by @falexwolf in #1684
• ⬆️ Migrate to upath 0.2.2 by @Koncopd in #1687
• ✨ Only standardize if synonyms column is present by @Zethson in #1688
• 🏗️ Instantly synchronize instance schema with the hub by @falexwolf in #1689
• ✨ Add .ome.zarr as composite suffix by @sunnyosun in #1691
• ⬆️ Relase sub modules by @sunnyosun in #1692

Full Changelog: 0.73.0...0.73.1

Release 0.73.0

What's Changed

• 🐛 Actually add tracking run for entities beyond Artifact & Collection by @falexwolf in #1673
• 🔊 Fix annotate logging by @sunnyosun in #1675
• ✨ Improve coverage of annotate by @Zethson in #1665
• 🚸 More intuitive version updating dialogue by @falexwolf in #1676
• 🚸 Make upload_from(), download_to(), and view_tree() more user friendly by @falexwolf in #1677
• 🐛 Fix trailing slash in upload_from source by @Koncopd in #1678
• 🚸 ln.track() returns run, better duplicate detection and search, prettier .describe(), and more by @falexwolf in #1674
• 🔊 Better catching exceptions for graphviz install by @sunnyosun in #1679
• ✨ Enable to query by features via Artifact.features.filter(key=value) by @falexwolf in #1680
• ♻️ Simple schema fixes by @falexwolf in #1681

Full Changelog: 0.72.1...0.73.0

Release 0.72.1

What's Changed

• 📝 Update intro by @sunnyosun in #1670
• ⬆️ Update bionty by @sunnyosun in #1671

Full Changelog: 0.72.0...0.72.1

Release 0.72.0

What's Changed

• 🐛 Remove debugging print statements by @Zethson in #1660
• 🚸 Better annotation flow: support non-categorical data, dictionary annotation & dictionary access (I) by @falexwolf in #1655
• 🏗️ Re-design link tables between Bionty & Artifact to account for Feature by @falexwolf in #1661
• ♻️ Rename .type to .dtype in Feature and FeatureSet & refactor feature types by @falexwolf in #1663
• 🏗️ Protect deletion in link tables, better names for link tables, maintain integrity upon label & feature renames by @falexwolf in #1666
• ♻️ Reformulate data lineage, remove json field from run by @falexwolf in #1667
• ✨ Extend managed access for AWS S3 to arbitrary paths by @falexwolf in #1668
• 📝 Fix docs by @falexwolf in #1669

Full Changelog: 0.71.3...0.72.0

Release 0.71.3

What's Changed

• Fix registry links in docs by @Zethson in #1638
• 🚸 No need to pass organism if validating on ids by @sunnyosun in #1639
• ⬆️ Upgrade nbproject by @Koncopd in #1641
• ✨ Introduce bulk update by @falexwolf in #1640
• ♻️ Refactor search by @falexwolf in #1646
• ⚡️ Speed-up file hash by @Koncopd in #1651
• ⚡️ Parallel hashing of directories by @Koncopd in #1652
• ⚡️ Improve the speed of describe by @sunnyosun in #1645
• 🐛 Fix copy_or_move_to_cache for local storage_path by @Koncopd in #1653
• ✨ Get artifacts through the CLI by @falexwolf in #1642
• 🎨 Enable transfer when schema don't match by @sunnyosun in #1654
• ⬆️ Release lamindb-setup by @sunnyosun in #1656
• 🐛 Fix from_values by @sunnyosun in #1657
• ⬆️ Release core by @sunnyosun in #1658

Full Changelog: 0.71.2...0.71.3