From cb35302f452657f034b73823560a5ae5f89b99bc Mon Sep 17 00:00:00 2001
From: knausb <briank.lists@gmail.com>
Date: Fri, 1 Dec 2023 13:48:21 -0800
Subject: [PATCH] addressed R CMD check --as-cran

---
 DESCRIPTION       | 2 +-
 R/create_chromR.R | 1 -
 R/extract_gt.R    | 1 -
 R/io_vcfR.R       | 2 +-
 man/io_vcfR.Rd    | 2 +-
 5 files changed, 3 insertions(+), 5 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 29e3debc..e4646d73 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -8,7 +8,7 @@ Description: Facilitates easy manipulation of variant call format (VCF) data.
     data may be written to a VCF file (*.vcf.gz). It also may be converted into
     other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between
     VCF data and familiar R software.
-Version: 1.14.0
+Version: 1.15.0
 Authors@R: c(
     person(c("Brian", "J."), "Knaus", role = c("cre", "aut"),
     email = "briank.lists@gmail.com", comment = c(ORCID = "0000-0003-1665-4343")),
diff --git a/R/create_chromR.R b/R/create_chromR.R
index a6fbc617..a02ba2e3 100644
--- a/R/create_chromR.R
+++ b/R/create_chromR.R
@@ -1,6 +1,5 @@
 #' @title Create chromR object
 #'
-#'
 #' @name create.chromR
 #' @rdname create_chromR
 #' @export
diff --git a/R/extract_gt.R b/R/extract_gt.R
index 31cc0e24..fe6041a6 100644
--- a/R/extract_gt.R
+++ b/R/extract_gt.R
@@ -1,6 +1,5 @@
 #' @title Extract elements from vcfR objects
 #'
-#'
 #' @rdname extract_gt
 #'
 #' @description
diff --git a/R/io_vcfR.R b/R/io_vcfR.R
index 0b0bf614..59057a88 100644
--- a/R/io_vcfR.R
+++ b/R/io_vcfR.R
@@ -77,7 +77,7 @@
 #' \href{https://cran.r-project.org/package=data.table}{data.table}::fread
 #'
 #' Bioconductor:
-#' \href{http://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf
+#' \href{https://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf
 #'
 #' Use: browseVignettes('vcfR') to find examples.
 #'
diff --git a/man/io_vcfR.Rd b/man/io_vcfR.Rd
index 0cbb2fab..b4b7d9e8 100644
--- a/man/io_vcfR.Rd
+++ b/man/io_vcfR.Rd
@@ -115,7 +115,7 @@ CRAN:
 \href{https://cran.r-project.org/package=data.table}{data.table}::fread
 
 Bioconductor:
-\href{http://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf
+\href{https://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf
 
 Use: browseVignettes('vcfR') to find examples.
 }