diff --git a/DESCRIPTION b/DESCRIPTION index 29e3deb..e4646d7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -8,7 +8,7 @@ Description: Facilitates easy manipulation of variant call format (VCF) data. data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software. -Version: 1.14.0 +Version: 1.15.0 Authors@R: c( person(c("Brian", "J."), "Knaus", role = c("cre", "aut"), email = "briank.lists@gmail.com", comment = c(ORCID = "0000-0003-1665-4343")), diff --git a/R/create_chromR.R b/R/create_chromR.R index a6fbc61..a02ba2e 100644 --- a/R/create_chromR.R +++ b/R/create_chromR.R @@ -1,6 +1,5 @@ #' @title Create chromR object #' -#' #' @name create.chromR #' @rdname create_chromR #' @export diff --git a/R/extract_gt.R b/R/extract_gt.R index 31cc0e2..fe6041a 100644 --- a/R/extract_gt.R +++ b/R/extract_gt.R @@ -1,6 +1,5 @@ #' @title Extract elements from vcfR objects #' -#' #' @rdname extract_gt #' #' @description diff --git a/R/io_vcfR.R b/R/io_vcfR.R index 0b0bf61..59057a8 100644 --- a/R/io_vcfR.R +++ b/R/io_vcfR.R @@ -77,7 +77,7 @@ #' \href{https://cran.r-project.org/package=data.table}{data.table}::fread #' #' Bioconductor: -#' \href{http://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf +#' \href{https://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf #' #' Use: browseVignettes('vcfR') to find examples. #' diff --git a/man/io_vcfR.Rd b/man/io_vcfR.Rd index 0cbb2fa..b4b7d9e 100644 --- a/man/io_vcfR.Rd +++ b/man/io_vcfR.Rd @@ -115,7 +115,7 @@ CRAN: \href{https://cran.r-project.org/package=data.table}{data.table}::fread Bioconductor: -\href{http://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf +\href{https://www.bioconductor.org/packages/release/bioc/html/VariantAnnotation.html}{VariantAnnotation}::readVcf Use: browseVignettes('vcfR') to find examples. }