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<h1>Galaxy training material</h1>
<p>A collection of training material from offered Galaxy courses</p>
<p style="text-align:center;"><a href="https://wiki.galaxyproject.org/Teach/GTN"><img src="shared/images/GTNLogo1000.png" width="200"></a></p><a href="https://wiki.galaxyproject.org/Teach/GTN">
<p class="view"><a href="https://github.com/bgruening/training-material">View the Project on GitHub <small>bgruening/training-material</small></a></p>
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<li><a href="https://github.com/bgruening/training-material/zipball/master">Download <strong>ZIP File</strong></a></li>
<li><a href="https://github.com/bgruening/training-material/tarball/master">Download <strong>TAR Ball</strong></a></li>
<li><a href="https://github.com/bgruening/training-material">View On <strong>GitHub</strong></a></li>
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<p style="text-align:center;"><script src="https://embed.github.com/view/geojson/bgruening/galaxy-maps/master/server.geojson?height=300&width=400"></script></p>
<h1>Training material</h1> <table> <thead> <tr> <th align="left">topic</th> <th align="center">features</th> </tr> </thead> <tbody> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/Genome-Annotation/general-introduction/README.md">Genome Annotation</a></td> <td align="center"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/RNA-Seq/">RNA-seq</a></td> <td align="center"> <g-emoji alias="whale" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f433.png">🐳</g-emoji> <a href="https://vimeo.com/128268401"><g-emoji alias="movie_camera" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f3a5.png">🎥</g-emoji></a> <a href="https://usegalaxy.org/u/jeremy/p/galaxy-rna-seq-analysis-exercise"><g-emoji alias="page_facing_up" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4c4.png">📄</g-emoji></a> <a href="https://github.com/bgruening/training-material/blob/master/RNA-Seq/"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></a> </td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/ChIP-Seq/ChIPseq.md">ChIP-seq</a></td> <td align="center"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/Exome-Seq/README.md">Exome-seq</a></td> <td align="center"> <a href="https://github.com/bgruening/training-material/tree/master/Exome-Seq/docker"><g-emoji alias="whale" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f433.png">🐳</g-emoji></a> <a href="https://github.com/bgruening/training-material/tree/master/Exome-Seq/tutorials"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></a> <a href="http://bgruening.github.io/training-material/Exome-Seq/slides/index.html#/"><g-emoji alias="mortar_board" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f393.png">🎓</g-emoji></a> <a href="https://github.com/bgruening/training-material/tree/master/Exome-Seq/docker"><g-emoji alias="eyes" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f440.png">👀</g-emoji></a> </td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/Methylation-Seq/Methylation-Seq.md">MethylC-seq</a></td> <td align="center"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/Galaxy_Introduction/Galaxy_Introduction.md">Galaxy Introduction</a></td> <td align="center"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></td> </tr> <tr> <td align="left"><a href="https://github.com/bgruening/training-material/blob/master/Dev-Corner/Data-Sources/Data_Sources.md">Data Sources</a></td> <td align="center"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></td> </tr> <tr> <td align="left"><a href="http://planemo.readthedocs.io/en/latest/writing_appliance.html">Galaxy Tool Dev</a></td> <td align="center"><a href="http://planemo.readthedocs.io/en/latest/writing_appliance.html"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></a></td> </tr> <tr> <td align="left"><a href="https://slides.com/bgruening/the-galaxy-docker-project/live#/">Galaxy Docker Project</a></td> <td align="center"><a href="https://slides.com/bgruening/the-galaxy-docker-project/live#/"><g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji></a></td> </tr> </tbody> </table> <p>The Galaxy community offers many different ways of training. The table above lists all available training features of a specific topic to give you a fast and comprehensive overview.</p> <ul> <li> <g-emoji alias="whale" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f433.png">🐳</g-emoji> The training course and material is available as Docker container.</li> <li> <g-emoji alias="movie_camera" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f3a5.png">🎥</g-emoji> The training course is available as video on our <a href="https://vimeo.com/galaxyproject">vimeo page</a>.</li> <li> <g-emoji alias="eyes" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f440.png">👀</g-emoji> The training course is available as <a href="https://github.com/galaxyproject/galaxy-tours">Galaxy tour</a> </li> <li> <g-emoji alias="page_facing_up" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4c4.png">📄</g-emoji> The training course and material is available as Galaxy page (<g-emoji alias="+1" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f44d.png">👍</g-emoji> hands-on training).</li> <li> <g-emoji alias="book" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f4d6.png">📖</g-emoji> The training course and material is available as annotated text (<g-emoji alias="+1" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f44d.png">👍</g-emoji> hands-on training).</li> <li> <g-emoji alias="mortar_board" fallback-src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f393.png">🎓</g-emoji> Slides as Introduction</li> </ul> <p><a href="https://wiki.galaxyproject.org/Teach/GTN"><img src="./shared/images/GTNLogo1000.png" width="35%" style="max-width:100%;"></a></p><a href="https://wiki.galaxyproject.org/Teach/GTN"> <h1>License</h1> </a><p><a href="https://wiki.galaxyproject.org/Teach/GTN">This work is licensed under the </a><a href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution 3.0 Unported License</a>.</p> <h1>Acknowledgment and Funding</h1> <p>We would like to thank all contributors to our Galaxy courses, especially those mentioned in the <a href="CONTRIBUTORS.md">Contributors list</a>, the Galaxy community for their constant support and our funding partners.</p> <p><a href="http://www.denbi.de/"><img src="https://raw.githubusercontent.com/bgruening/rbc_docs/master/logo/deNBI_Logo_rgb.png" width="15%" style="max-width:100%;"></a> <a href="http://www.sfb992.uni-freiburg.de/"><img src="https://raw.githubusercontent.com/bgruening/presentations/bce348bb606c312d531c479e63a66efc2bc38d44/shared/resources/img/MEDEP.jpg" width="15%" style="max-width:100%;"></a> <a href="http://www.ie-freiburg.mpg.de"><img src="https://raw.githubusercontent.com/bgruening/presentations/master/shared/resources/img/14_MPI_IE_logo_mit_180.gif" width="15%" style="max-width:100%;"></a> <a href="https://www.uni-freiburg.de/"><img src="https://raw.githubusercontent.com/bgruening/presentations/a2e38e4b007994af798320db3a0131c4bb891c0e/shared/resources/img/logo_freiburg.jpg" width="15%" style="max-width:100%;"></a></p>
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