make_plot_from_data.sh

Rscript plot_from_data.R \
  -r "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_1_28236452_28237761_clu_11658_-&chr1_28242638_C_G&ENSG00000130770.Rds" \
  -e /gpfs/space/projects/eQTLCatalogue/qtlmap/eQTL_Catalogue_r5_1/sumstats/Alasoo_2018_exon_macrophage_naive.all.tsv.gz \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/Rds

Rscript plot_from_data.R \
  -t "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_1_28236452_28237761_clu_11658_-&chr1_28242638_C_G&ENSG00000130770.tar.gz" \
  -e /gpfs/space/projects/eQTLCatalogue/qtlmap/eQTL_Catalogue_r5_1/sumstats/Alasoo_2018_exon_macrophage_naive.all.tsv.gz \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/tar


Rscript plot_from_data.R \
  -r "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_5_75354697_75355365_clu_17197_-&chr5_75355259_A_G&ENSG00000113161.Rds" \
  -e /gpfs/space/projects/eQTLCatalogue/qtlmap/eQTL_Catalogue_r5_1/sumstats/Alasoo_2018_exon_macrophage_naive.all.tsv.gz \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/Rds

Rscript plot_from_data.R \
  -t "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_5_75354697_75355365_clu_17197_-&chr5_75355259_A_G&ENSG00000113161.tar.gz" \
  -e /gpfs/space/projects/eQTLCatalogue/qtlmap/eQTL_Catalogue_r5_1/sumstats/Alasoo_2018_exon_macrophage_naive.all.tsv.gz \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/tar

Rscript plot_from_data.R \
  -r "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_5_75354697_75355365_clu_17197_-&chr5_75355259_A_G&ENSG00000113161.Rds" \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/Rds_no_betas

Rscript plot_from_data.R \
  -t "/gpfs/space/home/kerimov/coverage_plots/plot_data/plot_data_5_75354697_75355365_clu_17197_-&chr5_75355259_A_G&ENSG00000113161.tar.gz" \
  -o /gpfs/space/home/kerimov/coverage_plots/plots_from_data/tar_no_betas