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clinspacy (development version)

clinspacy 0.1.0.9002

  • Added a NEWS.md file to track changes to the package.
  • bind_* functions no longer run clinspacy_init() -- this should speed up load times

clinspacy 0.2.0.9000

  • Added NA to semantic_types argument for both clinspacy() and clinspacy_single() to prevent tokens from being discarded if they do not match a listed semantic type.
  • Moved clinspacy_single() logic into lapply() instead of gradually building a list using a for loop for boost in speed
  • Moved progress bar to clinspacy() so that it iterates over documents rather than tokens

clinspacy 0.2.0 (2021-02-22)

  • Changed lifecycle badge to stable

clinspacy 1.0.0 (2021-02-23)

  • Bumped version number to 1.0.0 since it's ready for CRAN submission

clinspacy 1.0.1 (2021-03-08)

  • Bug fix: removed unnecessary arguments and some clean up in prep for CRAN submission

clinspacy 1.0.2 (2021-03-18)

  • Fixed documentation prior to CRAN submission based on feedback
  • Bug fix: Specified version numbers for spaCy (2.3.0), scispaCy (0.2.5), and medspaCy (0.1.0.2) to ensure that the versions are compatible with one another
  • Bug fix: spaCy 2.3.0 must be installed from conda-forge (pip set to FALSE) because the source fails to build properly on Windows even with Visual C++ build tools installed
  • Update: Switched to using medspaCy instead of its individual components because medspaCy 0.1.0.2 is compatible with spaCy 2.3.0 (an older version was not).
  • Bug fix: changed section_title to section_category due to updates in medspaCy sectionizer API
  • Known issue: After first running clinspacy_init() on Windows, sometimes it cannot find numpy. This is a known issue with reticulate rstudio/reticulate#367. Restarting the R session and re-running clinspacy_init() appears to fix the issue