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getters.yml
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getters.yml
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target_default: none
packages:
- scipiper
targets:
none:
depends:
#### 1_network ####
# store the DRB network from Steve in the google drive folder and fetch it.
# ind file created with gd_confirm_posted('1_network/in/delaware_stream_temp_by_segment.zip.ind')
1_network/in/delaware_stream_temp_by_segment.zip:
command: gd_get('1_network/in/delaware_stream_temp_by_segment.zip.ind')
# we downloaded/uploaded reservoirs and dams to Drive.
# ind file created with gd_confirm_posted('1_network/in/dams-rev01-global-shp.zip.ind')
1_network/in/dams-rev01-global-shp.zip:
command: gd_get('1_network/in/dams-rev01-global-shp.zip.ind')
1_network/out/global_dams.rds:
command: gd_get('1_network/out/global_dams.rds.ind')
# ind file created with gd_confirm_posted('1_network/in/reservoirs-rev01-global-shp.zip.ind')
1_network/in/reservoirs-rev01-global-shp.zip:
command: gd_get('1_network/in/reservoirs-rev01-global-shp.zip.ind')
1_network/out/global_reservoirs.rds:
command: gd_get('1_network/out/global_reservoirs.rds.ind')
1_network/out/network.rds:
command: gd_get('1_network/out/network.rds.ind')
1_network/out/network.json:
command: gd_get('1_network/out/network.json.ind')
1_network/out/boundary.rds:
command: gd_get('1_network/out/boundary.rds.ind')
1_network/out/subseg_distance_matrix.rds:
command: gd_get('1_network/out/subseg_distance_matrix.rds.ind')
1_network/out/filtered_dams_reservoirs.rds:
command: gd_get('1_network/out/filtered_dams_reservoirs.rds.ind')
1_network/out/subseg_reservoir_mapping.rds:
command: gd_get('1_network/out/subseg_reservoir_mapping.rds.ind')
1_network/out/segments_relative_to_reservoirs.rds:
command: gd_get('1_network/out/segments_relative_to_reservoirs.rds.ind')
#### 2_observations ####
# temperature sites (placed on drive from/by ____)
2_observations/in/stream_sites_us.rds:
command: gd_get('2_observations/in/stream_sites_us.rds.ind')
# munged temperature data (placed on drive from/by ____)
2_observations/in/daily_temperatures_qaqc.rds:
command: gd_get('2_observations/in/daily_temperatures_qaqc.rds.ind')
# flow sites
2_observations/in/observation_summary.rds:
command: gd_get('2_observations/in/observation_summary.rds.ind')
2_observations/in/daily_flow.rds:
command: gd_get('2_observations/in/daily_flow.rds.ind')
2_observations/out/extra_flow_sites.rds:
command: gd_get('2_observations/out/extra_flow_sites.rds.ind')
# priority sites for forecasting
2_observations/out/obs_temp_priority_sites.csv:
command: gd_get('2_observations/out/obs_temp_priority_sites.csv.ind')
2_observations/out/obs_flow_priority_sites.csv:
command: gd_get('2_observations/out/obs_flow_priority_sites.csv.ind')
# reservoir release data, from Jeff, via Kendra request from NYC employee
2_observations/in/PCN_Spill_Release.xlsx:
command: gd_get('2_observations/in/PCN_Spill_Release.xlsx.ind')
2_observations/out/reservoir_releases.csv:
command: gd_get('2_observations/out/reservoir_releases.csv.ind')
# these data were manually extracted from ODRM reports
# to gap fill NYC DEP data, data from NY WSC, and modern data from NWIS
# reports found here under weekly data archived by month/year: https://webapps.usgs.gov/odrm/data/data.html
2_observations/in/manually_extracted_odrm_data.csv:
command: gd_get('2_observations/in/manually_extracted_odrm_data.csv.ind')
2_observations/out/modern_reservoir_releases.rds:
command: gd_get('2_observations/out/modern_reservoir_releases.rds.ind')
# list of NGWOS sites from Brian Pellerin, receieved 2020-04-18
2_observations/in/NGWOS_site_metadata.xlsx:
command: gd_get('2_observations/in/NGWOS_site_metadata.xlsx.ind')
2_observations/out/NGWOS_sites_data.rds:
command: gd_get('2_observations/out/NGWOS_sites_data.rds.ind')
2_observations/out/crosswalk_site_reach.rds:
command: gd_get('2_observations/out/crosswalk_site_reach.rds.ind')
2_observations/out/drb_filtered_sites.rds:
command: gd_get('2_observations/out/drb_filtered_sites.rds.ind')
2_observations/out/all_drb_temp_obs.rds:
command: gd_get('2_observations/out/all_drb_temp_obs.rds.ind')
2_observations/out/obs_temp_drb.rds:
command: gd_get('2_observations/out/obs_temp_drb.rds.ind')
2_observations/out/obs_flow_drb.rds:
command: gd_get('2_observations/out/obs_flow_drb.rds.ind')
# reservoir diversion data
2_observations/out/observed_daily_reservoir_water_budget_components.csv:
command: gd_get('2_observations/out/observed_daily_reservoir_water_budget_components.csv.ind')
2_observations/out/observed_monthly_reservoir_water_budget_components.csv:
command: gd_get('2_observations/out/observed_monthly_reservoir_water_budget_components.csv.ind')
2_observations/out/interpolated_daily_reservoir_water_budget_components.csv:
command: gd_get('2_observations/out/interpolated_daily_reservoir_water_budget_components.csv.ind')
# reservoir realsat surface area data
2_observations/out/raw_realsat_reservoir_data.csv:
command: gd_get('2_observations/out/raw_realsat_reservoir_data.csv.ind')
2_observations/out/realsat_monthly_surface_area.csv:
command: gd_get('2_observations/out/realsat_monthly_surface_area.csv.ind')
#### 3_predictions ####
# prms-sntemp model zip file
3_predictions/in/prms_sntemp/20191002_Delaware_streamtemp.zip:
command: gd_get('3_predictions/in/prms_sntemp/20191002_Delaware_streamtemp.zip.ind')
#
3_predictions/out/uncal_sntemp_input_output.feather:
command: gd_get('3_predictions/out/uncal_sntemp_input_output.feather.ind')
3_predictions/out/drb_subbasins.rds:
command: gd_get(ind_file = '3_predictions/out/drb_subbasins.rds.ind')
3_predictions/out/uncal_sntemp_input_output_subbasin_4182.feather:
command: gd_get(ind_file = '3_predictions/out/uncal_sntemp_input_output_subbasin_4182.feather.ind')
# segment-level drivers, intermediate model variables, and stream temperature predictions using uncalibrated PRMS-SNTemp
# from https://github.com/jzwart/delaware-water-temp/blob/626d6d159daccfcf52c5e7fddf88d24031f35e6d/4_model_for_PGDL.yml#L42-L46
3_predictions/in/uncal_sntemp_input_output.feather:
command: gd_get('3_predictions/in/uncal_sntemp_input_output.feather.ind')
3_predictions/out/uncal_sntemp_preds.csv:
command: gd_get('3_predictions/out/uncal_sntemp_preds.csv.ind')
# Xiaowei's original output using 100% of process model output in training period
# original file he sent was titled prd_RGCN_full_obstemp_cv2_full.npy
3_predictions/in/rgcn_v1_preds_raw.npy:
command: gd_get('3_predictions/in/rgcn_v1_preds_raw.npy.ind')
3_predictions/out/rgcn_v1_preds.feather:
command: gd_get('3_predictions/out/rgcn_v1_preds.feather.ind')
# this is a test of Jeff's output, sent to Sam on 3/31
# RGCN is what XJ originally called the model =
# river graph convolutional network
3_predictions/in/rgcn_v2_preds.feather:
command: gd_get('3_predictions/in/rgcn_v2_preds.feather.ind')
# Jeff's full DRB model
3_predictions/in/rgcn_v2_preds_full.feather:
command: gd_get('3_predictions/in/rgcn_v2_preds_full.feather.ind')
3_predictions/out/compare_predictions_obs.feather:
command: gd_get('3_predictions/out/compare_predictions_obs.feather.ind')
# dwallin model
3_predictions/in/reservoir_downstream_preds.csv:
command: gd_get('3_predictions/in/reservoir_downstream_preds.csv.ind')
3_predictions/out/dwallin_stream_preds.csv:
command: gd_get('3_predictions/out/dwallin_stream_preds.csv.ind')
### 3_hybrid_predictions ###
# these files were uploaded to GD to the appropriate place,
# then used gd_confirm_posted to check and create indicator file
3_hybrid_predictions/in/RNN_0518.npy:
command: gd_get('3_hybrid_predictions/in/RNN_0518.npy.ind')
3_hybrid_predictions/in/RGCN_0518_woptr.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0518_woptr.npy.ind')
3_hybrid_predictions/in/RGCN_0518_wctr.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0518_wctr.npy.ind')
3_hybrid_predictions/in/RGCN_0518.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0518.npy.ind')
3_hybrid_predictions/in/ANN_0831.npy:
command: gd_get('3_hybrid_predictions/in/ANN_0831.npy.ind')
3_hybrid_predictions/in/PGRNN_0716.npy:
command: gd_get('3_hybrid_predictions/in/PGRNN_0716.npy.ind')
# model runs with 2% and 0.1% of training data
3_hybrid_predictions/in/RNN_0507_d001.npy:
command: gd_get('3_hybrid_predictions/in/RNN_0507_d001.npy.ind')
3_hybrid_predictions/in/RNN_0507_d02.npy:
command: gd_get('3_hybrid_predictions/in/RNN_0507_d02.npy.ind')
3_hybrid_predictions/in/RGCN_woptr_0507_d001.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_woptr_0507_d001.npy.ind')
3_hybrid_predictions/in/RGCN_woptr_0507_d02.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_woptr_0507_d02.npy.ind')
3_hybrid_predictions/in/RGCN_0507_wctr_d001.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0507_wctr_d001.npy.ind')
3_hybrid_predictions/in/RGCN_0507_wctr_d02.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0507_wctr_d02.npy.ind')
3_hybrid_predictions/in/RGCN_0507_d001.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0507_d001.npy.ind')
3_hybrid_predictions/in/RGCN_0507_d02.npy:
command: gd_get('3_hybrid_predictions/in/RGCN_0507_d02.npy.ind')
3_hybrid_predictions/in/ANN_0507_d001.npy:
command: gd_get('3_hybrid_predictions/in/ANN_0507_d001.npy.ind')
3_hybrid_predictions/in/ANN_0507_d02.npy:
command: gd_get('3_hybrid_predictions/in/ANN_0507_d02.npy.ind')
3_hybrid_predictions/in/PGRNN_0507_d001.npy:
command: gd_get('3_hybrid_predictions/in/PGRNN_0507_d001.npy.ind')
3_hybrid_predictions/in/PGRNN_0507_d02.npy:
command: gd_get('3_hybrid_predictions/in/PGRNN_0507_d02.npy.ind')
3_hybrid_predictions/out/compare_predictions_obs_d100.rds:
command: gd_get('3_hybrid_predictions/out/compare_predictions_obs_d100.rds.ind')
3_hybrid_predictions/out/compare_predictions_obs_d001.rds:
command: gd_get('3_hybrid_predictions/out/compare_predictions_obs_d001.rds.ind')
3_hybrid_predictions/out/compare_predictions_obs_d02.rds:
command: gd_get('3_hybrid_predictions/out/compare_predictions_obs_d02.rds.ind')
3_hybrid_predictions/out/compare_predictions_obs.rds:
command: gd_get('3_hybrid_predictions/out/compare_predictions_obs.rds.ind')
#### 9_collaborator_data ####
## Makerspace ##
9_collaborator_data/mkrsp/delaware_sites_summary.rds:
command: gd_get('9_collaborator_data/mkrsp/delaware_sites_summary.rds.ind')
9_collaborator_data/mkrsp/delaware_sites_summary.geojson:
command: gd_get('9_collaborator_data/mkrsp/delaware_sites_summary.geojson.ind')
## University of Minnesota ##
9_collaborator_data/umn/distance_matrix.rds:
command: gd_get('9_collaborator_data/umn/distance_matrix.rds.ind')
9_collaborator_data/umn/distance_matrix.npz:
command: gd_get('9_collaborator_data/umn/distance_matrix.npz.ind')
9_collaborator_data/umn/network_subset.rds:
command: gd_get('9_collaborator_data/umn/network_subset.rds.ind')
9_collaborator_data/umn/distance_matrix_subset.rds:
command: gd_get('9_collaborator_data/umn/distance_matrix_subset.rds.ind')
9_collaborator_data/umn/distance_matrix_subset.npz:
command: gd_get('9_collaborator_data/umn/distance_matrix_subset.npz.ind')
9_collaborator_data/umn/obs_temp_full.csv:
command: gd_get('9_collaborator_data/umn/obs_temp_full.csv.ind')
9_collaborator_data/umn/obs_temp_subset.csv:
command: gd_get('9_collaborator_data/umn/obs_temp_subset.csv.ind')
9_collaborator_data/umn/obs_flow_full.csv:
command: gd_get('9_collaborator_data/umn/obs_flow_full.csv.ind')
9_collaborator_data/umn/obs_flow_subset.csv:
command: gd_get('9_collaborator_data/umn/obs_flow_subset.csv.ind')
9_collaborator_data/umn/reservoir_features.csv:
command: gd_get('9_collaborator_data/umn/reservoir_features.csv.ind')
9_collaborator_data/umn/network_subset_lordville.rds:
command: gd_get('9_collaborator_data/umn/network_subset_lordville.rds.ind')
9_collaborator_data/umn/distance_matrix_lordville.rds:
command: gd_get('9_collaborator_data/umn/distance_matrix_lordville.rds.ind')
9_collaborator_data/umn/obs_temp_subset_lordville.csv:
command: gd_get('9_collaborator_data/umn/obs_temp_subset_lordville.csv.ind')
9_collaborator_data/umn/obs_flow_subset_lordville.csv:
command: gd_get('9_collaborator_data/umn/obs_flow_subset_lordville.csv.ind')
## Penn State ##
9_collaborator_data/psu/highly_observed_sites.csv:
command: gd_get('9_collaborator_data/psu/highly_observed_sites.csv.ind')
9_collaborator_data/psu/highly_obs_distance_matrix.rds:
command: gd_get('9_collaborator_data/psu/highly_obs_distance_matrix.rds.ind')
9_collaborator_data/psu/highly_obs_distance_matrix.csv:
command: gd_get('9_collaborator_data/psu/highly_obs_distance_matrix.csv.ind')
9_collaborator_data/psu/sntemp_preds_aggregated.feather:
command: gd_get('9_collaborator_data/psu/sntemp_preds_aggregated.feather.ind')
9_collaborator_data/psu/temp_obs_high_obs_sites.csv:
command: gd_get('9_collaborator_data/psu/temp_obs_high_obs_sites.csv.ind')
9_collaborator_data/psu/flow_obs_high_obs_sites.csv:
command: gd_get('9_collaborator_data/psu/flow_obs_high_obs_sites.csv.ind')
## Reservoirs ##
9_collaborator_data/res/res_io_obs.feather:
command: gd_get('9_collaborator_data/res/res_io_obs.feather.ind')
9_collaborator_data/res/res_io_sntemp.feather:
command: gd_get('9_collaborator_data/res/res_io_sntemp.feather.ind')