From 6167331bac707087a3aad8aba1993a91a2c42080 Mon Sep 17 00:00:00 2001 From: jacopo-ronchi Date: Thu, 30 Nov 2023 16:38:16 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20jacopo-r?= =?UTF-8?q?onchi/MIRit@01cd6e1f9dd809d57dea9d9a87bbfcf22f3d97a0=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- CODE_OF_CONDUCT.html | 2 +- CONTRIBUTING.html | 2 +- LICENSE.html | 2 +- SUPPORT.html | 2 +- articles/MIRit.html | 271 ++++++++---------- .../MIRit_files/figure-html/corPlot-1.png | Bin 88411 -> 88342 bytes .../MIRit_files/figure-html/gsePlot-1.png | Bin 74069 -> 73738 bytes .../MIRit_files/figure-html/intTargEnr-1.png | Bin 75841 -> 75068 bytes .../figure-html/integrationDot-1.png | Bin 80046 -> 79033 bytes articles/MIRit_files/figure-html/mds-1.png | Bin 60195 -> 60138 bytes articles/MIRit_files/figure-html/oraDot-1.png | Bin 104991 -> 104010 bytes .../MIRit_files/figure-html/thyroidBars-1.png | Bin 29929 -> 29757 bytes .../figure-html/thyroidNetwork-1.png | Bin 142809 -> 142637 bytes .../MIRit_files/figure-html/volcano-1.png | Bin 239062 -> 238859 bytes articles/index.html | 2 +- authors.html | 2 +- index.html | 22 +- news/index.html | 2 +- pkgdown.yml | 6 +- reference/FunctionalEnrichment-class.html | 2 +- .../IntegrativePathwayAnalysis-class.html | 2 +- reference/MIRit-package.html | 2 +- reference/MirnaExperiment-class.html | 2 +- reference/MirnaExperiment.html | 2 +- reference/Rplot001.png | Bin 38612 -> 38733 bytes reference/Rplot002.png | Bin 38612 -> 38733 bytes reference/Rplot003.png | Bin 21695 -> 21733 bytes reference/addDifferentialExpression.html | 2 +- reference/augmentedPathways.html | 2 +- reference/batchCorrection.html | 2 +- reference/deAccessors.html | 9 +- reference/deAnalysis.html | 2 +- reference/enrichGenes-1.png | Bin 55640 -> 49966 bytes reference/enrichGenes.html | 3 +- reference/enrichTargets-1.png | Bin 87496 -> 90627 bytes reference/enrichTargets.html | 2 +- reference/enrichedFeatures.html | 2 +- reference/enrichmentBarplot-1.png | Bin 36494 -> 38044 bytes reference/enrichmentBarplot.html | 2 +- reference/enrichmentDatabase.html | 2 +- reference/enrichmentDotplot-1.png | Bin 48505 -> 50405 bytes reference/enrichmentDotplot.html | 2 +- reference/enrichmentMethod.html | 2 +- reference/enrichmentMetric.html | 2 +- reference/enrichmentResults.html | 2 +- reference/findMirnaSNPs.html | 6 +- reference/geneCounts.html | 2 +- reference/geneSet.html | 2 +- reference/getEvidence.html | 2 +- reference/getTargets.html | 6 +- reference/gseaPlot-1.png | Bin 63747 -> 63817 bytes reference/gseaPlot.html | 9 +- reference/gseaRidgeplot-1.png | Bin 53843 -> 57621 bytes reference/gseaRidgeplot.html | 2 +- reference/index.html | 19 +- reference/integratedPathways.html | 2 +- reference/integration.html | 2 +- reference/integrationDatabase.html | 2 +- reference/integrationDotplot-1.png | Bin 81407 -> 85183 bytes reference/integrationDotplot.html | 2 +- reference/listPathways.html | 102 +++---- reference/loadExamples.html | 2 +- reference/mirVariantPlot.html | 2 +- reference/mirnaCounts.html | 2 +- reference/mirnaIntegration.html | 2 +- reference/mirnaTargets.html | 2 +- reference/pairedSamples.html | 2 +- reference/plotCorrelation-1.png | Bin 61474 -> 62007 bytes reference/plotCorrelation.html | 2 +- reference/plotDE-1.png | Bin 28926 -> 28879 bytes reference/plotDE-2.png | Bin 28230 -> 28817 bytes reference/plotDE-3.png | Bin 58653 -> 58624 bytes reference/plotDE.html | 9 +- reference/plotDimensions-1.png | Bin 62940 -> 64823 bytes reference/plotDimensions-2.png | Bin 32174 -> 31964 bytes reference/plotDimensions.html | 9 +- reference/plotVolcano-1.png | Bin 121533 -> 124832 bytes reference/plotVolcano-2.png | Bin 189323 -> 189746 bytes reference/plotVolcano.html | 2 +- reference/preparePathways-1.png | Bin 51284 -> 51105 bytes reference/preparePathways-2.png | Bin 109030 -> 111038 bytes reference/preparePathways.html | 8 +- reference/searchDisease.html | 2 +- reference/significantAccessors.html | 2 +- reference/supportedOrganisms.html | 2 +- reference/topologicalAnalysis-1.png | Bin 36065 -> 52757 bytes reference/topologicalAnalysis-2.png | Bin 109030 -> 111038 bytes reference/topologicalAnalysis.html | 10 +- reference/visualizeNetwork-1.png | Bin 109030 -> 111038 bytes reference/visualizeNetwork.html | 2 +- search.json | 2 +- 92 files changed, 264 insertions(+), 317 deletions(-) diff --git a/404.html b/404.html index 0f5a872..b89ce70 100644 --- a/404.html +++ b/404.html @@ -86,7 +86,7 @@ diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 2be3bd0..7fc62de 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -70,7 +70,7 @@ diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index 57610f8..29c1620 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -87,7 +87,7 @@

Code of Conduct diff --git a/LICENSE.html b/LICENSE.html index ce1be72..76fbcfe 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -253,7 +253,7 @@

How to Apply These Terms diff --git a/SUPPORT.html b/SUPPORT.html index c387ae0..fc3bc89 100644 --- a/SUPPORT.html +++ b/SUPPORT.html @@ -85,7 +85,7 @@

What happens next? -

MIRit is provided without any warranty. Site built with pkgdown 2.0.7.

+

MIRit is provided without any warranty. Site built with pkgdown 2.0.7.9000.

diff --git a/articles/MIRit.html b/articles/MIRit.html index ef6544e..5d19d20 100644 --- a/articles/MIRit.html +++ b/articles/MIRit.html @@ -5,6 +5,7 @@ + Integrate miRNA and gene expression data with MIRit @@ -168,7 +169,7 @@ margin-left: 2em; } - +