orbi_plot_shot_noise() isotopocule filter

[brettdavidheiser]

If you have lot of isotopocules the shot noise plots get very busy, especially when facet_wrap. It might be nice to have a built in filter like as in the fuction call orbi_plot_raw_data(isotopocules = c("13C"), y= ratio). Of course it can be done with a filter call before hand.
flageddata_w_ratios |> orbi_analyze_shot_noise() |> dplyr::filter(isotopocule %in% c("13C", "18O")) |> orbi_plot_shot_noise()

[SabrielxD]

or it can be done with orbi_filter_isox(), no?

[brettdavidheiser]

Yes you can use the orbi_filter_isox(). It looks like you also have to filter out the data that has been labeled "unused" in the data_type before calling the shot noise function

[sebkopf]

I'm in favor of providing an isotopocules parameter since we have that in the other plotting functions it would be consistent (default would be to include all). Could also include a flag whether to show unused data but that's something we could consider for all plotting functions. Default should probably be show_unused = TRUE, yes?