1.10.0

Changes in Somatic mode:
-new method for variance/covariance calculation
-now Germline clustering affects Somatic clustering too

Changes in Germline:
-offtarget reads are supported
-output has gender of the sample

1.09

Changes in interface:
-number of threads added as a parameter with the flag --numberOfThreads
-clustering may be performed before germline analysis (flag --minimumNumOfElemsInCluster denotes the minimum number of elements in cluster)
-visualization added as option (true by default) with the flag visulizationIGV

Changes in CNVs detection:
-covariance between closely located probes included into germline mode
-bugfixes of somatic mode

1.081

-Variance calculation for Somatic is improved (covariance included)
-FDR for germline samples implemented
-Small changes like number of threads used and some bugfixes

1.08

Release with some fixes.

1.07

• Germline pipeline optimized.
• Somatic pipeline optimized for working with any number of clones.

1.06

Added Complex CNA signatures.

1.05

Added additional information and the possibility to specify a single output pair

1.04

ClinCNV is now capable to include off-target regions into the analysis.

1.01

Slight changes to output file format

Initial release

First release that works for somatic CNV calls