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IGV does not honour rbg value in bed12 file #1595

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duartemolha opened this issue Oct 8, 2024 · 1 comment

duartemolha commented Oct 8, 2024 •

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I have a bed12 file where i have indicated a rbg value on the 9th field

IGV displays the forward strand in the correct colour, but entries on the reverse strand get the default dark blue colour.

is there a way to prevent this behaviour?

#gffTags
chr17	7669621	7669741	name=entry1	0.23	-	7669621	7669741	0,0,0	1	120,	0,
chr17	7669660	7669780	name=entry2	0.17	+	7669660	7669780	0,0,0	1	120,	0,

according to this both entries should be colour in black (RGB 0,0,0) but only entry2 is

The text was updated successfully, but these errors were encountered:

duartemolha changed the title ~~IGV does not honour rbg value if bed12 file~~ IGV does not honour rbg value in bed12 file

Contributor

jrobinso commented Oct 8, 2024

What version of IGV are you using?

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