pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<properties>
		<bundle.symbolicName>org.cytoscape.rest.cy-rest</bundle.symbolicName>
		<bundle.namespace>org.cytoscape.rest</bundle.namespace>
		<maven-compiler-plugin.version>3.3</maven-compiler-plugin.version>
		<maven-bundle-plugin.version>2.5.4</maven-bundle-plugin.version>
		<osgi.api.version>4.2.0</osgi.api.version>
		<junit.version>4.12</junit.version>
		<jersey.version>2.21</jersey.version>

		<rest.api.version>v1</rest.api.version>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<cytoscape.api.version>3.2.1</cytoscape.api.version>
	</properties>

	<groupId>org.cytoscape</groupId>
	<artifactId>cy-rest</artifactId>
	<version>2.0.2</version>
	<packaging>bundle</packaging>
	<name>cyREST</name>

	<repositories>
		<repository>
			<id>cytoscape_releases</id>
			<snapshots>
				<enabled>false</enabled>
			</snapshots>
			<releases>
				<enabled>true</enabled>
			</releases>
			<name>Cytoscape Releases</name>
			<url>http://code.cytoscape.org/nexus/content/repositories/releases/</url>
		</repository>

		<!-- For API document generation -->
		<repository>
			<id>miredot</id>
			<name>MireDot Releases</name>
			<url>http://nexus.qmino.com/content/repositories/miredot</url>
		</repository>
	</repositories>

	<pluginRepositories>
		<pluginRepository>
			<id>miredot</id>
			<name>MireDot Releases</name>
			<url>http://nexus.qmino.com/content/repositories/miredot</url>
		</pluginRepository>
	</pluginRepositories>

	<!-- SCM Information. Currently hosted at GitHub. -->
	<scm>
		<connection>scm:https://github.com/idekerlab/cyREST.git</connection>
		<developerConnection>scm:git@github.com:idekerlab/cyREST.git</developerConnection>
	</scm>

	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>${maven-compiler-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<source>1.8</source>
					<target>1.8</target>
					<encoding>UTF-8</encoding>
					<optimize>true</optimize>
					<showWarnings>true</showWarnings>
					<showDeprecation>true</showDeprecation>
					<compilerArguments>
						<Xmaxwarns>10000</Xmaxwarns>
						<Xmaxerrs>10000</Xmaxerrs>
					</compilerArguments>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.felix</groupId>
				<artifactId>maven-bundle-plugin</artifactId>
				<version>${maven-bundle-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<instructions>
						<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
						<Bundle-Version>${project.version}</Bundle-Version>
						<Export-Package>!${bundle.namespace}.internal.*,${bundle.namespace}.*;version="${project.version}"</Export-Package>
						<Private-Package>org.cytoscape.io.internal.*,${bundle.namespace}.internal.*</Private-Package>
						<Bundle-Activator>${bundle.namespace}.internal.CyActivator</Bundle-Activator>
						<Embed-Dependency>*;scope=!provided|test;groupId=!org.cytoscape</Embed-Dependency>
						<Embed-Transitive>true</Embed-Transitive>
						<Import-Package>*;resolution:=optional</Import-Package>
					</instructions>
				</configuration>
			</plugin>

			<plugin>
				<groupId>com.qmino</groupId>
				<artifactId>miredot-plugin</artifactId>
				<version>1.6.2</version>
				<executions>
					<execution>
						<goals>
							<goal>restdoc</goal>
						</goals>
					</execution>
				</executions>
				<configuration>
					<licence>
						UHJvamVjdHxvcmcuY3l0b3NjYXBlLmN5LXJlc3R8MjAxOS0wOC0xMnx0cnVlI01Dd0NGQzZwaksydUc5QlJ5TFFMczlWQjJmOWRLNytKQWhRVWU5U3NqaHRXK3B6WW5kQjd5VUZBWGc1R0VnPT0=
					</licence>
					<!-- insert other configuration here (optional) -->
					<output>
						<title>RESTful API for Cytoscape ${rest.api.version}</title>
					</output>

					<restModel>
						<httpStatusCodes>
							<httpStatusCode>
								<httpCode>200</httpCode>
								<document>always</document>
								<defaultMessage>The service call has completed successfully.</defaultMessage>
							</httpStatusCode>
							<httpStatusCode>
								<httpCode>201</httpCode>
								<document>post</document>
								<defaultMessage>The service call has created a new object.</defaultMessage>
							</httpStatusCode>
							<httpStatusCode>
								<httpCode>412</httpCode>
								<document>put,post</document>
								<defaultMessage>Invalid JSON input.</defaultMessage>
							</httpStatusCode>
							<httpStatusCode>
								<httpCode>500</httpCode>
								<document>always</document>
								<defaultMessage>The API call has not succeeded.</defaultMessage>
							</httpStatusCode>
							<httpStatusCode>
								<httpCode>404</httpCode>
								<document>always</document>
								<defaultMessage>The URL (or object) does not exist.</defaultMessage>
							</httpStatusCode>
						</httpStatusCodes>
					</restModel>

				</configuration>
			</plugin>
			<plugin>
				<groupId>org.eluder.coveralls</groupId>
				<artifactId>coveralls-maven-plugin</artifactId>
				<version>3.1.0</version>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>cobertura-maven-plugin</artifactId>
				<version>2.6</version>
				<dependencies>
					<dependency>
						<groupId>org.ow2.asm</groupId>
						<artifactId>asm</artifactId>
						<version>5.0.3</version>
					</dependency>
				</dependencies>
				<configuration>
					<format>xml</format>
					<maxmem>256m</maxmem>
					<!-- aggregated reports for multi-module projects -->
					<aggregate>true</aggregate>
				</configuration>
			</plugin>
		</plugins>
	</build>

	<dependencyManagement>
		<dependencies>
			<dependency>
				<groupId>org.glassfish.jersey</groupId>
				<artifactId>jersey-bom</artifactId>
				<version>${jersey.version}</version>
				<type>pom</type>
				<scope>import</scope>
			</dependency>
		</dependencies>
	</dependencyManagement>

	<dependencies>
		<!-- Cytoscape 3 Dependencies -->
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>event-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>property-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>io-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>swing-application-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>layout-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>core-task-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>work-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>service-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>group-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>vizmap-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>command-executor-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>provided</scope>
		</dependency>

		<!-- OSGi core dependency -->
		<dependency>
			<groupId>org.osgi</groupId>
			<artifactId>org.osgi.core</artifactId>
			<version>${osgi.api.version}</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.osgi</groupId>
			<artifactId>org.osgi.compendium</artifactId>
			<version>${osgi.api.version}</version>
			<scope>provided</scope>
		</dependency>

		<!-- 3rd party libraries -->
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-databind</artifactId>
			<version>2.6.1</version>
		</dependency>

		<!-- Jersey -->
		<dependency>
			<groupId>org.glassfish.jersey.containers</groupId>
			<artifactId>jersey-container-grizzly2-http</artifactId>
		</dependency>
		<dependency>
			<groupId>org.glassfish.jersey.media</groupId>
			<artifactId>jersey-media-json-jackson</artifactId>
		</dependency>

		<dependency>
			<groupId>org.ops4j.pax.logging</groupId>
			<artifactId>pax-logging-api</artifactId>
			<version>1.5.3</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.ops4j.pax.logging</groupId>
			<artifactId>pax-logging-service</artifactId>
			<version>1.5.3</version>
			<scope>provided</scope>
		</dependency>

		<!-- Testing -->
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>${junit.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.mockito</groupId>
			<artifactId>mockito-all</artifactId>
			<version>1.10.19</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>model-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>test-jar</type>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>model-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>event-api</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>test-jar</type>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>viewmodel-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>viewmodel-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>test-jar</type>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>vizmap-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>ding-presentation-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<type>test-jar</type>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.cytoscape</groupId>
			<artifactId>ding-presentation-impl</artifactId>
			<version>${cytoscape.api.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.glassfish.jersey.test-framework.providers</groupId>
			<artifactId>jersey-test-framework-provider-grizzly2</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.glassfish.jersey.test-framework</groupId>
			<artifactId>jersey-test-framework-core</artifactId>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>com.qmino</groupId>
			<artifactId>miredot-annotations</artifactId>
			<version>1.3.1</version>
		</dependency>
	</dependencies>
</project>