From 253e01bca04104a8f86bfc1539997813c55ae340 Mon Sep 17 00:00:00 2001
From: brianreicher <reicher.b@northeastern.edu>
Date: Thu, 14 Dec 2023 11:41:22 -0500
Subject: [PATCH] Install requirements

---
 README.md  | 16 +++++++++++-----
 install.sh |  3 +++
 2 files changed, 14 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 2fb93e1..bc85e80 100644
--- a/README.md
+++ b/README.md
@@ -32,36 +32,42 @@ Automated segmentation for large-scale biological datasets.
 * Free software: Apache 2.0 License
 
 ### Installation
+A complete install can be run with: 
+```bash
+bash install.sh
+```
+
+Or install-by-install as follows:
 
-Install Rust and Cargo via RustUp:
+1. Install Rust and Cargo via RustUp:
 
 ```bash
 curl https://sh.rustup.rs -sSf | sh
 ```
 
 
-Install MongoDB:
+2. Install MongoDB:
 
 ```bash
 curl -fsSL https://pgp.mongodb.com/server-6.0.asc | sudo gpg -o /usr/share/keyrings/mongodb-server-6.0.gpg --dearmor
 ```
 
 
-And initialize a MongoDB server in a screen on your machine:
+3. And initialize a MongoDB server in a screen on your machine:
 
 ```bash
 screen
 mongod
 ```
 
-Install ``graph_tool``
+4. Install ``graph_tool``
 
 ```bash
 conda install -c conda-forge -c ostrokach-forge -c pkgw-forge graph-tool
 ```
 
 
-Install `autoseg`:
+5. Install `autoseg`:
 
 ```bash
 pip install git+https://github.com/brianreicher/autoseg.git
diff --git a/install.sh b/install.sh
index c125445..3c7f512 100644
--- a/install.sh
+++ b/install.sh
@@ -10,3 +10,6 @@ conda install -c conda-forge -c ostrokach-forge -c pkgw-forge graph-tool
 # initialize a MongoDB server
 screen 
 mongod
+
+# install autoseg
+pip install git+https://github.com/brianreicher/autoseg.git