H-3385: Allow updating the data type cache in the database

[TimDiekmann]

🌟 What is the purpose of this PR?

We change data type inheritence in quite a few PRs currently and to avoid running snapshot migrations for everything it's easier to run a command from the CLI. The functionality was borrowed from snapshots, which has to do the same functionality, but this PR also exposes the functionality to the CLI:

cargo run --bin hash-graph -- reindex-cache --data-types

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 20.15%. Comparing base (b9d8189) to head (bf4050c).
Report is 5 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #5285      +/-   ##
==========================================
- Coverage   20.18%   20.15%   -0.03%     
==========================================
  Files         510      510              
  Lines       17300    17323      +23     
  Branches     2546     2546              
==========================================
  Hits         3492     3492              
- Misses      13770    13793      +23     
  Partials       38       38              

Flag	Coverage Δ
apps.hash-ai-worker-ts	1.39% <ø> (ø)
apps.hash-api	1.18% <ø> (-0.01%)	⬇️
local.hash-backend-utils	8.81% <ø> (ø)
local.hash-isomorphic-utils	1.06% <ø> (ø)
local.hash-subgraph	24.32% <ø> (ø)

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[github-actions]

Benchmark results

@rust/graph-benches – Integrations

representative_read_multiple_entities

Function	Value	Mean	Flame graphs
entity_by_property	depths: DT=0, PT=2, ET=2, E=2	$$53.7 \mathrm{ms} \pm 260 \mathrm{μs}\left({\color{gray}0.494 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=2, E=2	$$49.6 \mathrm{ms} \pm 261 \mathrm{μs}\left({\color{gray}-0.239 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=2	$$43.7 \mathrm{ms} \pm 350 \mathrm{μs}\left({\color{gray}2.66 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=255, PT=255, ET=255, E=255	$$66.1 \mathrm{ms} \pm 426 \mathrm{μs}\left({\color{gray}-0.285 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=2, PT=2, ET=2, E=2	$$58.7 \mathrm{ms} \pm 287 \mathrm{μs}\left({\color{gray}1.44 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=0	$$39.9 \mathrm{ms} \pm 236 \mathrm{μs}\left({\color{gray}3.60 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=2, ET=2, E=2	$$93.4 \mathrm{ms} \pm 470 \mathrm{μs}\left({\color{gray}0.859 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=2, E=2	$$89.2 \mathrm{ms} \pm 614 \mathrm{μs}\left({\color{gray}0.831 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=2	$$79.3 \mathrm{ms} \pm 493 \mathrm{μs}\left({\color{gray}-0.055 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=255, PT=255, ET=255, E=255	$$106 \mathrm{ms} \pm 519 \mathrm{μs}\left({\color{gray}0.451 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=2, PT=2, ET=2, E=2	$$98.8 \mathrm{ms} \pm 588 \mathrm{μs}\left({\color{gray}0.791 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=0	$$41.1 \mathrm{ms} \pm 250 \mathrm{μs}\left({\color{gray}1.14 \mathrm{\%}}\right) $$	Flame Graph

representative_read_entity

Function	Value	Mean	Flame graphs
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/person/v/1	$$16.2 \mathrm{ms} \pm 167 \mathrm{μs}\left({\color{gray}4.29 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/building/v/1	$$15.3 \mathrm{ms} \pm 149 \mathrm{μs}\left({\color{lightgreen}-5.236 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/organization/v/1	$$15.4 \mathrm{ms} \pm 191 \mathrm{μs}\left({\color{lightgreen}-35.191 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/song/v/1	$$16.1 \mathrm{ms} \pm 190 \mathrm{μs}\left({\color{gray}3.47 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/page/v/2	$$15.6 \mathrm{ms} \pm 187 \mathrm{μs}\left({\color{lightgreen}-14.623 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/uk-address/v/1	$$16.4 \mathrm{ms} \pm 177 \mathrm{μs}\left({\color{gray}1.18 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/playlist/v/1	$$16.0 \mathrm{ms} \pm 190 \mathrm{μs}\left({\color{red}20.4 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/book/v/1	$$16.2 \mathrm{ms} \pm 178 \mathrm{μs}\left({\color{gray}3.87 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/block/v/1	$$16.0 \mathrm{ms} \pm 208 \mathrm{μs}\left({\color{gray}-0.966 \mathrm{\%}}\right) $$	Flame Graph

representative_read_entity_type

Function	Value	Mean	Flame graphs
get_entity_type_by_id	Account ID: d4e16033-c281-4cde-aa35-9085bf2e7579	$$1.42 \mathrm{ms} \pm 9.14 \mathrm{μs}\left({\color{gray}1.24 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_zero_depth

Function	Value	Mean	Flame graphs
entity_by_id	10 entities	$$2.08 \mathrm{ms} \pm 10.0 \mathrm{μs}\left({\color{gray}0.406 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$2.68 \mathrm{ms} \pm 73.2 \mathrm{μs}\left({\color{lightgreen}-7.349 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$1.91 \mathrm{ms} \pm 10.7 \mathrm{μs}\left({\color{gray}0.440 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	50 entities	$$4.11 \mathrm{ms} \pm 25.4 \mathrm{μs}\left({\color{gray}0.945 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$1.89 \mathrm{ms} \pm 12.1 \mathrm{μs}\left({\color{gray}-0.035 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_one_depth

Function	Value	Mean	Flame graphs
entity_by_id	10 entities	$$53.0 \mathrm{ms} \pm 182 \mathrm{μs}\left({\color{gray}2.73 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$71.8 \mathrm{ms} \pm 404 \mathrm{μs}\left({\color{gray}-3.171 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$25.1 \mathrm{ms} \pm 149 \mathrm{μs}\left({\color{gray}1.59 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	50 entities	$$270 \mathrm{ms} \pm 2.35 \mathrm{ms}\left({\color{lightgreen}-32.364 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$20.1 \mathrm{ms} \pm 103 \mathrm{μs}\left({\color{gray}0.520 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_linkless

Function	Value	Mean	Flame graphs
entity_by_id	10000 entities	$$9.52 \mathrm{ms} \pm 148 \mathrm{μs}\left({\color{lightgreen}-23.922 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$1.88 \mathrm{ms} \pm 8.08 \mathrm{μs}\left({\color{gray}0.761 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	100 entities	$$2.04 \mathrm{ms} \pm 9.09 \mathrm{μs}\left({\color{gray}0.982 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1000 entities	$$2.76 \mathrm{ms} \pm 17.8 \mathrm{μs}\left({\color{gray}0.508 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$1.87 \mathrm{ms} \pm 10.5 \mathrm{μs}\left({\color{gray}1.20 \mathrm{\%}}\right) $$	Flame Graph