From 4d31870c781a79fbf1027a4ab13ceb997748a398 Mon Sep 17 00:00:00 2001
From: Ronald Bergmann <info@black-snow.net>
Date: Tue, 1 Aug 2023 01:59:34 +0200
Subject: [PATCH] upgrade dependencies

---
 .Rprofile |   2 +-
 renv.lock | 331 ++++++++++++++++++++++++++++++++++++++++++++++--------
 2 files changed, 287 insertions(+), 46 deletions(-)

diff --git a/.Rprofile b/.Rprofile
index 05f85c7..604c348 100644
--- a/.Rprofile
+++ b/.Rprofile
@@ -1,5 +1,5 @@
 options(repos = c(
-    RSPM = "https://packagemanager.posit.co/cran/latest",
+#   RSPM = "https://packagemanager.posit.co/cran/latest",
     CRAN = "https://cran.r-project.org"
 ))
 options(pkgType = "both")
diff --git a/renv.lock b/renv.lock
index 76b8ee2..212b6d5 100644
--- a/renv.lock
+++ b/renv.lock
@@ -9,6 +9,13 @@
     ]
   },
   "Packages": {
+    "BH": {
+      "Package": "BH",
+      "Version": "1.81.0-1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "68122010f01c4dcfbe58ce7112f2433d"
+    },
     "CoordinateCleaner": {
       "Package": "CoordinateCleaner",
       "Version": "2.0-20",
@@ -63,14 +70,14 @@
     },
     "KernSmooth": {
       "Package": "KernSmooth",
-      "Version": "2.23-21",
+      "Version": "2.23-22",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "stats"
       ],
-      "Hash": "6314fc110e09548ba889491db6ae67fb"
+      "Hash": "2fecebc3047322fa5930f74fae5de70f"
     },
     "MASS": {
       "Package": "MASS",
@@ -89,11 +96,12 @@
     },
     "Matrix": {
       "Package": "Matrix",
-      "Version": "1.5-4.1",
+      "Version": "1.6-0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
+        "grDevices",
         "graphics",
         "grid",
         "lattice",
@@ -101,7 +109,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "38082d362d317745fb932e13956dccbb"
+      "Hash": "31262fd18481fab05c5e7258dac163ca"
     },
     "R6": {
       "Package": "R6",
@@ -132,14 +140,28 @@
     },
     "Rcpp": {
       "Package": "Rcpp",
-      "Version": "1.0.10",
+      "Version": "1.0.11",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "methods",
         "utils"
       ],
-      "Hash": "e749cae40fa9ef469b6050959517453c"
+      "Hash": "ae6cbbe1492f4de79c45fce06f967ce8"
+    },
+    "RcppEigen": {
+      "Package": "RcppEigen",
+      "Version": "0.3.3.9.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "Matrix",
+        "R",
+        "Rcpp",
+        "stats",
+        "utils"
+      ],
+      "Hash": "1e035db628cefb315c571202d70202fe"
     },
     "RcppParallel": {
       "Package": "RcppParallel",
@@ -151,6 +173,18 @@
       ],
       "Hash": "a45594a00f5dbb073d5ec9f48592a08a"
     },
+    "StanHeaders": {
+      "Package": "StanHeaders",
+      "Version": "2.26.27",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "RcppEigen",
+        "RcppParallel"
+      ],
+      "Hash": "f29d708a8e830a90d8f6d2acf1734974"
+    },
     "askpass": {
       "Package": "askpass",
       "Version": "1.1",
@@ -171,6 +205,16 @@
       ],
       "Hash": "50c838a310445e954bc13f26f26a6ecf"
     },
+    "backports": {
+      "Package": "backports",
+      "Version": "1.4.1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "c39fbec8a30d23e721980b8afb31984c"
+    },
     "base64enc": {
       "Package": "base64enc",
       "Version": "0.1-3",
@@ -210,6 +254,19 @@
       ],
       "Hash": "7a5ec01300dd42c9b94344f73753e20f"
     },
+    "beeswarm": {
+      "Package": "beeswarm",
+      "Version": "0.4.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "grDevices",
+        "graphics",
+        "stats",
+        "utils"
+      ],
+      "Hash": "0f4e9d8caa6feaa7e409ae6c30f2ca66"
+    },
     "bit": {
       "Package": "bit",
       "Version": "4.0.5",
@@ -297,6 +354,30 @@
       ],
       "Hash": "9b2191ede20fa29828139b9900922e51"
     },
+    "cellranger": {
+      "Package": "cellranger",
+      "Version": "1.1.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "rematch",
+        "tibble"
+      ],
+      "Hash": "f61dbaec772ccd2e17705c1e872e9e7c"
+    },
+    "checkmate": {
+      "Package": "checkmate",
+      "Version": "2.2.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "backports",
+        "utils"
+      ],
+      "Hash": "ca9c113196136f4a9ca9ce6079c2c99e"
+    },
     "class": {
       "Package": "class",
       "Version": "7.3-22",
@@ -389,10 +470,10 @@
     },
     "cpp11": {
       "Package": "cpp11",
-      "Version": "0.4.3",
+      "Version": "0.4.5",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "ed588261931ee3be2c700d22e94a29ab"
+      "Hash": "f07821e9b0aada6c999d4692e22a2ea7"
     },
     "crayon": {
       "Package": "crayon",
@@ -457,7 +538,7 @@
     },
     "dbplyr": {
       "Package": "dbplyr",
-      "Version": "2.3.2",
+      "Version": "2.3.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -481,7 +562,7 @@
         "vctrs",
         "withr"
       ],
-      "Hash": "d24305b92db333726aed162a2c23a147"
+      "Hash": "d6fd1b1440c1cacc6623aaa4e9fe352b"
     },
     "desc": {
       "Package": "desc",
@@ -514,14 +595,14 @@
     },
     "digest": {
       "Package": "digest",
-      "Version": "0.6.31",
+      "Version": "0.6.33",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "8b708f296afd9ae69f450f9640be8990"
+      "Hash": "b18a9cf3c003977b0cc49d5e76ebe48d"
     },
     "doParallel": {
       "Package": "doParallel",
@@ -562,7 +643,7 @@
     },
     "duckdb": {
       "Package": "duckdb",
-      "Version": "0.8.1",
+      "Version": "0.8.1-1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -571,7 +652,7 @@
         "methods",
         "utils"
       ],
-      "Hash": "cd45934dfab0021717cea3d424bdccf2"
+      "Hash": "a066bd8c5d84b5a6bf7dc5f24109d85c"
     },
     "e1071": {
       "Package": "e1071",
@@ -664,14 +745,14 @@
     },
     "fs": {
       "Package": "fs",
-      "Version": "1.6.2",
+      "Version": "1.6.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "94af08e0aa9675a16fadbb3aaaa90d2a"
+      "Hash": "47b5f30c720c23999b913a1a635cf0bb"
     },
     "generics": {
       "Package": "generics",
@@ -696,6 +777,21 @@
       ],
       "Hash": "45aa4def70a402e7d20efde490c13ecb"
     },
+    "ggbeeswarm": {
+      "Package": "ggbeeswarm",
+      "Version": "0.7.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "beeswarm",
+        "cli",
+        "ggplot2",
+        "lifecycle",
+        "vipor"
+      ],
+      "Hash": "899f28fe0388b7f687d7453429c2474d"
+    },
     "ggplot2": {
       "Package": "ggplot2",
       "Version": "3.4.2",
@@ -732,6 +828,20 @@
       ],
       "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e"
     },
+    "gridExtra": {
+      "Package": "gridExtra",
+      "Version": "2.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "grDevices",
+        "graphics",
+        "grid",
+        "gtable",
+        "utils"
+      ],
+      "Hash": "7d7f283939f563670a697165b2cf5560"
+    },
     "gtable": {
       "Package": "gtable",
       "Version": "0.3.3",
@@ -838,7 +948,7 @@
     },
     "igraph": {
       "Package": "igraph",
-      "Version": "1.5.0",
+      "Version": "1.5.0.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -855,7 +965,17 @@
         "stats",
         "utils"
       ],
-      "Hash": "84818361421d5fc3ff0bf4e669524217"
+      "Hash": "08352b502db2eae1e46364de6e6421f4"
+    },
+    "inline": {
+      "Package": "inline",
+      "Version": "0.3.19",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "methods"
+      ],
+      "Hash": "1deaf1de3eac7e1d3377954b3a283652"
     },
     "isoband": {
       "Package": "isoband",
@@ -891,13 +1011,13 @@
     },
     "jsonlite": {
       "Package": "jsonlite",
-      "Version": "1.8.5",
+      "Version": "1.8.7",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "methods"
       ],
-      "Hash": "3ee4d9899e4db3e976fc82b98d24a31a"
+      "Hash": "266a20443ca13c65688b2116d5220f76"
     },
     "knitr": {
       "Package": "knitr",
@@ -975,6 +1095,20 @@
       ],
       "Hash": "001cecbeac1cff9301bdc3775ee46a86"
     },
+    "loo": {
+      "Package": "loo",
+      "Version": "2.6.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "checkmate",
+        "matrixStats",
+        "parallel",
+        "stats"
+      ],
+      "Hash": "e5c8f41731502a0e98f353da23f7ca30"
+    },
     "magrittr": {
       "Package": "magrittr",
       "Version": "2.0.3",
@@ -985,6 +1119,16 @@
       ],
       "Hash": "7ce2733a9826b3aeb1775d56fd305472"
     },
+    "matrixStats": {
+      "Package": "matrixStats",
+      "Version": "1.0.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "9143629fd64335aac6a6250d1c1ed82a"
+    },
     "memoise": {
       "Package": "memoise",
       "Version": "2.0.1",
@@ -998,7 +1142,7 @@
     },
     "mgcv": {
       "Package": "mgcv",
-      "Version": "1.8-42",
+      "Version": "1.9-0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1011,7 +1155,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "3460beba7ccc8946249ba35327ba902a"
+      "Hash": "086028ca0460d0c368028d3bda58f31b"
     },
     "mime": {
       "Package": "mime",
@@ -1064,13 +1208,13 @@
     },
     "openssl": {
       "Package": "openssl",
-      "Version": "2.0.6",
+      "Version": "2.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "askpass"
       ],
-      "Hash": "0f7cd2962e3044bb940cca4f4b5cecbe"
+      "Hash": "273a6bb4a9844c296a459d2176673270"
     },
     "pillar": {
       "Package": "pillar",
@@ -1089,6 +1233,24 @@
       ],
       "Hash": "15da5a8412f317beeee6175fbc76f4bb"
     },
+    "pkgbuild": {
+      "Package": "pkgbuild",
+      "Version": "1.4.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "R6",
+        "callr",
+        "cli",
+        "crayon",
+        "desc",
+        "prettyunits",
+        "processx",
+        "rprojroot"
+      ],
+      "Hash": "beb25b32a957a22a5c301a9e441190b3"
+    },
     "pkgconfig": {
       "Package": "pkgconfig",
       "Version": "2.0.3",
@@ -1101,7 +1263,7 @@
     },
     "pkgload": {
       "Package": "pkgload",
-      "Version": "1.3.2",
+      "Version": "1.3.2.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1117,7 +1279,7 @@
         "utils",
         "withr"
       ],
-      "Hash": "6b0c222c5071efe0f3baf3dae9aa40e2"
+      "Hash": "a7f498a1b2a4a6816148e498509f6e1d"
     },
     "plyr": {
       "Package": "plyr",
@@ -1146,7 +1308,7 @@
     },
     "processx": {
       "Package": "processx",
-      "Version": "3.8.1",
+      "Version": "3.8.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1155,7 +1317,7 @@
         "ps",
         "utils"
       ],
-      "Hash": "d75b4059d781336efba24021915902b4"
+      "Hash": "3efbd8ac1be0296a46c55387aeace0f3"
     },
     "progress": {
       "Package": "progress",
@@ -1248,7 +1410,7 @@
     },
     "raster": {
       "Package": "raster",
-      "Version": "3.6-20",
+      "Version": "3.6-23",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1258,7 +1420,7 @@
         "sp",
         "terra"
       ],
-      "Hash": "ebebd9f0f203a129eb2da96470191b82"
+      "Hash": "337d6d70f7d6bf78df236a5a53f09db0"
     },
     "readr": {
       "Package": "readr",
@@ -1283,6 +1445,28 @@
       ],
       "Hash": "b5047343b3825f37ad9d3b5d89aa1078"
     },
+    "readxl": {
+      "Package": "readxl",
+      "Version": "1.4.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "cellranger",
+        "cpp11",
+        "progress",
+        "tibble",
+        "utils"
+      ],
+      "Hash": "8cf9c239b96df1bbb133b74aef77ad0a"
+    },
+    "rematch": {
+      "Package": "rematch",
+      "Version": "1.0.1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "c66b930d20bb6d858cd18e1cebcfae5c"
+    },
     "rematch2": {
       "Package": "rematch2",
       "Version": "2.1.2",
@@ -1296,10 +1480,12 @@
     "renv": {
       "Package": "renv",
       "Version": "1.0.0",
-      "OS_type": null,
-      "NeedsCompilation": "no",
+      "Source": "Repository",
       "Repository": "CRAN",
-      "Source": "Repository"
+      "Requirements": [
+        "utils"
+      ],
+      "Hash": "c321cd99d56443dbffd1c9e673c0c1a2"
     },
     "rgbif": {
       "Package": "rgbif",
@@ -1341,7 +1527,7 @@
     },
     "rgeos": {
       "Package": "rgeos",
-      "Version": "0.6-3",
+      "Version": "0.6-4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1352,7 +1538,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "223075bf775559b8a3e7252624e9bf1c"
+      "Hash": "2eab4e0f0b131f018bfb3e81857f9767"
     },
     "rgnparser": {
       "Package": "rgnparser",
@@ -1380,7 +1566,7 @@
     },
     "rmarkdown": {
       "Package": "rmarkdown",
-      "Version": "2.22",
+      "Version": "2.23",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1400,7 +1586,7 @@
         "xfun",
         "yaml"
       ],
-      "Hash": "75a01be060d800ceb14e32c666cacac9"
+      "Hash": "79f14e53725f28900d936f692bfdd69f"
     },
     "rnaturalearth": {
       "Package": "rnaturalearth",
@@ -1428,6 +1614,28 @@
       ],
       "Hash": "1de7ab598047a87bba48434ba35d497d"
     },
+    "rstan": {
+      "Package": "rstan",
+      "Version": "2.21.8",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "BH",
+        "R",
+        "Rcpp",
+        "RcppEigen",
+        "RcppParallel",
+        "StanHeaders",
+        "ggplot2",
+        "gridExtra",
+        "inline",
+        "loo",
+        "methods",
+        "pkgbuild",
+        "stats4"
+      ],
+      "Hash": "f8db1aa2a405b61dda9ebc5a732a59d3"
+    },
     "s2": {
       "Package": "s2",
       "Version": "1.1.4",
@@ -1442,7 +1650,7 @@
     },
     "sass": {
       "Package": "sass",
-      "Version": "0.4.6",
+      "Version": "0.4.7",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1452,7 +1660,7 @@
         "rappdirs",
         "rlang"
       ],
-      "Hash": "cc3ec7dd33982ef56570229b62d6388e"
+      "Hash": "6bd4d33b50ff927191ec9acbf52fd056"
     },
     "scales": {
       "Package": "scales",
@@ -1474,7 +1682,7 @@
     },
     "sf": {
       "Package": "sf",
-      "Version": "1.0-13",
+      "Version": "1.0-14",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1493,7 +1701,7 @@
         "units",
         "utils"
       ],
-      "Hash": "8fb4839843abc03528ff9f86424d6acd"
+      "Hash": "e2111252a76984ca50bf8d6314348681"
     },
     "sp": {
       "Package": "sp",
@@ -1512,6 +1720,17 @@
       ],
       "Hash": "2551981e6f85d59c81652bf654d6c3ca"
     },
+    "spData": {
+      "Package": "spData",
+      "Version": "2.3.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "sp"
+      ],
+      "Hash": "49704afce6839b2ac1c82c098feb7cc7"
+    },
     "stringdist": {
       "Package": "stringdist",
       "Version": "0.9.10",
@@ -1606,7 +1825,7 @@
     },
     "testthat": {
       "Package": "testthat",
-      "Version": "3.1.9",
+      "Version": "3.1.10",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1632,7 +1851,7 @@
         "waldo",
         "withr"
       ],
-      "Hash": "bcc48d6c50770b435c655954e45672c1"
+      "Hash": "6f403dc49295610a3a67ea1a9ca64346"
     },
     "tibble": {
       "Package": "tibble",
@@ -1771,6 +1990,18 @@
       ],
       "Hash": "d0ef2856b83dc33ea6e255caf6229ee2"
     },
+    "vipor": {
+      "Package": "vipor",
+      "Version": "0.4.5",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "graphics",
+        "stats"
+      ],
+      "Hash": "ea85683da7f2bfa63a98dc6416892591"
+    },
     "viridisLite": {
       "Package": "viridisLite",
       "Version": "0.4.2",
@@ -1824,6 +2055,16 @@
       ],
       "Hash": "2c993415154cdb94649d99ae138ff5e5"
     },
+    "wesanderson": {
+      "Package": "wesanderson",
+      "Version": "0.3.6",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "42f92f1e9ef722355959ec1f7c459636"
+    },
     "whisker": {
       "Package": "whisker",
       "Version": "0.4.1",
@@ -1867,14 +2108,14 @@
     },
     "xml2": {
       "Package": "xml2",
-      "Version": "1.3.4",
+      "Version": "1.3.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "7dc765ac9b909487326a7d471fdd3821"
+      "Hash": "6c40e5cfcc6aefd88110666e18c31f40"
     },
     "yaml": {
       "Package": "yaml",