diff --git a/.Rprofile b/.Rprofile index 05f85c7..604c348 100644 --- a/.Rprofile +++ b/.Rprofile @@ -1,5 +1,5 @@ options(repos = c( - RSPM = "https://packagemanager.posit.co/cran/latest", +# RSPM = "https://packagemanager.posit.co/cran/latest", CRAN = "https://cran.r-project.org" )) options(pkgType = "both") diff --git a/renv.lock b/renv.lock index 76b8ee2..212b6d5 100644 --- a/renv.lock +++ b/renv.lock @@ -9,6 +9,13 @@ ] }, "Packages": { + "BH": { + "Package": "BH", + "Version": "1.81.0-1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "68122010f01c4dcfbe58ce7112f2433d" + }, "CoordinateCleaner": { "Package": "CoordinateCleaner", "Version": "2.0-20", @@ -63,14 +70,14 @@ }, "KernSmooth": { "Package": "KernSmooth", - "Version": "2.23-21", + "Version": "2.23-22", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "stats" ], - "Hash": "6314fc110e09548ba889491db6ae67fb" + "Hash": "2fecebc3047322fa5930f74fae5de70f" }, "MASS": { "Package": "MASS", @@ -89,11 +96,12 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.5-4.1", + "Version": "1.6-0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", + "grDevices", "graphics", "grid", "lattice", @@ -101,7 +109,7 @@ "stats", "utils" ], - "Hash": "38082d362d317745fb932e13956dccbb" + "Hash": "31262fd18481fab05c5e7258dac163ca" }, "R6": { "Package": "R6", @@ -132,14 +140,28 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.10", + "Version": "1.0.11", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "methods", "utils" ], - "Hash": "e749cae40fa9ef469b6050959517453c" + "Hash": "ae6cbbe1492f4de79c45fce06f967ce8" + }, + "RcppEigen": { + "Package": "RcppEigen", + "Version": "0.3.3.9.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "Matrix", + "R", + "Rcpp", + "stats", + "utils" + ], + "Hash": "1e035db628cefb315c571202d70202fe" }, "RcppParallel": { "Package": "RcppParallel", @@ -151,6 +173,18 @@ ], "Hash": "a45594a00f5dbb073d5ec9f48592a08a" }, + "StanHeaders": { + "Package": "StanHeaders", + "Version": "2.26.27", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "RcppEigen", + "RcppParallel" + ], + "Hash": "f29d708a8e830a90d8f6d2acf1734974" + }, "askpass": { "Package": "askpass", "Version": "1.1", @@ -171,6 +205,16 @@ ], "Hash": "50c838a310445e954bc13f26f26a6ecf" }, + "backports": { + "Package": "backports", + "Version": "1.4.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "c39fbec8a30d23e721980b8afb31984c" + }, "base64enc": { "Package": "base64enc", "Version": "0.1-3", @@ -210,6 +254,19 @@ ], "Hash": "7a5ec01300dd42c9b94344f73753e20f" }, + "beeswarm": { + "Package": "beeswarm", + "Version": "0.4.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "graphics", + "stats", + "utils" + ], + "Hash": "0f4e9d8caa6feaa7e409ae6c30f2ca66" + }, "bit": { "Package": "bit", "Version": "4.0.5", @@ -297,6 +354,30 @@ ], "Hash": "9b2191ede20fa29828139b9900922e51" }, + "cellranger": { + "Package": "cellranger", + "Version": "1.1.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "rematch", + "tibble" + ], + "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" + }, + "checkmate": { + "Package": "checkmate", + "Version": "2.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "backports", + "utils" + ], + "Hash": "ca9c113196136f4a9ca9ce6079c2c99e" + }, "class": { "Package": "class", "Version": "7.3-22", @@ -389,10 +470,10 @@ }, "cpp11": { "Package": "cpp11", - "Version": "0.4.3", + "Version": "0.4.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "ed588261931ee3be2c700d22e94a29ab" + "Hash": "f07821e9b0aada6c999d4692e22a2ea7" }, "crayon": { "Package": "crayon", @@ -457,7 +538,7 @@ }, "dbplyr": { "Package": "dbplyr", - "Version": "2.3.2", + "Version": "2.3.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -481,7 +562,7 @@ "vctrs", "withr" ], - "Hash": "d24305b92db333726aed162a2c23a147" + "Hash": "d6fd1b1440c1cacc6623aaa4e9fe352b" }, "desc": { "Package": "desc", @@ -514,14 +595,14 @@ }, "digest": { "Package": "digest", - "Version": "0.6.31", + "Version": "0.6.33", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "8b708f296afd9ae69f450f9640be8990" + "Hash": "b18a9cf3c003977b0cc49d5e76ebe48d" }, "doParallel": { "Package": "doParallel", @@ -562,7 +643,7 @@ }, "duckdb": { "Package": "duckdb", - "Version": "0.8.1", + "Version": "0.8.1-1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -571,7 +652,7 @@ "methods", "utils" ], - "Hash": "cd45934dfab0021717cea3d424bdccf2" + "Hash": "a066bd8c5d84b5a6bf7dc5f24109d85c" }, "e1071": { "Package": "e1071", @@ -664,14 +745,14 @@ }, "fs": { "Package": "fs", - "Version": "1.6.2", + "Version": "1.6.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "94af08e0aa9675a16fadbb3aaaa90d2a" + "Hash": "47b5f30c720c23999b913a1a635cf0bb" }, "generics": { "Package": "generics", @@ -696,6 +777,21 @@ ], "Hash": "45aa4def70a402e7d20efde490c13ecb" }, + "ggbeeswarm": { + "Package": "ggbeeswarm", + "Version": "0.7.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "beeswarm", + "cli", + "ggplot2", + "lifecycle", + "vipor" + ], + "Hash": "899f28fe0388b7f687d7453429c2474d" + }, "ggplot2": { "Package": "ggplot2", "Version": "3.4.2", @@ -732,6 +828,20 @@ ], "Hash": "4f2596dfb05dac67b9dc558e5c6fba2e" }, + "gridExtra": { + "Package": "gridExtra", + "Version": "2.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "graphics", + "grid", + "gtable", + "utils" + ], + "Hash": "7d7f283939f563670a697165b2cf5560" + }, "gtable": { "Package": "gtable", "Version": "0.3.3", @@ -838,7 +948,7 @@ }, "igraph": { "Package": "igraph", - "Version": "1.5.0", + "Version": "1.5.0.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -855,7 +965,17 @@ "stats", "utils" ], - "Hash": "84818361421d5fc3ff0bf4e669524217" + "Hash": "08352b502db2eae1e46364de6e6421f4" + }, + "inline": { + "Package": "inline", + "Version": "0.3.19", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "methods" + ], + "Hash": "1deaf1de3eac7e1d3377954b3a283652" }, "isoband": { "Package": "isoband", @@ -891,13 +1011,13 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.8.5", + "Version": "1.8.7", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "methods" ], - "Hash": "3ee4d9899e4db3e976fc82b98d24a31a" + "Hash": "266a20443ca13c65688b2116d5220f76" }, "knitr": { "Package": "knitr", @@ -975,6 +1095,20 @@ ], "Hash": "001cecbeac1cff9301bdc3775ee46a86" }, + "loo": { + "Package": "loo", + "Version": "2.6.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "checkmate", + "matrixStats", + "parallel", + "stats" + ], + "Hash": "e5c8f41731502a0e98f353da23f7ca30" + }, "magrittr": { "Package": "magrittr", "Version": "2.0.3", @@ -985,6 +1119,16 @@ ], "Hash": "7ce2733a9826b3aeb1775d56fd305472" }, + "matrixStats": { + "Package": "matrixStats", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "9143629fd64335aac6a6250d1c1ed82a" + }, "memoise": { "Package": "memoise", "Version": "2.0.1", @@ -998,7 +1142,7 @@ }, "mgcv": { "Package": "mgcv", - "Version": "1.8-42", + "Version": "1.9-0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1011,7 +1155,7 @@ "stats", "utils" ], - "Hash": "3460beba7ccc8946249ba35327ba902a" + "Hash": "086028ca0460d0c368028d3bda58f31b" }, "mime": { "Package": "mime", @@ -1064,13 +1208,13 @@ }, "openssl": { "Package": "openssl", - "Version": "2.0.6", + "Version": "2.1.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "askpass" ], - "Hash": "0f7cd2962e3044bb940cca4f4b5cecbe" + "Hash": "273a6bb4a9844c296a459d2176673270" }, "pillar": { "Package": "pillar", @@ -1089,6 +1233,24 @@ ], "Hash": "15da5a8412f317beeee6175fbc76f4bb" }, + "pkgbuild": { + "Package": "pkgbuild", + "Version": "1.4.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "callr", + "cli", + "crayon", + "desc", + "prettyunits", + "processx", + "rprojroot" + ], + "Hash": "beb25b32a957a22a5c301a9e441190b3" + }, "pkgconfig": { "Package": "pkgconfig", "Version": "2.0.3", @@ -1101,7 +1263,7 @@ }, "pkgload": { "Package": "pkgload", - "Version": "1.3.2", + "Version": "1.3.2.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1117,7 +1279,7 @@ "utils", "withr" ], - "Hash": "6b0c222c5071efe0f3baf3dae9aa40e2" + "Hash": "a7f498a1b2a4a6816148e498509f6e1d" }, "plyr": { "Package": "plyr", @@ -1146,7 +1308,7 @@ }, "processx": { "Package": "processx", - "Version": "3.8.1", + "Version": "3.8.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1155,7 +1317,7 @@ "ps", "utils" ], - "Hash": "d75b4059d781336efba24021915902b4" + "Hash": "3efbd8ac1be0296a46c55387aeace0f3" }, "progress": { "Package": "progress", @@ -1248,7 +1410,7 @@ }, "raster": { "Package": "raster", - "Version": "3.6-20", + "Version": "3.6-23", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1258,7 +1420,7 @@ "sp", "terra" ], - "Hash": "ebebd9f0f203a129eb2da96470191b82" + "Hash": "337d6d70f7d6bf78df236a5a53f09db0" }, "readr": { "Package": "readr", @@ -1283,6 +1445,28 @@ ], "Hash": "b5047343b3825f37ad9d3b5d89aa1078" }, + "readxl": { + "Package": "readxl", + "Version": "1.4.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cellranger", + "cpp11", + "progress", + "tibble", + "utils" + ], + "Hash": "8cf9c239b96df1bbb133b74aef77ad0a" + }, + "rematch": { + "Package": "rematch", + "Version": "1.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "c66b930d20bb6d858cd18e1cebcfae5c" + }, "rematch2": { "Package": "rematch2", "Version": "2.1.2", @@ -1296,10 +1480,12 @@ "renv": { "Package": "renv", "Version": "1.0.0", - "OS_type": null, - "NeedsCompilation": "no", + "Source": "Repository", "Repository": "CRAN", - "Source": "Repository" + "Requirements": [ + "utils" + ], + "Hash": "c321cd99d56443dbffd1c9e673c0c1a2" }, "rgbif": { "Package": "rgbif", @@ -1341,7 +1527,7 @@ }, "rgeos": { "Package": "rgeos", - "Version": "0.6-3", + "Version": "0.6-4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1352,7 +1538,7 @@ "stats", "utils" ], - "Hash": "223075bf775559b8a3e7252624e9bf1c" + "Hash": "2eab4e0f0b131f018bfb3e81857f9767" }, "rgnparser": { "Package": "rgnparser", @@ -1380,7 +1566,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.22", + "Version": "2.23", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1400,7 +1586,7 @@ "xfun", "yaml" ], - "Hash": "75a01be060d800ceb14e32c666cacac9" + "Hash": "79f14e53725f28900d936f692bfdd69f" }, "rnaturalearth": { "Package": "rnaturalearth", @@ -1428,6 +1614,28 @@ ], "Hash": "1de7ab598047a87bba48434ba35d497d" }, + "rstan": { + "Package": "rstan", + "Version": "2.21.8", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "BH", + "R", + "Rcpp", + "RcppEigen", + "RcppParallel", + "StanHeaders", + "ggplot2", + "gridExtra", + "inline", + "loo", + "methods", + "pkgbuild", + "stats4" + ], + "Hash": "f8db1aa2a405b61dda9ebc5a732a59d3" + }, "s2": { "Package": "s2", "Version": "1.1.4", @@ -1442,7 +1650,7 @@ }, "sass": { "Package": "sass", - "Version": "0.4.6", + "Version": "0.4.7", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1452,7 +1660,7 @@ "rappdirs", "rlang" ], - "Hash": "cc3ec7dd33982ef56570229b62d6388e" + "Hash": "6bd4d33b50ff927191ec9acbf52fd056" }, "scales": { "Package": "scales", @@ -1474,7 +1682,7 @@ }, "sf": { "Package": "sf", - "Version": "1.0-13", + "Version": "1.0-14", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1493,7 +1701,7 @@ "units", "utils" ], - "Hash": "8fb4839843abc03528ff9f86424d6acd" + "Hash": "e2111252a76984ca50bf8d6314348681" }, "sp": { "Package": "sp", @@ -1512,6 +1720,17 @@ ], "Hash": "2551981e6f85d59c81652bf654d6c3ca" }, + "spData": { + "Package": "spData", + "Version": "2.3.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "sp" + ], + "Hash": "49704afce6839b2ac1c82c098feb7cc7" + }, "stringdist": { "Package": "stringdist", "Version": "0.9.10", @@ -1606,7 +1825,7 @@ }, "testthat": { "Package": "testthat", - "Version": "3.1.9", + "Version": "3.1.10", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1632,7 +1851,7 @@ "waldo", "withr" ], - "Hash": "bcc48d6c50770b435c655954e45672c1" + "Hash": "6f403dc49295610a3a67ea1a9ca64346" }, "tibble": { "Package": "tibble", @@ -1771,6 +1990,18 @@ ], "Hash": "d0ef2856b83dc33ea6e255caf6229ee2" }, + "vipor": { + "Package": "vipor", + "Version": "0.4.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "graphics", + "stats" + ], + "Hash": "ea85683da7f2bfa63a98dc6416892591" + }, "viridisLite": { "Package": "viridisLite", "Version": "0.4.2", @@ -1824,6 +2055,16 @@ ], "Hash": "2c993415154cdb94649d99ae138ff5e5" }, + "wesanderson": { + "Package": "wesanderson", + "Version": "0.3.6", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "42f92f1e9ef722355959ec1f7c459636" + }, "whisker": { "Package": "whisker", "Version": "0.4.1", @@ -1867,14 +2108,14 @@ }, "xml2": { "Package": "xml2", - "Version": "1.3.4", + "Version": "1.3.5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "7dc765ac9b909487326a7d471fdd3821" + "Hash": "6c40e5cfcc6aefd88110666e18c31f40" }, "yaml": { "Package": "yaml",