test-coverage.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: test-coverage

jobs:
  test-coverage:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v3
      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: false
      - name: Install OS packages
        run:   |
          sudo apt install -y libgdal-dev libudunits2-dev
      - name: Set RENV_PATHS_ROOT
        shell: bash
        run: |
          echo "RENV_PATHS_ROOT=${{ runner.temp }}/renv" >> $GITHUB_ENV
      - name: Install and activate renv
        run: |
          install.packages("renv")
          renv::activate()
        shell: Rscript {0}
      - name: Get R and OS version
        id: get-version
        run: |
          cat("##[set-output name=os-version;]", sessionInfo()$running, "\n", sep = "")
          cat("##[set-output name=r-version;]", R.Version()$version.string, sep = "")
        shell: Rscript {0}
      - name: Restore Renv package cache
        uses: actions/cache@v3
        with:
          path: ${{ env.RENV_PATHS_ROOT }}
          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{ inputs.cache-version }}-${{ hashFiles('renv.lock') }}
          restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-
      - name: Restore packages
        shell: Rscript {0}
        run: |
          if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")
          renv::restore()
      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::covr
          needs: coverage
      - name: Test coverage
        run: |
          covr::codecov(
            quiet = FALSE,
            clean = FALSE,
            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
          )
        shell: Rscript {0}
      - name: Show testthat output
        if: always()
        run: |
          ## --------------------------------------------------------------------
          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash
      - name: Upload test results
        if: failure()
        uses: actions/upload-artifact@v3
        with:
          name: coverage-test-failures
          path: ${{ runner.temp }}/package