From 780d52a3e93781eeb1aca91c02e6873ef9a20928 Mon Sep 17 00:00:00 2001
From: "Zachary S.L. Foster" <zacharyfoster1989@gmail.com>
Date: Fri, 13 Oct 2023 08:59:36 -0700
Subject: [PATCH] removed unneeded nesting in main workflow to make progress
 printing better (breaks cache)

---
 main.nf | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/main.nf b/main.nf
index b828c488..34f126cd 100644
--- a/main.nf
+++ b/main.nf
@@ -40,10 +40,10 @@ include { PATHOGENSURVEILLANCE } from './workflows/pathogensurveillance'
 //
 // WORKFLOW: Run main nf-core/PATHOGENDX analysis pipeline
 //
-workflow NFCORE_PATHOGENSURVEILLANCE {
-    PATHOGENSURVEILLANCE ()
-}
-
+//workflow NFCORE_PATHOGENSURVEILLANCE {
+//    PATHOGENSURVEILLANCE ()
+//}
+//
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     RUN ALL WORKFLOWS
@@ -55,7 +55,7 @@ workflow NFCORE_PATHOGENSURVEILLANCE {
 // See: https://github.com/nf-core/rnaseq/issues/619
 //
 workflow {
-    NFCORE_PATHOGENSURVEILLANCE ()
+    PATHOGENSURVEILLANCE ()
 }
 
 /*