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_site.yml
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_site.yml
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name: metacoder
navbar:
title: <div class="logo_frame"><span class="logo_helper"></span><img src="images/hex_sticker.png"
height=50px /></div> metacoder
href: index.html
left:
- text: Example
href: example.html
- text: Workshop
menu:
- text: Introduction
href: workshop--00--introduction.html
- text: Required software
href: workshop--00--required_software.html
- text: Required datasets
href: workshop--00--required_data.html
- text: Getting data into R
href: workshop--03--parsing.html
- text: Manipulating taxonomic data
href: workshop--04--manipulating.html
- text: Plotting taxonomic data
href: workshop--05--plotting.html
- text: Data quality control
href: workshop--06--quality_control.html
- text: Diversity and Ordination
href: workshop--07--diversity_stats.html
- text: Publication
menu:
- text: PLOS Comp Bio paper
href: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005404
- text: Human microbiome
href: publication--05--16s_human_microbiome.html
- text: TARA Oceans
href: publication--06--tara_oceans.html
- text: 'Digital PCR: SILVA'
href: publication--01--silva.html
- text: 'Digital PCR: RDP'
href: publication--02--rdp.html
- text: 'Digital PCR: Greengenes'
href: publication--03--greengenes.html
- text: 'Digital PCR: Comparing databases'
href: publication--04--16s_database_comparision.html
- text: Voting Geography
href: publication--08--voting.html
- text: Gene Expression
href: publication--09--gene_expression.html
- text: Appendices
menu:
- text: Introduction to R
href: appendix--00--intro_to_r.html
- text: Introduction to RStudio
href: appendix--00--intro_to_rstudio.html
- text: Glossary
href: appendix--00--glossary.html
- text: Slide show
href: appendix--00--presentation_page.html
- text: Poster
href: appendix--00--poster_page.html
- text: Metacoder source code
href: https://github.com/grunwaldlab/metacoder
- text: Website source code
href: https://github.com/grunwaldlab/metacoder_documentation
- text: FAQ
href: faq.html
- text: About
href: about.html
output:
html_document:
theme: sandstone
highlight: tango
include:
in_header: header.html
after_body: footer.html
css: style.css
lib_dir: site_libs
self_contained: no
output_dir: docs