Not clear what is what. Repo needs a readme and some guidance. Where are the data files? I do not see any csv files?

[grunwald]

No description provided.

[Neato-Nick]

Everything is in the R data files (.Rd). Since I did all the analysis in R, I figured if anyone wanted to reproduce the work they'd be doing it in R. They can just load the .Rd and all the variables will load in.

I can write a readme that explains this

[grunwald]

Yes, if things are not clear to me the reviewers will be even more lost. Thanks. Are the Rmd files annotated enough with comments so that a reader knows what is done where? Also think the figures can be removed.

[Neato-Nick]

8d97a1c

[Neato-Nick]

There's not much annotation, just a header (e.g. "### Figure 1") for each section where I made a figure.

The idea is to just be able to reproduce the figs. I spent a lot more time annotating and commenting my code for a previous pub, and not a single commenter or reviewer said anything.

[grunwald]

Your point is a good one, but chicken and egg. Would you have gotten comments if it were not annotated? I am not a fan of excessive annotation, but just short headers that tell what is what ...
I agree there is no need for a lot of comments. but it needs to be clear what was done. If a figure is clearly identified then readers can look at the text and know what was done.

[Neato-Nick]

Would you have gotten comments if it were not annotated?

Also a good point. I'll add a bit more to the Rmd but avoid adding a deluge.