From 6444f38f89fa8141927a4b681cca72ac2ad9dc4a Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Mon, 30 Mar 2020 13:51:05 -0400 Subject: [PATCH 01/22] explicitely disable optimization --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index a06ed64b..cc1edec6 100644 --- a/setup.py +++ b/setup.py @@ -22,7 +22,7 @@ elif platform.system() == 'Linux': if 'readthedocs.org/user_builds/ttcrpy' in os.path.dirname(__file__): # do not optimize when building on readthedocs server - extra_compile_args = ['-std=c++11'] + extra_compile_args = ['-std=c++11', '-O0'] else: extra_compile_args = ['-std=c++11', '-O3'] From 9cda0a7ad02ba4c8fc9803637ec995601ad1a7f0 Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Tue, 31 Mar 2020 08:22:32 -0400 Subject: [PATCH 02/22] xcode settings --- .../xcshareddata/IDEWorkspaceChecks.plist | 8 ++ .../xcshareddata/WorkspaceSettings.xcsettings | 5 + .../xcshareddata/ttcr.xccheckout | 41 +++++++ .../xcschemes/profile_threaded.xcscheme | 79 +++++++++++++ .../xcshareddata/xcschemes/someTests.xcscheme | 87 ++++++++++++++ .../xcschemes/ttcr3d_raypath.xcscheme | 109 ++++++++++++++++++ 6 files changed, 329 insertions(+) create mode 100644 ttcr.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist create mode 100644 ttcr.xcodeproj/project.xcworkspace/xcshareddata/WorkspaceSettings.xcsettings create mode 100644 ttcr.xcodeproj/project.xcworkspace/xcshareddata/ttcr.xccheckout create mode 100644 ttcr.xcodeproj/xcshareddata/xcschemes/profile_threaded.xcscheme create mode 100644 ttcr.xcodeproj/xcshareddata/xcschemes/someTests.xcscheme create mode 100644 ttcr.xcodeproj/xcshareddata/xcschemes/ttcr3d_raypath.xcscheme diff --git a/ttcr.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist new file mode 100644 index 00000000..18d98100 --- /dev/null +++ b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist @@ -0,0 +1,8 @@ + + + + + IDEDidComputeMac32BitWarning + + + diff --git a/ttcr.xcodeproj/project.xcworkspace/xcshareddata/WorkspaceSettings.xcsettings b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/WorkspaceSettings.xcsettings new file mode 100644 index 00000000..0c67376e --- /dev/null +++ b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/WorkspaceSettings.xcsettings @@ -0,0 +1,5 @@ + + + + + diff --git a/ttcr.xcodeproj/project.xcworkspace/xcshareddata/ttcr.xccheckout b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/ttcr.xccheckout new file mode 100644 index 00000000..9f4273ca --- /dev/null +++ b/ttcr.xcodeproj/project.xcworkspace/xcshareddata/ttcr.xccheckout @@ -0,0 +1,41 @@ + + + + + IDESourceControlProjectFavoriteDictionaryKey + + IDESourceControlProjectIdentifier + 67FE4950-A11B-4599-A60B-29BA65101476 + IDESourceControlProjectName + ttcr + IDESourceControlProjectOriginsDictionary + + 87A4E2EA51C472D5BBBE0FCCA9120C81E12DC52F + https://bitbucket.org/giroux/ttcr.git + + IDESourceControlProjectPath + ttcr.xcodeproj + IDESourceControlProjectRelativeInstallPathDictionary + + 87A4E2EA51C472D5BBBE0FCCA9120C81E12DC52F + ../.. + + IDESourceControlProjectURL + https://bitbucket.org/giroux/ttcr.git + IDESourceControlProjectVersion + 111 + IDESourceControlProjectWCCIdentifier + 87A4E2EA51C472D5BBBE0FCCA9120C81E12DC52F + IDESourceControlProjectWCConfigurations + + + IDESourceControlRepositoryExtensionIdentifierKey + public.vcs.git + IDESourceControlWCCIdentifierKey + 87A4E2EA51C472D5BBBE0FCCA9120C81E12DC52F + IDESourceControlWCCName + ttcr + + + + diff --git a/ttcr.xcodeproj/xcshareddata/xcschemes/profile_threaded.xcscheme b/ttcr.xcodeproj/xcshareddata/xcschemes/profile_threaded.xcscheme new file mode 100644 index 00000000..a979fc58 --- /dev/null +++ b/ttcr.xcodeproj/xcshareddata/xcschemes/profile_threaded.xcscheme @@ -0,0 +1,79 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/ttcr.xcodeproj/xcshareddata/xcschemes/someTests.xcscheme b/ttcr.xcodeproj/xcshareddata/xcschemes/someTests.xcscheme new file mode 100644 index 00000000..f200de19 --- /dev/null +++ b/ttcr.xcodeproj/xcshareddata/xcschemes/someTests.xcscheme @@ -0,0 +1,87 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/ttcr.xcodeproj/xcshareddata/xcschemes/ttcr3d_raypath.xcscheme b/ttcr.xcodeproj/xcshareddata/xcschemes/ttcr3d_raypath.xcscheme new file mode 100644 index 00000000..9743896b --- /dev/null +++ b/ttcr.xcodeproj/xcshareddata/xcschemes/ttcr3d_raypath.xcscheme @@ -0,0 +1,109 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From 6738bb991aec7213030446f441d0aea56e9d8387 Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Tue, 31 Mar 2020 08:22:54 -0400 Subject: [PATCH 03/22] add comment about memory layout --- ttcrpy/cmesh2d.pyx | 1 + 1 file changed, 1 insertion(+) diff --git a/ttcrpy/cmesh2d.pyx b/ttcrpy/cmesh2d.pyx index a8f8a963..cc46c9c9 100644 --- a/ttcrpy/cmesh2d.pyx +++ b/ttcrpy/cmesh2d.pyx @@ -142,6 +142,7 @@ cdef class Mesh2D: if not slowness.flags['C_CONTIGUOUS']: slowness = np.ascontiguousarray(slowness) + # ::1 tells cython that data is contiguous cdef double[::1] slowness_memview = slowness self.mesh.setSlowness(&slowness_memview[0], slowness_memview.shape[0]) From 011d2881cd5a4d806c955a63b9a2f5b3fc1b3137 Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Tue, 31 Mar 2020 08:26:19 -0400 Subject: [PATCH 04/22] updated gitignore --- .gitattributes | 0 .gitignore | 4 ++++ 2 files changed, 4 insertions(+) create mode 100644 .gitattributes diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 00000000..e69de29b diff --git a/.gitignore b/.gitignore index 0a594fd1..c3d800ee 100644 --- a/.gitignore +++ b/.gitignore @@ -10,6 +10,10 @@ ttcr_matlab/*.mex* xcuserdata/ someTests/ +ttcrpy.egg-info/ + +ttcrpy-0* + ttcrpy/__pycache__/ dynamicNodes.svg From 53988ea3216378d9f843fa3c6fa02e6f73797cb6 Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Tue, 31 Mar 2020 08:26:49 -0400 Subject: [PATCH 05/22] now use setuptools_scm for versionning --- setup.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/setup.py b/setup.py index cc1edec6..d9b73b09 100644 --- a/setup.py +++ b/setup.py @@ -63,7 +63,8 @@ setup( name='ttcrpy', - version='0.1.1', + use_scm_version=True, + setup_requires=['setuptools_scm'], description='Code to perform raytracing for geophysical applications', long_description=long_description, long_description_content_type='text/markdown', From 0212875309aa5dc1bff3b208dd7de213f44c4ffc Mon Sep 17 00:00:00 2001 From: Bernard Giroux Date: Tue, 31 Mar 2020 08:28:54 -0400 Subject: [PATCH 06/22] updated doc --- docs/_build/doctrees/code_rgrid.doctree | Bin 254849 -> 256843 bytes docs/_build/doctrees/environment.pickle | Bin 30515 -> 30747 bytes docs/_build/html/code_cgrid3d.html | 28 +++++++++++++++++++++--- docs/_build/html/code_rgrid.html | 21 +++++++++++++----- docs/_build/html/genindex.html | 2 ++ docs/_build/html/objects.inv | Bin 998 -> 1012 bytes docs/_build/html/searchindex.js | 2 +- 7 files changed, 44 insertions(+), 9 deletions(-) diff --git a/docs/_build/doctrees/code_rgrid.doctree b/docs/_build/doctrees/code_rgrid.doctree index f678a2627c7c4f565cb8f8c2e4708541c9bced54..0712bd87ddb0eef51e3825d28537bdd8bbd7644e 100644 GIT binary patch delta 979 zcmah|OGs2v7@l*E=7_>DzMZ)?SMxC!-$tR*gqF3DB#9nMlXxF?=Abj<%)Nq(z<~)8 zW)t_)X;%gcLoJku*#$!2!bOY3MJO_ANZ7)nO+nGQcS6 zBr3A)mMj!)-vQ@~3bI}doaZ;Zl-~uta9`A&vuE|KlDxt_(PqN{BkWGp(Yayh%Est} zfntGtG(#8|mnO2E#(g7Z+%vp57oWf`^4-koa~$O(-x!XzZ@|l~#~v{^pot2uGQl3d zLAF`oD6VDC#D9LT?kmfj$%Nc@zgu*dyuHBbDZr ze%uFcW%7ov*uixxMqdn{gTu@@RBXm9U8-Og9j$|0cMl`hL{_TfSU--Y^skGR!P0#8 zw*g;*xu}OPb*eQfl%&`UI-1v0I0h$PbQADC%@riJBWll2R(X zfdo)yxgTiQW40NRhT3^%9&Qb;W82f z+7nX;TWAJApRA|zYja$rTh`l)JoLvlveV@>@>X`r=J0VrX3_8f=K6Cqk#xzrGw!BU 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@@ -29,14 +31,27 @@

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