From da391f3691bb1536257b1d53662cf708a5ba3b72 Mon Sep 17 00:00:00 2001
From: Joshua McMichael <jmcmicha@wustl.edu>
Date: Tue, 22 Aug 2023 11:17:30 -0500
Subject: [PATCH 01/14] created yarn script to generate icon json data for
 input to rst gen

---
 client/package.json                           |   4 +-
 client/scripts/generate-icon-data.js          |  63 ++
 .../src/app/generated/civic.icons.data.json   | 624 ++++++++++++++++++
 client/yarn.lock                              |  85 ++-
 4 files changed, 774 insertions(+), 2 deletions(-)
 create mode 100755 client/scripts/generate-icon-data.js
 create mode 100644 client/src/app/generated/civic.icons.data.json

diff --git a/client/package.json b/client/package.json
index 7909a433a..fbd09fe02 100644
--- a/client/package.json
+++ b/client/package.json
@@ -13,7 +13,8 @@
     "generate-icon-ts": "svg-to-ts-constants",
     "generate-icons": "yarn run optimize-icon-svg && yarn run generate-icon-ts",
     "generate-apollo": "graphql-codegen",
-    "generate-apollo:start": "graphql-codegen --watch"
+    "generate-apollo:start": "graphql-codegen --watch",
+    "generate-icon-data": "scripts/generate-icon-data.js"
   },
   "private": true,
   "resolutions": {
@@ -57,6 +58,7 @@
     "@graphql-codegen/typescript-apollo-client-helpers": "^2.2.6",
     "@graphql-codegen/typescript-operations": "^2.5.12",
     "@types/node": "^12.11.1",
+    "directory-tree": "^3.5.1",
     "graphql": "^16.7.1",
     "ngx-json-viewer": "^3.0.2",
     "prettier": "^2.5.1",
diff --git a/client/scripts/generate-icon-data.js b/client/scripts/generate-icon-data.js
new file mode 100755
index 000000000..ff582406b
--- /dev/null
+++ b/client/scripts/generate-icon-data.js
@@ -0,0 +1,63 @@
+#!/usr/bin/env node
+const directoryTree = require('directory-tree')
+const path = require('path')
+const fs = require('fs')
+
+const iconsDirectory = path.join(__dirname, '..', 'src', 'assets', 'icons')
+const validSubdirectories = ['attribute', 'outline', 'twotone', 'fullcolor']
+
+// Utility to remove redundant parent directory name from the filename
+function removeRedundantName(type, filename) {
+  const pattern =
+    type === 'attribute' ? /-outline$/ : new RegExp(`-${type}$`, 'i')
+  return filename.replace(pattern, '')
+}
+
+function generateIconObject(tree) {
+  if (!tree || !tree.children) return []
+
+  return tree.children
+    .filter((child) => validSubdirectories.includes(child.name))
+    .flatMap((subdir) => {
+      return subdir.children.map((file) => {
+        const cleanName = removeRedundantName(
+          subdir.name,
+          path.basename(file.name, '.svg')
+        )
+        return {
+          type: subdir.name,
+          name: cleanName,
+          alias: `${subdir.name}-${cleanName}`,
+        }
+      })
+    })
+}
+
+const tree = directoryTree(iconsDirectory, { extensions: /\.svg$/ })
+
+if (!tree) {
+  console.error(
+    `Error: The directory ${iconsDirectory} does not exist or could not be accessed.`
+  )
+  process.exit(1)
+}
+
+const icons = generateIconObject(tree)
+const output = {
+  icons: icons,
+}
+
+// Define the path to the output file
+const outputPath = path.join(
+  __dirname,
+  '..',
+  'src',
+  'app',
+  'generated',
+  'civic.icons.data.json'
+)
+
+// Write the JSON data to the file
+fs.writeFileSync(outputPath, JSON.stringify(output, null, 2))
+
+console.log(`Data written to ${outputPath}`)
diff --git a/client/src/app/generated/civic.icons.data.json b/client/src/app/generated/civic.icons.data.json
new file mode 100644
index 000000000..cc51911fe
--- /dev/null
+++ b/client/src/app/generated/civic.icons.data.json
@@ -0,0 +1,624 @@
+{
+  "icons": [
+    {
+      "type": "attribute",
+      "name": "adverseresponse",
+      "alias": "attribute-adverseresponse"
+    },
+    {
+      "type": "attribute",
+      "name": "benign",
+      "alias": "attribute-benign"
+    },
+    {
+      "type": "attribute",
+      "name": "betteroutcome",
+      "alias": "attribute-betteroutcome"
+    },
+    {
+      "type": "attribute",
+      "name": "combination",
+      "alias": "attribute-combination"
+    },
+    {
+      "type": "attribute",
+      "name": "combined",
+      "alias": "attribute-combined"
+    },
+    {
+      "type": "attribute",
+      "name": "commongermline",
+      "alias": "attribute-commongermline"
+    },
+    {
+      "type": "attribute",
+      "name": "diagnostic",
+      "alias": "attribute-diagnostic"
+    },
+    {
+      "type": "attribute",
+      "name": "doesnotsupport",
+      "alias": "attribute-doesnotsupport"
+    },
+    {
+      "type": "attribute",
+      "name": "dominantnegative",
+      "alias": "attribute-dominantnegative"
+    },
+    {
+      "type": "attribute",
+      "name": "functional",
+      "alias": "attribute-functional"
+    },
+    {
+      "type": "attribute",
+      "name": "gainoffunction",
+      "alias": "attribute-gainoffunction"
+    },
+    {
+      "type": "attribute",
+      "name": "levela",
+      "alias": "attribute-levela"
+    },
+    {
+      "type": "attribute",
+      "name": "levelb",
+      "alias": "attribute-levelb"
+    },
+    {
+      "type": "attribute",
+      "name": "levelc",
+      "alias": "attribute-levelc"
+    },
+    {
+      "type": "attribute",
+      "name": "leveld",
+      "alias": "attribute-leveld"
+    },
+    {
+      "type": "attribute",
+      "name": "levele",
+      "alias": "attribute-levele"
+    },
+    {
+      "type": "attribute",
+      "name": "likelybenign",
+      "alias": "attribute-likelybenign"
+    },
+    {
+      "type": "attribute",
+      "name": "likelyoncogenic",
+      "alias": "attribute-likelyoncogenic"
+    },
+    {
+      "type": "attribute",
+      "name": "likelypathogenic",
+      "alias": "attribute-likelypathogenic"
+    },
+    {
+      "type": "attribute",
+      "name": "lossoffunction",
+      "alias": "attribute-lossoffunction"
+    },
+    {
+      "type": "attribute",
+      "name": "na",
+      "alias": "attribute-na"
+    },
+    {
+      "type": "attribute",
+      "name": "negative",
+      "alias": "attribute-negative"
+    },
+    {
+      "type": "attribute",
+      "name": "neomorphic",
+      "alias": "attribute-neomorphic"
+    },
+    {
+      "type": "attribute",
+      "name": "oncogenic",
+      "alias": "attribute-oncogenic"
+    },
+    {
+      "type": "attribute",
+      "name": "oncogenicity",
+      "alias": "attribute-oncogenicity"
+    },
+    {
+      "type": "attribute",
+      "name": "oncogenicsignificance",
+      "alias": "attribute-oncogenicsignificance"
+    },
+    {
+      "type": "attribute",
+      "name": "oncogenictype",
+      "alias": "attribute-oncogenictype"
+    },
+    {
+      "type": "attribute",
+      "name": "pathogenic",
+      "alias": "attribute-pathogenic"
+    },
+    {
+      "type": "attribute",
+      "name": "pooroutcome",
+      "alias": "attribute-pooroutcome"
+    },
+    {
+      "type": "attribute",
+      "name": "positive",
+      "alias": "attribute-positive"
+    },
+    {
+      "type": "attribute",
+      "name": "predictive",
+      "alias": "attribute-predictive"
+    },
+    {
+      "type": "attribute",
+      "name": "predisposing",
+      "alias": "attribute-predisposing"
+    },
+    {
+      "type": "attribute",
+      "name": "predisposition",
+      "alias": "attribute-predisposition"
+    },
+    {
+      "type": "attribute",
+      "name": "prognostic",
+      "alias": "attribute-prognostic"
+    },
+    {
+      "type": "attribute",
+      "name": "protectiveness",
+      "alias": "attribute-protectiveness"
+    },
+    {
+      "type": "attribute",
+      "name": "raregermline",
+      "alias": "attribute-raregermline"
+    },
+    {
+      "type": "attribute",
+      "name": "rating1",
+      "alias": "attribute-rating1"
+    },
+    {
+      "type": "attribute",
+      "name": "rating2",
+      "alias": "attribute-rating2"
+    },
+    {
+      "type": "attribute",
+      "name": "rating3",
+      "alias": "attribute-rating3"
+    },
+    {
+      "type": "attribute",
+      "name": "rating4",
+      "alias": "attribute-rating4"
+    },
+    {
+      "type": "attribute",
+      "name": "rating5",
+      "alias": "attribute-rating5"
+    },
+    {
+      "type": "attribute",
+      "name": "reducedsensitivity",
+      "alias": "attribute-reducedsensitivity"
+    },
+    {
+      "type": "attribute",
+      "name": "resistance",
+      "alias": "attribute-resistance"
+    },
+    {
+      "type": "attribute",
+      "name": "sensitivityresponse",
+      "alias": "attribute-sensitivityresponse"
+    },
+    {
+      "type": "attribute",
+      "name": "sequential",
+      "alias": "attribute-sequential"
+    },
+    {
+      "type": "attribute",
+      "name": "significanceunknown",
+      "alias": "attribute-significanceunknown"
+    },
+    {
+      "type": "attribute",
+      "name": "somatic",
+      "alias": "attribute-somatic"
+    },
+    {
+      "type": "attribute",
+      "name": "substitutes",
+      "alias": "attribute-substitutes"
+    },
+    {
+      "type": "attribute",
+      "name": "supports",
+      "alias": "attribute-supports"
+    },
+    {
+      "type": "attribute",
+      "name": "unalteredfunction",
+      "alias": "attribute-unalteredfunction"
+    },
+    {
+      "type": "attribute",
+      "name": "uncertainsignificance",
+      "alias": "attribute-uncertainsignificance"
+    },
+    {
+      "type": "attribute",
+      "name": "unknown",
+      "alias": "attribute-unknown"
+    },
+    {
+      "type": "fullcolor",
+      "name": "admin",
+      "alias": "fullcolor-admin"
+    },
+    {
+      "type": "fullcolor",
+      "name": "assertion",
+      "alias": "fullcolor-assertion"
+    },
+    {
+      "type": "fullcolor",
+      "name": "clinicaltrial",
+      "alias": "fullcolor-clinicaltrial"
+    },
+    {
+      "type": "fullcolor",
+      "name": "comment",
+      "alias": "fullcolor-comment"
+    },
+    {
+      "type": "fullcolor",
+      "name": "coordinatesystem",
+      "alias": "fullcolor-coordinatesystem"
+    },
+    {
+      "type": "fullcolor",
+      "name": "curator",
+      "alias": "fullcolor-curator"
+    },
+    {
+      "type": "fullcolor",
+      "name": "disease",
+      "alias": "fullcolor-disease"
+    },
+    {
+      "type": "fullcolor",
+      "name": "editor",
+      "alias": "fullcolor-editor"
+    },
+    {
+      "type": "fullcolor",
+      "name": "event",
+      "alias": "fullcolor-event"
+    },
+    {
+      "type": "fullcolor",
+      "name": "evidence",
+      "alias": "fullcolor-evidence"
+    },
+    {
+      "type": "fullcolor",
+      "name": "evidenceitem",
+      "alias": "fullcolor-evidenceitem"
+    },
+    {
+      "type": "fullcolor",
+      "name": "flag",
+      "alias": "fullcolor-flag"
+    },
+    {
+      "type": "fullcolor",
+      "name": "gene",
+      "alias": "fullcolor-gene"
+    },
+    {
+      "type": "fullcolor",
+      "name": "molecularprofile",
+      "alias": "fullcolor-molecularprofile"
+    },
+    {
+      "type": "fullcolor",
+      "name": "organization",
+      "alias": "fullcolor-organization"
+    },
+    {
+      "type": "fullcolor",
+      "name": "phenotype",
+      "alias": "fullcolor-phenotype"
+    },
+    {
+      "type": "fullcolor",
+      "name": "queue",
+      "alias": "fullcolor-queue"
+    },
+    {
+      "type": "fullcolor",
+      "name": "revision",
+      "alias": "fullcolor-revision"
+    },
+    {
+      "type": "fullcolor",
+      "name": "source",
+      "alias": "fullcolor-source"
+    },
+    {
+      "type": "fullcolor",
+      "name": "therapy",
+      "alias": "fullcolor-therapy"
+    },
+    {
+      "type": "fullcolor",
+      "name": "user",
+      "alias": "fullcolor-user"
+    },
+    {
+      "type": "fullcolor",
+      "name": "variant",
+      "alias": "fullcolor-variant"
+    },
+    {
+      "type": "fullcolor",
+      "name": "variantgroup",
+      "alias": "fullcolor-variantgroup"
+    },
+    {
+      "type": "fullcolor",
+      "name": "varianttype",
+      "alias": "fullcolor-varianttype"
+    },
+    {
+      "type": "outline",
+      "name": "admin",
+      "alias": "outline-admin"
+    },
+    {
+      "type": "outline",
+      "name": "assertion",
+      "alias": "outline-assertion"
+    },
+    {
+      "type": "outline",
+      "name": "clinicaltrial",
+      "alias": "outline-clinicaltrial"
+    },
+    {
+      "type": "outline",
+      "name": "comment",
+      "alias": "outline-comment"
+    },
+    {
+      "type": "outline",
+      "name": "coordinatesystem",
+      "alias": "outline-coordinatesystem"
+    },
+    {
+      "type": "outline",
+      "name": "curator",
+      "alias": "outline-curator"
+    },
+    {
+      "type": "outline",
+      "name": "disease",
+      "alias": "outline-disease"
+    },
+    {
+      "type": "outline",
+      "name": "editor",
+      "alias": "outline-editor"
+    },
+    {
+      "type": "outline",
+      "name": "event",
+      "alias": "outline-event"
+    },
+    {
+      "type": "outline",
+      "name": "evidence",
+      "alias": "outline-evidence"
+    },
+    {
+      "type": "outline",
+      "name": "evidenceitem",
+      "alias": "outline-evidenceitem"
+    },
+    {
+      "type": "outline",
+      "name": "flag",
+      "alias": "outline-flag"
+    },
+    {
+      "type": "outline",
+      "name": "gene",
+      "alias": "outline-gene"
+    },
+    {
+      "type": "outline",
+      "name": "molecularprofile",
+      "alias": "outline-molecularprofile"
+    },
+    {
+      "type": "outline",
+      "name": "organization",
+      "alias": "outline-organization"
+    },
+    {
+      "type": "outline",
+      "name": "phenotype",
+      "alias": "outline-phenotype"
+    },
+    {
+      "type": "outline",
+      "name": "queue",
+      "alias": "outline-queue"
+    },
+    {
+      "type": "outline",
+      "name": "revision",
+      "alias": "outline-revision"
+    },
+    {
+      "type": "outline",
+      "name": "source",
+      "alias": "outline-source"
+    },
+    {
+      "type": "outline",
+      "name": "therapy",
+      "alias": "outline-therapy"
+    },
+    {
+      "type": "outline",
+      "name": "user",
+      "alias": "outline-user"
+    },
+    {
+      "type": "outline",
+      "name": "variant",
+      "alias": "outline-variant"
+    },
+    {
+      "type": "outline",
+      "name": "variantgroup",
+      "alias": "outline-variantgroup"
+    },
+    {
+      "type": "outline",
+      "name": "varianttype",
+      "alias": "outline-varianttype"
+    },
+    {
+      "type": "twotone",
+      "name": "admin",
+      "alias": "twotone-admin"
+    },
+    {
+      "type": "twotone",
+      "name": "assertion",
+      "alias": "twotone-assertion"
+    },
+    {
+      "type": "twotone",
+      "name": "clinicaltrial",
+      "alias": "twotone-clinicaltrial"
+    },
+    {
+      "type": "twotone",
+      "name": "comment",
+      "alias": "twotone-comment"
+    },
+    {
+      "type": "twotone",
+      "name": "coordinatesystem",
+      "alias": "twotone-coordinatesystem"
+    },
+    {
+      "type": "twotone",
+      "name": "curator",
+      "alias": "twotone-curator"
+    },
+    {
+      "type": "twotone",
+      "name": "disease",
+      "alias": "twotone-disease"
+    },
+    {
+      "type": "twotone",
+      "name": "editor",
+      "alias": "twotone-editor"
+    },
+    {
+      "type": "twotone",
+      "name": "event",
+      "alias": "twotone-event"
+    },
+    {
+      "type": "twotone",
+      "name": "evidence",
+      "alias": "twotone-evidence"
+    },
+    {
+      "type": "twotone",
+      "name": "evidenceitem",
+      "alias": "twotone-evidenceitem"
+    },
+    {
+      "type": "twotone",
+      "name": "flag",
+      "alias": "twotone-flag"
+    },
+    {
+      "type": "twotone",
+      "name": "gene",
+      "alias": "twotone-gene"
+    },
+    {
+      "type": "twotone",
+      "name": "molecularprofile",
+      "alias": "twotone-molecularprofile"
+    },
+    {
+      "type": "twotone",
+      "name": "organization",
+      "alias": "twotone-organization"
+    },
+    {
+      "type": "twotone",
+      "name": "phenotype",
+      "alias": "twotone-phenotype"
+    },
+    {
+      "type": "twotone",
+      "name": "queue",
+      "alias": "twotone-queue"
+    },
+    {
+      "type": "twotone",
+      "name": "revision",
+      "alias": "twotone-revision"
+    },
+    {
+      "type": "twotone",
+      "name": "source",
+      "alias": "twotone-source"
+    },
+    {
+      "type": "twotone",
+      "name": "therapy",
+      "alias": "twotone-therapy"
+    },
+    {
+      "type": "twotone",
+      "name": "user",
+      "alias": "twotone-user"
+    },
+    {
+      "type": "twotone",
+      "name": "variant",
+      "alias": "twotone-variant"
+    },
+    {
+      "type": "twotone",
+      "name": "variantgroup",
+      "alias": "twotone-variantgroup"
+    },
+    {
+      "type": "twotone",
+      "name": "varianttype",
+      "alias": "twotone-varianttype"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/client/yarn.lock b/client/yarn.lock
index 5a673a28b..c35ab188a 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -3297,6 +3297,16 @@ argparse@^2.0.1:
   resolved "https://registry.yarnpkg.com/argparse/-/argparse-2.0.1.tgz#246f50f3ca78a3240f6c997e8a9bd1eac49e4b38"
   integrity sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==
 
+array-back@^3.0.1, array-back@^3.1.0:
+  version "3.1.0"
+  resolved "https://registry.yarnpkg.com/array-back/-/array-back-3.1.0.tgz#b8859d7a508871c9a7b2cf42f99428f65e96bfb0"
+  integrity sha512-TkuxA4UCOvxuDK6NZYXCalszEzj+TLszyASooky+i742l9TqsOdYCMJJupxRic61hwquNtppB3hgcuq9SVSH1Q==
+
+array-back@^4.0.1, array-back@^4.0.2:
+  version "4.0.2"
+  resolved "https://registry.yarnpkg.com/array-back/-/array-back-4.0.2.tgz#8004e999a6274586beeb27342168652fdb89fa1e"
+  integrity sha512-NbdMezxqf94cnNfWLL7V/im0Ub+Anbb0IoZhvzie8+4HJ4nMQuzHuy49FkGYCJK2yAloZ3meiB6AVMClbrI1vg==
+
 array-flatten@1.1.1:
   version "1.1.1"
   resolved "https://registry.yarnpkg.com/array-flatten/-/array-flatten-1.1.1.tgz#9a5f699051b1e7073328f2a008968b64ea2955d2"
@@ -3722,7 +3732,7 @@ caseless@~0.12.0:
   resolved "https://registry.yarnpkg.com/caseless/-/caseless-0.12.0.tgz#1b681c21ff84033c826543090689420d187151dc"
   integrity sha512-4tYFyifaFfGacoiObjJegolkwSU4xQNGbVgUiNYVUxbQ2x2lUsFvY4hVgVzGiIe6WLOPqycWXA40l+PWsxthUw==
 
-chalk@^2.0.0, chalk@^2.3.0:
+chalk@^2.0.0, chalk@^2.3.0, chalk@^2.4.2:
   version "2.4.2"
   resolved "https://registry.yarnpkg.com/chalk/-/chalk-2.4.2.tgz#cd42541677a54333cf541a49108c1432b44c9424"
   integrity sha512-Mti+f9lpJNcwF4tWV8/OrTTtF1gZi+f8FqlyAdouralcFWFQWF2+NgCHShjkCb+IFBLq9buZwE1xckQU4peSuQ==
@@ -3935,6 +3945,26 @@ combined-stream@^1.0.8:
   dependencies:
     delayed-stream "~1.0.0"
 
+command-line-args@^5.2.0:
+  version "5.2.1"
+  resolved "https://registry.yarnpkg.com/command-line-args/-/command-line-args-5.2.1.tgz#c44c32e437a57d7c51157696893c5909e9cec42e"
+  integrity sha512-H4UfQhZyakIjC74I9d34fGYDwk3XpSr17QhEd0Q3I9Xq1CETHo4Hcuo87WyWHpAF1aSLjLRf5lD9ZGX2qStUvg==
+  dependencies:
+    array-back "^3.1.0"
+    find-replace "^3.0.0"
+    lodash.camelcase "^4.3.0"
+    typical "^4.0.0"
+
+command-line-usage@^6.1.1:
+  version "6.1.3"
+  resolved "https://registry.yarnpkg.com/command-line-usage/-/command-line-usage-6.1.3.tgz#428fa5acde6a838779dfa30e44686f4b6761d957"
+  integrity sha512-sH5ZSPr+7UStsloltmDh7Ce5fb8XPlHyoPzTpyyMuYCtervL65+ubVZ6Q61cFtFl62UyJlc8/JwERRbAFPUqgw==
+  dependencies:
+    array-back "^4.0.2"
+    chalk "^2.4.2"
+    table-layout "^1.0.2"
+    typical "^5.2.0"
+
 commander@^2.12.1, commander@^2.20.0:
   version "2.20.3"
   resolved "https://registry.yarnpkg.com/commander/-/commander-2.20.3.tgz#fd485e84c03eb4881c20722ba48035e8531aeb33"
@@ -4268,6 +4298,11 @@ decamelize@^1.2.0:
   resolved "https://registry.yarnpkg.com/decamelize/-/decamelize-1.2.0.tgz#f6534d15148269b20352e7bee26f501f9a191290"
   integrity sha512-z2S+W9X73hAUUki+N+9Za2lBlun89zigOyGrsax+KUQ6wKW4ZoWpEYBkGhQjwAjjDCkWxhY0VKEhk8wzY7F5cA==
 
+deep-extend@~0.6.0:
+  version "0.6.0"
+  resolved "https://registry.yarnpkg.com/deep-extend/-/deep-extend-0.6.0.tgz#c4fa7c95404a17a9c3e8ca7e1537312b736330ac"
+  integrity sha512-LOHxIOaPYdHlJRtCQfDIVZtfw/ufM8+rVj649RIHzcm/vGwQRXFt6OPqIFWsm2XEMrNIEtWR64sY1LEKD2vAOA==
+
 default-gateway@^6.0.3:
   version "6.0.3"
   resolved "https://registry.yarnpkg.com/default-gateway/-/default-gateway-6.0.3.tgz#819494c888053bdb743edbf343d6cdf7f2943a71"
@@ -4339,6 +4374,14 @@ dir-glob@^3.0.1:
   dependencies:
     path-type "^4.0.0"
 
+directory-tree@^3.5.1:
+  version "3.5.1"
+  resolved "https://registry.yarnpkg.com/directory-tree/-/directory-tree-3.5.1.tgz#004d599c2478d752e7906e3a922b09c7ee2f03e2"
+  integrity sha512-HqjZ49fDzUnKYUhHxVw9eKBqbQ+lL0v4kSBInlDlaktmLtGoV9tC54a6A0ZfYeIrkMHWTE6MwwmUXP477+UEKQ==
+  dependencies:
+    command-line-args "^5.2.0"
+    command-line-usage "^6.1.1"
+
 dns-equal@^1.0.0:
   version "1.0.0"
   resolved "https://registry.yarnpkg.com/dns-equal/-/dns-equal-1.0.0.tgz#b39e7f1da6eb0a75ba9c17324b34753c47e0654d"
@@ -4817,6 +4860,13 @@ find-cache-dir@^3.3.2:
     make-dir "^3.0.2"
     pkg-dir "^4.1.0"
 
+find-replace@^3.0.0:
+  version "3.0.0"
+  resolved "https://registry.yarnpkg.com/find-replace/-/find-replace-3.0.0.tgz#3e7e23d3b05167a76f770c9fbd5258b0def68c38"
+  integrity sha512-6Tb2myMioCAgv5kfvP5/PkZZ/ntTpVK39fHY7WkWBgvbeE+VHd/tZuZ4mrC+bxh4cfOZeYKVPaJIZtZXV7GNCQ==
+  dependencies:
+    array-back "^3.0.1"
+
 find-up@^4.0.0, find-up@^4.1.0:
   version "4.1.0"
   resolved "https://registry.yarnpkg.com/find-up/-/find-up-4.1.0.tgz#97afe7d6cdc0bc5928584b7c8d7b16e8a9aa5d19"
@@ -7152,6 +7202,11 @@ readdirp@~3.6.0:
   dependencies:
     picomatch "^2.2.1"
 
+reduce-flatten@^2.0.0:
+  version "2.0.0"
+  resolved "https://registry.yarnpkg.com/reduce-flatten/-/reduce-flatten-2.0.0.tgz#734fd84e65f375d7ca4465c69798c25c9d10ae27"
+  integrity sha512-EJ4UNY/U1t2P/2k6oqotuX2Cc3T6nxJwsM0N0asT7dhrtH1ltUxDn4NalSYmPE2rCkVpcf/X6R0wDwcFpzhd4w==
+
 reflect-metadata@^0.1.2:
   version "0.1.13"
   resolved "https://registry.yarnpkg.com/reflect-metadata/-/reflect-metadata-0.1.13.tgz#67ae3ca57c972a2aa1642b10fe363fe32d49dc08"
@@ -8014,6 +8069,16 @@ symbol-observable@4.0.0, symbol-observable@^4.0.0:
   resolved "https://registry.yarnpkg.com/symbol-observable/-/symbol-observable-4.0.0.tgz#5b425f192279e87f2f9b937ac8540d1984b39205"
   integrity sha512-b19dMThMV4HVFynSAM1++gBHAbk2Tc/osgLIBZMKsyqh34jb2e8Os7T6ZW/Bt3pJFdBTd2JwAnAAEQV7rSNvcQ==
 
+table-layout@^1.0.2:
+  version "1.0.2"
+  resolved "https://registry.yarnpkg.com/table-layout/-/table-layout-1.0.2.tgz#c4038a1853b0136d63365a734b6931cf4fad4a04"
+  integrity sha512-qd/R7n5rQTRFi+Zf2sk5XVVd9UQl6ZkduPFC3S7WEGJAmetDTjY3qPN50eSKzwuzEyQKy5TN2TiZdkIjos2L6A==
+  dependencies:
+    array-back "^4.0.1"
+    deep-extend "~0.6.0"
+    typical "^5.2.0"
+    wordwrapjs "^4.0.0"
+
 tapable@^2.1.1, tapable@^2.2.0:
   version "2.2.1"
   resolved "https://registry.yarnpkg.com/tapable/-/tapable-2.2.1.tgz#1967a73ef4060a82f12ab96af86d52fdb76eeca0"
@@ -8246,6 +8311,16 @@ typescript@^4.9.4:
   resolved "https://registry.yarnpkg.com/typescript/-/typescript-4.9.4.tgz#a2a3d2756c079abda241d75f149df9d561091e78"
   integrity sha512-Uz+dTXYzxXXbsFpM86Wh3dKCxrQqUcVMxwU54orwlJjOpO3ao8L7j5lH+dWfTwgCwIuM9GQ2kvVotzYJMXTBZg==
 
+typical@^4.0.0:
+  version "4.0.0"
+  resolved "https://registry.yarnpkg.com/typical/-/typical-4.0.0.tgz#cbeaff3b9d7ae1e2bbfaf5a4e6f11eccfde94fc4"
+  integrity sha512-VAH4IvQ7BDFYglMd7BPRDfLgxZZX4O4TFcRDA6EN5X7erNJJq+McIEp8np9aVtxrCJ6qx4GTYVfOWNjcqwZgRw==
+
+typical@^5.2.0:
+  version "5.2.0"
+  resolved "https://registry.yarnpkg.com/typical/-/typical-5.2.0.tgz#4daaac4f2b5315460804f0acf6cb69c52bb93066"
+  integrity sha512-dvdQgNDNJo+8B2uBQoqdb11eUCE1JQXhvjC/CZtgvZseVd5TYMXnq0+vuUemXbd/Se29cTaUuPX3YIc2xgbvIg==
+
 ua-parser-js@^0.7.30:
   version "0.7.33"
   resolved "https://registry.yarnpkg.com/ua-parser-js/-/ua-parser-js-0.7.33.tgz#1d04acb4ccef9293df6f70f2c3d22f3030d8b532"
@@ -8660,6 +8735,14 @@ wildcard@^2.0.0:
   resolved "https://registry.yarnpkg.com/wildcard/-/wildcard-2.0.0.tgz#a77d20e5200c6faaac979e4b3aadc7b3dd7f8fec"
   integrity sha512-JcKqAHLPxcdb9KM49dufGXn2x3ssnfjbcaQdLlfZsL9rH9wgDQjUtDxbo8NE0F6SFvydeu1VhZe7hZuHsB2/pw==
 
+wordwrapjs@^4.0.0:
+  version "4.0.1"
+  resolved "https://registry.yarnpkg.com/wordwrapjs/-/wordwrapjs-4.0.1.tgz#d9790bccfb110a0fc7836b5ebce0937b37a8b98f"
+  integrity sha512-kKlNACbvHrkpIw6oPeYDSmdCTu2hdMHoyXLTcUKala++lx5Y+wjJ/e474Jqv5abnVmwxw08DiTuHmw69lJGksA==
+  dependencies:
+    reduce-flatten "^2.0.0"
+    typical "^5.2.0"
+
 "wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
   version "7.0.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"

From a8c7474c7edcd71fef01d39d1d4c08af85f6a3ac Mon Sep 17 00:00:00 2001
From: Joshua McMichael <jmcmicha@wustl.edu>
Date: Tue, 22 Aug 2023 12:43:35 -0500
Subject: [PATCH 02/14] created script to generate rst aliases for icons

---
 client/package.json                           |   4 +-
 client/scripts/generate-icon-data.js          |   1 +
 client/scripts/generate-icon-rst.js           |  48 +
 .../src/app/generated/civic-docs.aliases.rst  | 995 ++++++++++++++++++
 .../src/app/generated/civic.icons.data.json   | 124 +++
 client/yarn.lock                              |   5 +
 6 files changed, 1176 insertions(+), 1 deletion(-)
 create mode 100755 client/scripts/generate-icon-rst.js
 create mode 100644 client/src/app/generated/civic-docs.aliases.rst

diff --git a/client/package.json b/client/package.json
index fbd09fe02..3596f2049 100644
--- a/client/package.json
+++ b/client/package.json
@@ -14,7 +14,8 @@
     "generate-icons": "yarn run optimize-icon-svg && yarn run generate-icon-ts",
     "generate-apollo": "graphql-codegen",
     "generate-apollo:start": "graphql-codegen --watch",
-    "generate-icon-data": "scripts/generate-icon-data.js"
+    "generate-icon-data": "scripts/generate-icon-data.js",
+    "generate-icon-rst": "scripts/generate-icon-rst.js"
   },
   "private": true,
   "resolutions": {
@@ -60,6 +61,7 @@
     "@types/node": "^12.11.1",
     "directory-tree": "^3.5.1",
     "graphql": "^16.7.1",
+    "mustache": "^4.2.0",
     "ngx-json-viewer": "^3.0.2",
     "prettier": "^2.5.1",
     "svg-to-ts": "^9.0.0",
diff --git a/client/scripts/generate-icon-data.js b/client/scripts/generate-icon-data.js
index ff582406b..ce07a2dc3 100755
--- a/client/scripts/generate-icon-data.js
+++ b/client/scripts/generate-icon-data.js
@@ -26,6 +26,7 @@ function generateIconObject(tree) {
         )
         return {
           type: subdir.name,
+          filepath: `${subdir.name}/${file.name}`,
           name: cleanName,
           alias: `${subdir.name}-${cleanName}`,
         }
diff --git a/client/scripts/generate-icon-rst.js b/client/scripts/generate-icon-rst.js
new file mode 100755
index 000000000..0ab59f27f
--- /dev/null
+++ b/client/scripts/generate-icon-rst.js
@@ -0,0 +1,48 @@
+#!/usr/bin/env node
+const fs = require('fs')
+const path = require('path')
+const mustache = require('mustache')
+
+// Load the generated icon data JSON
+const jsonDataPath = path.join(
+  __dirname,
+  '..',
+  'src',
+  'app',
+  'generated',
+  'civic.icons.data.json'
+)
+const iconData = JSON.parse(fs.readFileSync(jsonDataPath, 'utf-8'))
+
+// Define the mustache template
+const template = `
+.. |{{alias}}| image:: /images/icons/{{{filepath}}}
+   :class: 'cvc-icon'
+.. |{{alias}}-sm| image:: /images/icons/{{{filepath}}}
+   :class: 'cvc-icon-sm'
+.. |{{alias}}-lg| image:: /images/icons/{{{filepath}}}
+   :class: 'cvc-icon-lg'
+`
+
+// Render the RST using mustache
+const renderedRst =
+  '..\n   ' +
+  'GENERATED BY CiVIC CLIENT DEV SCRIPT, DO NOT EDIT\n   ' +
+  '(unless you know what you are doing)\n   ' +
+  'Produced by `generate-icon-rst` script in civic-v2/client/scripts\n' +
+  iconData.icons.map((icon) => mustache.render(template, icon)).join('\n')
+
+// Define the path to the output RST file
+const outputPath = path.join(
+  __dirname,
+  '..',
+  'src',
+  'app',
+  'generated',
+  'civic-docs.aliases.rst'
+)
+
+// Write the rendered RST to the file
+fs.writeFileSync(outputPath, renderedRst)
+
+console.log(`RST written to ${outputPath}`)
diff --git a/client/src/app/generated/civic-docs.aliases.rst b/client/src/app/generated/civic-docs.aliases.rst
new file mode 100644
index 000000000..1b7ffccef
--- /dev/null
+++ b/client/src/app/generated/civic-docs.aliases.rst
@@ -0,0 +1,995 @@
+..
+   GENERATED BY CiVIC v2 CLIENT SCRIPT, DO NOT EDIT
+   (unless you know what you are doing)
+   Produced by `generate-icon-rst` script in civic-v2/client project
+
+.. |attribute-adverseresponse| image:: /images/icons/attribute/adverseresponse-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-adverseresponse-sm| image:: /images/icons/attribute/adverseresponse-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-adverseresponse-lg| image:: /images/icons/attribute/adverseresponse-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-benign| image:: /images/icons/attribute/benign-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-benign-sm| image:: /images/icons/attribute/benign-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-benign-lg| image:: /images/icons/attribute/benign-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-betteroutcome| image:: /images/icons/attribute/betteroutcome-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-betteroutcome-sm| image:: /images/icons/attribute/betteroutcome-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-betteroutcome-lg| image:: /images/icons/attribute/betteroutcome-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-combination| image:: /images/icons/attribute/combination-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-combination-sm| image:: /images/icons/attribute/combination-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-combination-lg| image:: /images/icons/attribute/combination-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-combined| image:: /images/icons/attribute/combined-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-combined-sm| image:: /images/icons/attribute/combined-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-combined-lg| image:: /images/icons/attribute/combined-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-commongermline| image:: /images/icons/attribute/commongermline-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-commongermline-sm| image:: /images/icons/attribute/commongermline-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-commongermline-lg| image:: /images/icons/attribute/commongermline-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-diagnostic| image:: /images/icons/attribute/diagnostic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-diagnostic-sm| image:: /images/icons/attribute/diagnostic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-diagnostic-lg| image:: /images/icons/attribute/diagnostic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-doesnotsupport| image:: /images/icons/attribute/doesnotsupport-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-doesnotsupport-sm| image:: /images/icons/attribute/doesnotsupport-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-doesnotsupport-lg| image:: /images/icons/attribute/doesnotsupport-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-dominantnegative| image:: /images/icons/attribute/dominantnegative-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-dominantnegative-sm| image:: /images/icons/attribute/dominantnegative-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-dominantnegative-lg| image:: /images/icons/attribute/dominantnegative-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-functional| image:: /images/icons/attribute/functional-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-functional-sm| image:: /images/icons/attribute/functional-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-functional-lg| image:: /images/icons/attribute/functional-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-gainoffunction| image:: /images/icons/attribute/gainoffunction-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-gainoffunction-sm| image:: /images/icons/attribute/gainoffunction-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-gainoffunction-lg| image:: /images/icons/attribute/gainoffunction-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-levela| image:: /images/icons/attribute/levela-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-levela-sm| image:: /images/icons/attribute/levela-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-levela-lg| image:: /images/icons/attribute/levela-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-levelb| image:: /images/icons/attribute/levelb-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-levelb-sm| image:: /images/icons/attribute/levelb-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-levelb-lg| image:: /images/icons/attribute/levelb-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-levelc| image:: /images/icons/attribute/levelc-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-levelc-sm| image:: /images/icons/attribute/levelc-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-levelc-lg| image:: /images/icons/attribute/levelc-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-leveld| image:: /images/icons/attribute/leveld-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-leveld-sm| image:: /images/icons/attribute/leveld-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-leveld-lg| image:: /images/icons/attribute/leveld-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-levele| image:: /images/icons/attribute/levele-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-levele-sm| image:: /images/icons/attribute/levele-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-levele-lg| image:: /images/icons/attribute/levele-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-likelybenign| image:: /images/icons/attribute/likelybenign-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-likelybenign-sm| image:: /images/icons/attribute/likelybenign-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-likelybenign-lg| image:: /images/icons/attribute/likelybenign-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-likelyoncogenic| image:: /images/icons/attribute/likelyoncogenic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-likelyoncogenic-sm| image:: /images/icons/attribute/likelyoncogenic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-likelyoncogenic-lg| image:: /images/icons/attribute/likelyoncogenic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-likelypathogenic| image:: /images/icons/attribute/likelypathogenic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-likelypathogenic-sm| image:: /images/icons/attribute/likelypathogenic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-likelypathogenic-lg| image:: /images/icons/attribute/likelypathogenic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-lossoffunction| image:: /images/icons/attribute/lossoffunction-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-lossoffunction-sm| image:: /images/icons/attribute/lossoffunction-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-lossoffunction-lg| image:: /images/icons/attribute/lossoffunction-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-na| image:: /images/icons/attribute/na-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-na-sm| image:: /images/icons/attribute/na-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-na-lg| image:: /images/icons/attribute/na-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-negative| image:: /images/icons/attribute/negative-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-negative-sm| image:: /images/icons/attribute/negative-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-negative-lg| image:: /images/icons/attribute/negative-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-neomorphic| image:: /images/icons/attribute/neomorphic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-neomorphic-sm| image:: /images/icons/attribute/neomorphic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-neomorphic-lg| image:: /images/icons/attribute/neomorphic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-oncogenic| image:: /images/icons/attribute/oncogenic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-oncogenic-sm| image:: /images/icons/attribute/oncogenic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-oncogenic-lg| image:: /images/icons/attribute/oncogenic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-oncogenicity| image:: /images/icons/attribute/oncogenicity-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-oncogenicity-sm| image:: /images/icons/attribute/oncogenicity-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-oncogenicity-lg| image:: /images/icons/attribute/oncogenicity-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-oncogenicsignificance| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-oncogenicsignificance-sm| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-oncogenicsignificance-lg| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-oncogenictype| image:: /images/icons/attribute/oncogenictype-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-oncogenictype-sm| image:: /images/icons/attribute/oncogenictype-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-oncogenictype-lg| image:: /images/icons/attribute/oncogenictype-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-pathogenic| image:: /images/icons/attribute/pathogenic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-pathogenic-sm| image:: /images/icons/attribute/pathogenic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-pathogenic-lg| image:: /images/icons/attribute/pathogenic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-pooroutcome| image:: /images/icons/attribute/pooroutcome-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-pooroutcome-sm| image:: /images/icons/attribute/pooroutcome-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-pooroutcome-lg| image:: /images/icons/attribute/pooroutcome-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-positive| image:: /images/icons/attribute/positive-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-positive-sm| image:: /images/icons/attribute/positive-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-positive-lg| image:: /images/icons/attribute/positive-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-predictive| image:: /images/icons/attribute/predictive-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-predictive-sm| image:: /images/icons/attribute/predictive-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-predictive-lg| image:: /images/icons/attribute/predictive-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-predisposing| image:: /images/icons/attribute/predisposing-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-predisposing-sm| image:: /images/icons/attribute/predisposing-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-predisposing-lg| image:: /images/icons/attribute/predisposing-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-predisposition| image:: /images/icons/attribute/predisposition-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-predisposition-sm| image:: /images/icons/attribute/predisposition-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-predisposition-lg| image:: /images/icons/attribute/predisposition-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-prognostic| image:: /images/icons/attribute/prognostic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-prognostic-sm| image:: /images/icons/attribute/prognostic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-prognostic-lg| image:: /images/icons/attribute/prognostic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-protectiveness| image:: /images/icons/attribute/protectiveness-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-protectiveness-sm| image:: /images/icons/attribute/protectiveness-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-protectiveness-lg| image:: /images/icons/attribute/protectiveness-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-raregermline| image:: /images/icons/attribute/raregermline-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-raregermline-sm| image:: /images/icons/attribute/raregermline-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-raregermline-lg| image:: /images/icons/attribute/raregermline-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-rating1| image:: /images/icons/attribute/rating1-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-rating1-sm| image:: /images/icons/attribute/rating1-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-rating1-lg| image:: /images/icons/attribute/rating1-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-rating2| image:: /images/icons/attribute/rating2-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-rating2-sm| image:: /images/icons/attribute/rating2-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-rating2-lg| image:: /images/icons/attribute/rating2-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-rating3| image:: /images/icons/attribute/rating3-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-rating3-sm| image:: /images/icons/attribute/rating3-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-rating3-lg| image:: /images/icons/attribute/rating3-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-rating4| image:: /images/icons/attribute/rating4-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-rating4-sm| image:: /images/icons/attribute/rating4-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-rating4-lg| image:: /images/icons/attribute/rating4-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-rating5| image:: /images/icons/attribute/rating5-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-rating5-sm| image:: /images/icons/attribute/rating5-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-rating5-lg| image:: /images/icons/attribute/rating5-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-reducedsensitivity| image:: /images/icons/attribute/reducedsensitivity-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-reducedsensitivity-sm| image:: /images/icons/attribute/reducedsensitivity-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-reducedsensitivity-lg| image:: /images/icons/attribute/reducedsensitivity-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-resistance| image:: /images/icons/attribute/resistance-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-resistance-sm| image:: /images/icons/attribute/resistance-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-resistance-lg| image:: /images/icons/attribute/resistance-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-sensitivityresponse| image:: /images/icons/attribute/sensitivityresponse-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-sensitivityresponse-sm| image:: /images/icons/attribute/sensitivityresponse-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-sensitivityresponse-lg| image:: /images/icons/attribute/sensitivityresponse-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-sequential| image:: /images/icons/attribute/sequential-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-sequential-sm| image:: /images/icons/attribute/sequential-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-sequential-lg| image:: /images/icons/attribute/sequential-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-significanceunknown| image:: /images/icons/attribute/significanceunknown-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-significanceunknown-sm| image:: /images/icons/attribute/significanceunknown-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-significanceunknown-lg| image:: /images/icons/attribute/significanceunknown-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-somatic| image:: /images/icons/attribute/somatic-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-somatic-sm| image:: /images/icons/attribute/somatic-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-somatic-lg| image:: /images/icons/attribute/somatic-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-substitutes| image:: /images/icons/attribute/substitutes-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-substitutes-sm| image:: /images/icons/attribute/substitutes-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-substitutes-lg| image:: /images/icons/attribute/substitutes-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-supports| image:: /images/icons/attribute/supports-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-supports-sm| image:: /images/icons/attribute/supports-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-supports-lg| image:: /images/icons/attribute/supports-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-unalteredfunction| image:: /images/icons/attribute/unalteredfunction-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-unalteredfunction-sm| image:: /images/icons/attribute/unalteredfunction-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-unalteredfunction-lg| image:: /images/icons/attribute/unalteredfunction-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-uncertainsignificance| image:: /images/icons/attribute/uncertainsignificance-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-uncertainsignificance-sm| image:: /images/icons/attribute/uncertainsignificance-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-uncertainsignificance-lg| image:: /images/icons/attribute/uncertainsignificance-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |attribute-unknown| image:: /images/icons/attribute/unknown-outline.svg
+   :class: 'cvc-icon'
+.. |attribute-unknown-sm| image:: /images/icons/attribute/unknown-outline.svg
+   :class: 'cvc-icon-sm'
+.. |attribute-unknown-lg| image:: /images/icons/attribute/unknown-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-admin| image:: /images/icons/fullcolor/admin-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-admin-sm| image:: /images/icons/fullcolor/admin-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-admin-lg| image:: /images/icons/fullcolor/admin-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-assertion| image:: /images/icons/fullcolor/assertion-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-assertion-sm| image:: /images/icons/fullcolor/assertion-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-assertion-lg| image:: /images/icons/fullcolor/assertion-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-clinicaltrial| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-clinicaltrial-sm| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-clinicaltrial-lg| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-comment| image:: /images/icons/fullcolor/comment-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-comment-sm| image:: /images/icons/fullcolor/comment-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-comment-lg| image:: /images/icons/fullcolor/comment-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-coordinatesystem| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-coordinatesystem-sm| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-coordinatesystem-lg| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-curator| image:: /images/icons/fullcolor/curator-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-curator-sm| image:: /images/icons/fullcolor/curator-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-curator-lg| image:: /images/icons/fullcolor/curator-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-disease| image:: /images/icons/fullcolor/disease-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-disease-sm| image:: /images/icons/fullcolor/disease-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-disease-lg| image:: /images/icons/fullcolor/disease-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-editor| image:: /images/icons/fullcolor/editor-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-editor-sm| image:: /images/icons/fullcolor/editor-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-editor-lg| image:: /images/icons/fullcolor/editor-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-event| image:: /images/icons/fullcolor/event-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-event-sm| image:: /images/icons/fullcolor/event-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-event-lg| image:: /images/icons/fullcolor/event-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-evidence| image:: /images/icons/fullcolor/evidence-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-evidence-sm| image:: /images/icons/fullcolor/evidence-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-evidence-lg| image:: /images/icons/fullcolor/evidence-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-evidenceitem| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-evidenceitem-sm| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-evidenceitem-lg| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-flag| image:: /images/icons/fullcolor/flag-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-flag-sm| image:: /images/icons/fullcolor/flag-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-flag-lg| image:: /images/icons/fullcolor/flag-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-gene| image:: /images/icons/fullcolor/gene-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-gene-sm| image:: /images/icons/fullcolor/gene-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-gene-lg| image:: /images/icons/fullcolor/gene-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-molecularprofile| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-molecularprofile-sm| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-molecularprofile-lg| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-organization| image:: /images/icons/fullcolor/organization-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-organization-sm| image:: /images/icons/fullcolor/organization-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-organization-lg| image:: /images/icons/fullcolor/organization-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-phenotype| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-phenotype-sm| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-phenotype-lg| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-queue| image:: /images/icons/fullcolor/queue-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-queue-sm| image:: /images/icons/fullcolor/queue-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-queue-lg| image:: /images/icons/fullcolor/queue-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-revision| image:: /images/icons/fullcolor/revision-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-revision-sm| image:: /images/icons/fullcolor/revision-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-revision-lg| image:: /images/icons/fullcolor/revision-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-source| image:: /images/icons/fullcolor/source-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-source-sm| image:: /images/icons/fullcolor/source-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-source-lg| image:: /images/icons/fullcolor/source-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-therapy| image:: /images/icons/fullcolor/therapy-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-therapy-sm| image:: /images/icons/fullcolor/therapy-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-therapy-lg| image:: /images/icons/fullcolor/therapy-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-user| image:: /images/icons/fullcolor/user-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-user-sm| image:: /images/icons/fullcolor/user-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-user-lg| image:: /images/icons/fullcolor/user-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-variant| image:: /images/icons/fullcolor/variant.svg
+   :class: 'cvc-icon'
+.. |fullcolor-variant-sm| image:: /images/icons/fullcolor/variant.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-variant-lg| image:: /images/icons/fullcolor/variant.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-variantgroup| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-variantgroup-sm| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-variantgroup-lg| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |fullcolor-varianttype| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
+   :class: 'cvc-icon'
+.. |fullcolor-varianttype-sm| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
+   :class: 'cvc-icon-sm'
+.. |fullcolor-varianttype-lg| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-admin| image:: /images/icons/outline/admin-outline.svg
+   :class: 'cvc-icon'
+.. |outline-admin-sm| image:: /images/icons/outline/admin-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-admin-lg| image:: /images/icons/outline/admin-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-assertion| image:: /images/icons/outline/assertion-outline.svg
+   :class: 'cvc-icon'
+.. |outline-assertion-sm| image:: /images/icons/outline/assertion-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-assertion-lg| image:: /images/icons/outline/assertion-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-clinicaltrial| image:: /images/icons/outline/clinicaltrial-outline.svg
+   :class: 'cvc-icon'
+.. |outline-clinicaltrial-sm| image:: /images/icons/outline/clinicaltrial-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-clinicaltrial-lg| image:: /images/icons/outline/clinicaltrial-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-comment| image:: /images/icons/outline/comment-outline.svg
+   :class: 'cvc-icon'
+.. |outline-comment-sm| image:: /images/icons/outline/comment-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-comment-lg| image:: /images/icons/outline/comment-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-coordinatesystem| image:: /images/icons/outline/coordinatesystem-outline.svg
+   :class: 'cvc-icon'
+.. |outline-coordinatesystem-sm| image:: /images/icons/outline/coordinatesystem-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-coordinatesystem-lg| image:: /images/icons/outline/coordinatesystem-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-curator| image:: /images/icons/outline/curator-outline.svg
+   :class: 'cvc-icon'
+.. |outline-curator-sm| image:: /images/icons/outline/curator-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-curator-lg| image:: /images/icons/outline/curator-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-disease| image:: /images/icons/outline/disease-outline.svg
+   :class: 'cvc-icon'
+.. |outline-disease-sm| image:: /images/icons/outline/disease-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-disease-lg| image:: /images/icons/outline/disease-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-editor| image:: /images/icons/outline/editor-outline.svg
+   :class: 'cvc-icon'
+.. |outline-editor-sm| image:: /images/icons/outline/editor-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-editor-lg| image:: /images/icons/outline/editor-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-event| image:: /images/icons/outline/event-outline.svg
+   :class: 'cvc-icon'
+.. |outline-event-sm| image:: /images/icons/outline/event-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-event-lg| image:: /images/icons/outline/event-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-evidence| image:: /images/icons/outline/evidence-outline.svg
+   :class: 'cvc-icon'
+.. |outline-evidence-sm| image:: /images/icons/outline/evidence-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-evidence-lg| image:: /images/icons/outline/evidence-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-evidenceitem| image:: /images/icons/outline/evidenceitem-outline.svg
+   :class: 'cvc-icon'
+.. |outline-evidenceitem-sm| image:: /images/icons/outline/evidenceitem-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-evidenceitem-lg| image:: /images/icons/outline/evidenceitem-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-flag| image:: /images/icons/outline/flag-outline.svg
+   :class: 'cvc-icon'
+.. |outline-flag-sm| image:: /images/icons/outline/flag-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-flag-lg| image:: /images/icons/outline/flag-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-gene| image:: /images/icons/outline/gene-outline.svg
+   :class: 'cvc-icon'
+.. |outline-gene-sm| image:: /images/icons/outline/gene-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-gene-lg| image:: /images/icons/outline/gene-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-molecularprofile| image:: /images/icons/outline/molecularprofile-outline.svg
+   :class: 'cvc-icon'
+.. |outline-molecularprofile-sm| image:: /images/icons/outline/molecularprofile-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-molecularprofile-lg| image:: /images/icons/outline/molecularprofile-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-organization| image:: /images/icons/outline/organization-outline.svg
+   :class: 'cvc-icon'
+.. |outline-organization-sm| image:: /images/icons/outline/organization-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-organization-lg| image:: /images/icons/outline/organization-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-phenotype| image:: /images/icons/outline/phenotype-outline.svg
+   :class: 'cvc-icon'
+.. |outline-phenotype-sm| image:: /images/icons/outline/phenotype-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-phenotype-lg| image:: /images/icons/outline/phenotype-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-queue| image:: /images/icons/outline/queue-outline.svg
+   :class: 'cvc-icon'
+.. |outline-queue-sm| image:: /images/icons/outline/queue-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-queue-lg| image:: /images/icons/outline/queue-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-revision| image:: /images/icons/outline/revision-outline.svg
+   :class: 'cvc-icon'
+.. |outline-revision-sm| image:: /images/icons/outline/revision-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-revision-lg| image:: /images/icons/outline/revision-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-source| image:: /images/icons/outline/source-outline.svg
+   :class: 'cvc-icon'
+.. |outline-source-sm| image:: /images/icons/outline/source-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-source-lg| image:: /images/icons/outline/source-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-therapy| image:: /images/icons/outline/therapy-outline.svg
+   :class: 'cvc-icon'
+.. |outline-therapy-sm| image:: /images/icons/outline/therapy-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-therapy-lg| image:: /images/icons/outline/therapy-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-user| image:: /images/icons/outline/user-outline.svg
+   :class: 'cvc-icon'
+.. |outline-user-sm| image:: /images/icons/outline/user-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-user-lg| image:: /images/icons/outline/user-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-variant| image:: /images/icons/outline/variant-outline.svg
+   :class: 'cvc-icon'
+.. |outline-variant-sm| image:: /images/icons/outline/variant-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-variant-lg| image:: /images/icons/outline/variant-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-variantgroup| image:: /images/icons/outline/variantgroup-outline.svg
+   :class: 'cvc-icon'
+.. |outline-variantgroup-sm| image:: /images/icons/outline/variantgroup-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-variantgroup-lg| image:: /images/icons/outline/variantgroup-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |outline-varianttype| image:: /images/icons/outline/varianttype-outline.svg
+   :class: 'cvc-icon'
+.. |outline-varianttype-sm| image:: /images/icons/outline/varianttype-outline.svg
+   :class: 'cvc-icon-sm'
+.. |outline-varianttype-lg| image:: /images/icons/outline/varianttype-outline.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-admin| image:: /images/icons/twotone/admin-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-admin-sm| image:: /images/icons/twotone/admin-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-admin-lg| image:: /images/icons/twotone/admin-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-assertion| image:: /images/icons/twotone/assertion-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-assertion-sm| image:: /images/icons/twotone/assertion-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-assertion-lg| image:: /images/icons/twotone/assertion-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-clinicaltrial| image:: /images/icons/twotone/clinicaltrial-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-clinicaltrial-sm| image:: /images/icons/twotone/clinicaltrial-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-clinicaltrial-lg| image:: /images/icons/twotone/clinicaltrial-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-comment| image:: /images/icons/twotone/comment-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-comment-sm| image:: /images/icons/twotone/comment-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-comment-lg| image:: /images/icons/twotone/comment-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-coordinatesystem| image:: /images/icons/twotone/coordinatesystem-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-coordinatesystem-sm| image:: /images/icons/twotone/coordinatesystem-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-coordinatesystem-lg| image:: /images/icons/twotone/coordinatesystem-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-curator| image:: /images/icons/twotone/curator-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-curator-sm| image:: /images/icons/twotone/curator-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-curator-lg| image:: /images/icons/twotone/curator-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-disease| image:: /images/icons/twotone/disease-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-disease-sm| image:: /images/icons/twotone/disease-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-disease-lg| image:: /images/icons/twotone/disease-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-editor| image:: /images/icons/twotone/editor-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-editor-sm| image:: /images/icons/twotone/editor-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-editor-lg| image:: /images/icons/twotone/editor-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-event| image:: /images/icons/twotone/event-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-event-sm| image:: /images/icons/twotone/event-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-event-lg| image:: /images/icons/twotone/event-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-evidence| image:: /images/icons/twotone/evidence-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-evidence-sm| image:: /images/icons/twotone/evidence-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-evidence-lg| image:: /images/icons/twotone/evidence-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-evidenceitem| image:: /images/icons/twotone/evidenceitem-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-evidenceitem-sm| image:: /images/icons/twotone/evidenceitem-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-evidenceitem-lg| image:: /images/icons/twotone/evidenceitem-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-flag| image:: /images/icons/twotone/flag-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-flag-sm| image:: /images/icons/twotone/flag-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-flag-lg| image:: /images/icons/twotone/flag-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-gene| image:: /images/icons/twotone/gene-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-gene-sm| image:: /images/icons/twotone/gene-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-gene-lg| image:: /images/icons/twotone/gene-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-molecularprofile| image:: /images/icons/twotone/molecularprofile-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-molecularprofile-sm| image:: /images/icons/twotone/molecularprofile-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-molecularprofile-lg| image:: /images/icons/twotone/molecularprofile-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-organization| image:: /images/icons/twotone/organization-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-organization-sm| image:: /images/icons/twotone/organization-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-organization-lg| image:: /images/icons/twotone/organization-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-phenotype| image:: /images/icons/twotone/phenotype-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-phenotype-sm| image:: /images/icons/twotone/phenotype-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-phenotype-lg| image:: /images/icons/twotone/phenotype-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-queue| image:: /images/icons/twotone/queue-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-queue-sm| image:: /images/icons/twotone/queue-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-queue-lg| image:: /images/icons/twotone/queue-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-revision| image:: /images/icons/twotone/revision-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-revision-sm| image:: /images/icons/twotone/revision-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-revision-lg| image:: /images/icons/twotone/revision-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-source| image:: /images/icons/twotone/source-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-source-sm| image:: /images/icons/twotone/source-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-source-lg| image:: /images/icons/twotone/source-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-therapy| image:: /images/icons/twotone/therapy-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-therapy-sm| image:: /images/icons/twotone/therapy-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-therapy-lg| image:: /images/icons/twotone/therapy-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-user| image:: /images/icons/twotone/user-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-user-sm| image:: /images/icons/twotone/user-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-user-lg| image:: /images/icons/twotone/user-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-variant| image:: /images/icons/twotone/variant-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-variant-sm| image:: /images/icons/twotone/variant-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-variant-lg| image:: /images/icons/twotone/variant-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-variantgroup| image:: /images/icons/twotone/variantgroup-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-variantgroup-sm| image:: /images/icons/twotone/variantgroup-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-variantgroup-lg| image:: /images/icons/twotone/variantgroup-twotone.svg
+   :class: 'cvc-icon-lg'
+
+
+.. |twotone-varianttype| image:: /images/icons/twotone/varianttype-twotone.svg
+   :class: 'cvc-icon'
+.. |twotone-varianttype-sm| image:: /images/icons/twotone/varianttype-twotone.svg
+   :class: 'cvc-icon-sm'
+.. |twotone-varianttype-lg| image:: /images/icons/twotone/varianttype-twotone.svg
+   :class: 'cvc-icon-lg'
diff --git a/client/src/app/generated/civic.icons.data.json b/client/src/app/generated/civic.icons.data.json
index cc51911fe..59f0eeb33 100644
--- a/client/src/app/generated/civic.icons.data.json
+++ b/client/src/app/generated/civic.icons.data.json
@@ -2,621 +2,745 @@
   "icons": [
     {
       "type": "attribute",
+      "filepath": "attribute/adverseresponse-outline.svg",
       "name": "adverseresponse",
       "alias": "attribute-adverseresponse"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/benign-outline.svg",
       "name": "benign",
       "alias": "attribute-benign"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/betteroutcome-outline.svg",
       "name": "betteroutcome",
       "alias": "attribute-betteroutcome"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/combination-outline.svg",
       "name": "combination",
       "alias": "attribute-combination"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/combined-outline.svg",
       "name": "combined",
       "alias": "attribute-combined"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/commongermline-outline.svg",
       "name": "commongermline",
       "alias": "attribute-commongermline"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/diagnostic-outline.svg",
       "name": "diagnostic",
       "alias": "attribute-diagnostic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/doesnotsupport-outline.svg",
       "name": "doesnotsupport",
       "alias": "attribute-doesnotsupport"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/dominantnegative-outline.svg",
       "name": "dominantnegative",
       "alias": "attribute-dominantnegative"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/functional-outline.svg",
       "name": "functional",
       "alias": "attribute-functional"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/gainoffunction-outline.svg",
       "name": "gainoffunction",
       "alias": "attribute-gainoffunction"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/levela-outline.svg",
       "name": "levela",
       "alias": "attribute-levela"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/levelb-outline.svg",
       "name": "levelb",
       "alias": "attribute-levelb"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/levelc-outline.svg",
       "name": "levelc",
       "alias": "attribute-levelc"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/leveld-outline.svg",
       "name": "leveld",
       "alias": "attribute-leveld"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/levele-outline.svg",
       "name": "levele",
       "alias": "attribute-levele"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/likelybenign-outline.svg",
       "name": "likelybenign",
       "alias": "attribute-likelybenign"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/likelyoncogenic-outline.svg",
       "name": "likelyoncogenic",
       "alias": "attribute-likelyoncogenic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/likelypathogenic-outline.svg",
       "name": "likelypathogenic",
       "alias": "attribute-likelypathogenic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/lossoffunction-outline.svg",
       "name": "lossoffunction",
       "alias": "attribute-lossoffunction"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/na-outline.svg",
       "name": "na",
       "alias": "attribute-na"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/negative-outline.svg",
       "name": "negative",
       "alias": "attribute-negative"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/neomorphic-outline.svg",
       "name": "neomorphic",
       "alias": "attribute-neomorphic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/oncogenic-outline.svg",
       "name": "oncogenic",
       "alias": "attribute-oncogenic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/oncogenicity-outline.svg",
       "name": "oncogenicity",
       "alias": "attribute-oncogenicity"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/oncogenicsignificance-outline.svg",
       "name": "oncogenicsignificance",
       "alias": "attribute-oncogenicsignificance"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/oncogenictype-outline.svg",
       "name": "oncogenictype",
       "alias": "attribute-oncogenictype"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/pathogenic-outline.svg",
       "name": "pathogenic",
       "alias": "attribute-pathogenic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/pooroutcome-outline.svg",
       "name": "pooroutcome",
       "alias": "attribute-pooroutcome"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/positive-outline.svg",
       "name": "positive",
       "alias": "attribute-positive"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/predictive-outline.svg",
       "name": "predictive",
       "alias": "attribute-predictive"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/predisposing-outline.svg",
       "name": "predisposing",
       "alias": "attribute-predisposing"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/predisposition-outline.svg",
       "name": "predisposition",
       "alias": "attribute-predisposition"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/prognostic-outline.svg",
       "name": "prognostic",
       "alias": "attribute-prognostic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/protectiveness-outline.svg",
       "name": "protectiveness",
       "alias": "attribute-protectiveness"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/raregermline-outline.svg",
       "name": "raregermline",
       "alias": "attribute-raregermline"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/rating1-outline.svg",
       "name": "rating1",
       "alias": "attribute-rating1"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/rating2-outline.svg",
       "name": "rating2",
       "alias": "attribute-rating2"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/rating3-outline.svg",
       "name": "rating3",
       "alias": "attribute-rating3"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/rating4-outline.svg",
       "name": "rating4",
       "alias": "attribute-rating4"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/rating5-outline.svg",
       "name": "rating5",
       "alias": "attribute-rating5"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/reducedsensitivity-outline.svg",
       "name": "reducedsensitivity",
       "alias": "attribute-reducedsensitivity"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/resistance-outline.svg",
       "name": "resistance",
       "alias": "attribute-resistance"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/sensitivityresponse-outline.svg",
       "name": "sensitivityresponse",
       "alias": "attribute-sensitivityresponse"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/sequential-outline.svg",
       "name": "sequential",
       "alias": "attribute-sequential"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/significanceunknown-outline.svg",
       "name": "significanceunknown",
       "alias": "attribute-significanceunknown"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/somatic-outline.svg",
       "name": "somatic",
       "alias": "attribute-somatic"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/substitutes-outline.svg",
       "name": "substitutes",
       "alias": "attribute-substitutes"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/supports-outline.svg",
       "name": "supports",
       "alias": "attribute-supports"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/unalteredfunction-outline.svg",
       "name": "unalteredfunction",
       "alias": "attribute-unalteredfunction"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/uncertainsignificance-outline.svg",
       "name": "uncertainsignificance",
       "alias": "attribute-uncertainsignificance"
     },
     {
       "type": "attribute",
+      "filepath": "attribute/unknown-outline.svg",
       "name": "unknown",
       "alias": "attribute-unknown"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/admin-fullcolor.svg",
       "name": "admin",
       "alias": "fullcolor-admin"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/assertion-fullcolor.svg",
       "name": "assertion",
       "alias": "fullcolor-assertion"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/clinicaltrial-fullcolor.svg",
       "name": "clinicaltrial",
       "alias": "fullcolor-clinicaltrial"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/comment-fullcolor.svg",
       "name": "comment",
       "alias": "fullcolor-comment"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/coordinatesystem-fullcolor.svg",
       "name": "coordinatesystem",
       "alias": "fullcolor-coordinatesystem"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/curator-fullcolor.svg",
       "name": "curator",
       "alias": "fullcolor-curator"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/disease-fullcolor.svg",
       "name": "disease",
       "alias": "fullcolor-disease"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/editor-fullcolor.svg",
       "name": "editor",
       "alias": "fullcolor-editor"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/event-fullcolor.svg",
       "name": "event",
       "alias": "fullcolor-event"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/evidence-fullcolor.svg",
       "name": "evidence",
       "alias": "fullcolor-evidence"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/evidenceitem-fullcolor.svg",
       "name": "evidenceitem",
       "alias": "fullcolor-evidenceitem"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/flag-fullcolor.svg",
       "name": "flag",
       "alias": "fullcolor-flag"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/gene-fullcolor.svg",
       "name": "gene",
       "alias": "fullcolor-gene"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/molecularprofile-fullcolor.svg",
       "name": "molecularprofile",
       "alias": "fullcolor-molecularprofile"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/organization-fullcolor.svg",
       "name": "organization",
       "alias": "fullcolor-organization"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/phenotype-fullcolor.svg",
       "name": "phenotype",
       "alias": "fullcolor-phenotype"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/queue-fullcolor.svg",
       "name": "queue",
       "alias": "fullcolor-queue"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/revision-fullcolor.svg",
       "name": "revision",
       "alias": "fullcolor-revision"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/source-fullcolor.svg",
       "name": "source",
       "alias": "fullcolor-source"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/therapy-fullcolor.svg",
       "name": "therapy",
       "alias": "fullcolor-therapy"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/user-fullcolor.svg",
       "name": "user",
       "alias": "fullcolor-user"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/variant.svg",
       "name": "variant",
       "alias": "fullcolor-variant"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/variantgroup-fullcolor.svg",
       "name": "variantgroup",
       "alias": "fullcolor-variantgroup"
     },
     {
       "type": "fullcolor",
+      "filepath": "fullcolor/varianttype-fullcolor.svg",
       "name": "varianttype",
       "alias": "fullcolor-varianttype"
     },
     {
       "type": "outline",
+      "filepath": "outline/admin-outline.svg",
       "name": "admin",
       "alias": "outline-admin"
     },
     {
       "type": "outline",
+      "filepath": "outline/assertion-outline.svg",
       "name": "assertion",
       "alias": "outline-assertion"
     },
     {
       "type": "outline",
+      "filepath": "outline/clinicaltrial-outline.svg",
       "name": "clinicaltrial",
       "alias": "outline-clinicaltrial"
     },
     {
       "type": "outline",
+      "filepath": "outline/comment-outline.svg",
       "name": "comment",
       "alias": "outline-comment"
     },
     {
       "type": "outline",
+      "filepath": "outline/coordinatesystem-outline.svg",
       "name": "coordinatesystem",
       "alias": "outline-coordinatesystem"
     },
     {
       "type": "outline",
+      "filepath": "outline/curator-outline.svg",
       "name": "curator",
       "alias": "outline-curator"
     },
     {
       "type": "outline",
+      "filepath": "outline/disease-outline.svg",
       "name": "disease",
       "alias": "outline-disease"
     },
     {
       "type": "outline",
+      "filepath": "outline/editor-outline.svg",
       "name": "editor",
       "alias": "outline-editor"
     },
     {
       "type": "outline",
+      "filepath": "outline/event-outline.svg",
       "name": "event",
       "alias": "outline-event"
     },
     {
       "type": "outline",
+      "filepath": "outline/evidence-outline.svg",
       "name": "evidence",
       "alias": "outline-evidence"
     },
     {
       "type": "outline",
+      "filepath": "outline/evidenceitem-outline.svg",
       "name": "evidenceitem",
       "alias": "outline-evidenceitem"
     },
     {
       "type": "outline",
+      "filepath": "outline/flag-outline.svg",
       "name": "flag",
       "alias": "outline-flag"
     },
     {
       "type": "outline",
+      "filepath": "outline/gene-outline.svg",
       "name": "gene",
       "alias": "outline-gene"
     },
     {
       "type": "outline",
+      "filepath": "outline/molecularprofile-outline.svg",
       "name": "molecularprofile",
       "alias": "outline-molecularprofile"
     },
     {
       "type": "outline",
+      "filepath": "outline/organization-outline.svg",
       "name": "organization",
       "alias": "outline-organization"
     },
     {
       "type": "outline",
+      "filepath": "outline/phenotype-outline.svg",
       "name": "phenotype",
       "alias": "outline-phenotype"
     },
     {
       "type": "outline",
+      "filepath": "outline/queue-outline.svg",
       "name": "queue",
       "alias": "outline-queue"
     },
     {
       "type": "outline",
+      "filepath": "outline/revision-outline.svg",
       "name": "revision",
       "alias": "outline-revision"
     },
     {
       "type": "outline",
+      "filepath": "outline/source-outline.svg",
       "name": "source",
       "alias": "outline-source"
     },
     {
       "type": "outline",
+      "filepath": "outline/therapy-outline.svg",
       "name": "therapy",
       "alias": "outline-therapy"
     },
     {
       "type": "outline",
+      "filepath": "outline/user-outline.svg",
       "name": "user",
       "alias": "outline-user"
     },
     {
       "type": "outline",
+      "filepath": "outline/variant-outline.svg",
       "name": "variant",
       "alias": "outline-variant"
     },
     {
       "type": "outline",
+      "filepath": "outline/variantgroup-outline.svg",
       "name": "variantgroup",
       "alias": "outline-variantgroup"
     },
     {
       "type": "outline",
+      "filepath": "outline/varianttype-outline.svg",
       "name": "varianttype",
       "alias": "outline-varianttype"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/admin-twotone.svg",
       "name": "admin",
       "alias": "twotone-admin"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/assertion-twotone.svg",
       "name": "assertion",
       "alias": "twotone-assertion"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/clinicaltrial-twotone.svg",
       "name": "clinicaltrial",
       "alias": "twotone-clinicaltrial"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/comment-twotone.svg",
       "name": "comment",
       "alias": "twotone-comment"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/coordinatesystem-twotone.svg",
       "name": "coordinatesystem",
       "alias": "twotone-coordinatesystem"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/curator-twotone.svg",
       "name": "curator",
       "alias": "twotone-curator"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/disease-twotone.svg",
       "name": "disease",
       "alias": "twotone-disease"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/editor-twotone.svg",
       "name": "editor",
       "alias": "twotone-editor"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/event-twotone.svg",
       "name": "event",
       "alias": "twotone-event"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/evidence-twotone.svg",
       "name": "evidence",
       "alias": "twotone-evidence"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/evidenceitem-twotone.svg",
       "name": "evidenceitem",
       "alias": "twotone-evidenceitem"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/flag-twotone.svg",
       "name": "flag",
       "alias": "twotone-flag"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/gene-twotone.svg",
       "name": "gene",
       "alias": "twotone-gene"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/molecularprofile-twotone.svg",
       "name": "molecularprofile",
       "alias": "twotone-molecularprofile"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/organization-twotone.svg",
       "name": "organization",
       "alias": "twotone-organization"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/phenotype-twotone.svg",
       "name": "phenotype",
       "alias": "twotone-phenotype"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/queue-twotone.svg",
       "name": "queue",
       "alias": "twotone-queue"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/revision-twotone.svg",
       "name": "revision",
       "alias": "twotone-revision"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/source-twotone.svg",
       "name": "source",
       "alias": "twotone-source"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/therapy-twotone.svg",
       "name": "therapy",
       "alias": "twotone-therapy"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/user-twotone.svg",
       "name": "user",
       "alias": "twotone-user"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/variant-twotone.svg",
       "name": "variant",
       "alias": "twotone-variant"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/variantgroup-twotone.svg",
       "name": "variantgroup",
       "alias": "twotone-variantgroup"
     },
     {
       "type": "twotone",
+      "filepath": "twotone/varianttype-twotone.svg",
       "name": "varianttype",
       "alias": "twotone-varianttype"
     }
diff --git a/client/yarn.lock b/client/yarn.lock
index c35ab188a..e51f195f4 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -6357,6 +6357,11 @@ multicast-dns@^7.2.5:
     dns-packet "^5.2.2"
     thunky "^1.0.2"
 
+mustache@^4.2.0:
+  version "4.2.0"
+  resolved "https://registry.yarnpkg.com/mustache/-/mustache-4.2.0.tgz#e5892324d60a12ec9c2a73359edca52972bf6f64"
+  integrity sha512-71ippSywq5Yb7/tVYyGbkBggbU8H3u5Rz56fH60jGFgr8uHwxs+aSKeqmluIVzM0m0kB7xQjKS6qPfd0b2ZoqQ==
+
 mute-stream@0.0.8:
   version "0.0.8"
   resolved "https://registry.yarnpkg.com/mute-stream/-/mute-stream-0.0.8.tgz#1630c42b2251ff81e2a283de96a5497ea92e5e0d"

From b7447bc1bf2b5b4b574fe7536efb0709aa393d4d Mon Sep 17 00:00:00 2001
From: Joshua McMichael <jmcmicha@wustl.edu>
Date: Tue, 22 Aug 2023 15:47:08 -0500
Subject: [PATCH 03/14] generate-rst script now will update civic-docs aliases
 rst if found

---
 client/scripts/generate-icon-data.js          |   4 +-
 client/scripts/generate-icon-rst.js           | 128 ++++++++++++++++--
 .../src/app/generated/civic-docs.aliases.rst  |   4 +-
 3 files changed, 117 insertions(+), 19 deletions(-)

diff --git a/client/scripts/generate-icon-data.js b/client/scripts/generate-icon-data.js
index ce07a2dc3..a8380adf6 100755
--- a/client/scripts/generate-icon-data.js
+++ b/client/scripts/generate-icon-data.js
@@ -38,7 +38,7 @@ const tree = directoryTree(iconsDirectory, { extensions: /\.svg$/ })
 
 if (!tree) {
   console.error(
-    `Error: The directory ${iconsDirectory} does not exist or could not be accessed.`
+    `Error: The icon assets folder ${iconsDirectory} does not exist or could not be accessed.`
   )
   process.exit(1)
 }
@@ -61,4 +61,4 @@ const outputPath = path.join(
 // Write the JSON data to the file
 fs.writeFileSync(outputPath, JSON.stringify(output, null, 2))
 
-console.log(`Data written to ${outputPath}`)
+console.log(`Icon data written to ${outputPath}`)
diff --git a/client/scripts/generate-icon-rst.js b/client/scripts/generate-icon-rst.js
index 0ab59f27f..8917c1047 100755
--- a/client/scripts/generate-icon-rst.js
+++ b/client/scripts/generate-icon-rst.js
@@ -1,10 +1,55 @@
 #!/usr/bin/env node
+const directoryTree = require('directory-tree')
 const fs = require('fs')
 const path = require('path')
+const readline = require('readline')
 const mustache = require('mustache')
 
-// Load the generated icon data JSON
-const jsonDataPath = path.join(
+const iconsDirectory = path.join(__dirname, '..', 'src', 'assets', 'icons')
+const validSubdirectories = ['attribute', 'outline', 'twotone', 'fullcolor']
+
+function removeRedundantName(type, filename) {
+  const pattern =
+    type === 'attribute' ? /-outline$/ : new RegExp(`-${type}$`, 'i')
+  return filename.replace(pattern, '')
+}
+
+function generateIconObject(tree) {
+  if (!tree || !tree.children) return []
+
+  return tree.children
+    .filter((child) => validSubdirectories.includes(child.name))
+    .flatMap((subdir) => {
+      return subdir.children.map((file) => {
+        const cleanName = removeRedundantName(
+          subdir.name,
+          path.basename(file.name, '.svg')
+        )
+        return {
+          type: subdir.name,
+          filepath: `${subdir.name}/${file.name}`,
+          name: cleanName,
+          alias: `${subdir.name}-${cleanName}`,
+        }
+      })
+    })
+}
+
+const tree = directoryTree(iconsDirectory, { extensions: /\.svg$/ })
+
+if (!tree) {
+  console.error(
+    `Error: The directory ${iconsDirectory} does not exist or could not be accessed.`
+  )
+  process.exit(1)
+}
+
+const icons = generateIconObject(tree)
+const output = {
+  icons: icons,
+}
+
+const outputPath = path.join(
   __dirname,
   '..',
   'src',
@@ -12,7 +57,14 @@ const jsonDataPath = path.join(
   'generated',
   'civic.icons.data.json'
 )
-const iconData = JSON.parse(fs.readFileSync(jsonDataPath, 'utf-8'))
+fs.writeFileSync(outputPath, JSON.stringify(output, null, 2))
+console.log(`Data written to ${outputPath}`)
+
+// New part for checking civic-docs repository and generating RST
+
+const docsRepoPath = path.join(__dirname, '..', '..', '..', 'civic-docs')
+const targetDirectory = path.join(docsRepoPath, 'docs', 'generated')
+const targetFile = path.join(targetDirectory, 'civic-docs.aliases.rst')
 
 // Define the mustache template
 const template = `
@@ -32,17 +84,63 @@ const renderedRst =
   'Produced by `generate-icon-rst` script in civic-v2/client/scripts\n' +
   iconData.icons.map((icon) => mustache.render(template, icon)).join('\n')
 
-// Define the path to the output RST file
-const outputPath = path.join(
-  __dirname,
-  '..',
-  'src',
-  'app',
-  'generated',
-  'civic-docs.aliases.rst'
-)
+const rl = readline.createInterface({
+  input: process.stdin,
+  output: process.stdout,
+})
+
+async function promptUser(question) {
+  return new Promise((resolve) => {
+    rl.question(question, (answer) => {
+      const lowercasedAnswer = answer.toLowerCase()
+      if (['y', 'yes', ''].includes(lowercasedAnswer)) {
+        resolve(true)
+      } else if (['n', 'no'].includes(lowercasedAnswer)) {
+        resolve(false)
+      } else {
+        console.log(
+          "Invalid response. Please answer with 'y', 'yes', 'n', or 'no'."
+        )
+        resolve(promptUser(question)) // re-prompt if invalid response
+      }
+    })
+  })
+}
 
-// Write the rendered RST to the file
-fs.writeFileSync(outputPath, renderedRst)
+;(async function () {
+  if (fs.existsSync(docsRepoPath)) {
+    if (fs.existsSync(targetDirectory)) {
+      if (fs.existsSync(targetFile)) {
+        const answer = await promptUser(
+          'civic-docs/generated/civic-docs.aliases.rst exists, overwrite? (Y/n) '
+        )
+        if (answer) {
+          fs.writeFileSync(targetFile, renderedRst)
+          console.log(`Overwrote ${targetFile}`)
+        } else {
+          console.log('Did not overwrite the file.')
+        }
+      } else {
+        fs.writeFileSync(targetFile, renderedRst)
+        console.log(`Wrote to ${targetFile}`)
+      }
+    } else {
+      const answer = await promptUser(
+        'Create civic-docs/generated directory and write civic-docs.aliases.rst file? (Y/n) '
+      )
+      if (answer) {
+        fs.mkdirSync(targetDirectory, { recursive: true })
+        fs.writeFileSync(targetFile, renderedRst)
+        console.log(`Created directory and wrote to ${targetFile}`)
+      } else {
+        console.log('Did not create the directory or write the file.')
+      }
+    }
+  } else {
+    console.log(
+      `No civic-docs repository found at ${docsRepoPath}. Will not write civic-docs.aliases.rst file.`
+    )
+  }
 
-console.log(`RST written to ${outputPath}`)
+  rl.close()
+})()
diff --git a/client/src/app/generated/civic-docs.aliases.rst b/client/src/app/generated/civic-docs.aliases.rst
index 1b7ffccef..c57dd71b6 100644
--- a/client/src/app/generated/civic-docs.aliases.rst
+++ b/client/src/app/generated/civic-docs.aliases.rst
@@ -1,7 +1,7 @@
 ..
-   GENERATED BY CiVIC v2 CLIENT SCRIPT, DO NOT EDIT
+   GENERATED BY CiVIC CLIENT DEV SCRIPT, DO NOT EDIT
    (unless you know what you are doing)
-   Produced by `generate-icon-rst` script in civic-v2/client project
+   Produced by `generate-icon-rst` script in civic-v2/client/scripts
 
 .. |attribute-adverseresponse| image:: /images/icons/attribute/adverseresponse-outline.svg
    :class: 'cvc-icon'

From f6509381ad8c4b86b1ba97c9e23acde3c2e739bb Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Wed, 23 Aug 2023 08:20:52 -0500
Subject: [PATCH 04/14] remove legacy scope methods from v1

---
 server/app/models/user.rb | 20 --------------------
 1 file changed, 20 deletions(-)

diff --git a/server/app/models/user.rb b/server/app/models/user.rb
index fdf72cf3a..38bf5cae3 100644
--- a/server/app/models/user.rb
+++ b/server/app/models/user.rb
@@ -40,26 +40,6 @@ class User < ActiveRecord::Base
   validates :profile_image, content_type: ['image/png', 'image/jpg', 'image/jpeg'],
     size: { less_than: 5.megabytes , message: 'Image must be smaller than 15MB' }
 
-  def self.datatable_scope
-    joins('LEFT OUTER JOIN events ON events.originating_user_id = users.id')
-      .joins('LEFT OUTER JOIN affiliations ON users.id = affiliations.user_id')
-      .joins('LEFT OUTER JOIN organizations ON affiliations.organization_id = organizations.id')
-      .includes(:badge_awards, domain_expert_tags: [:domain_of_expertise])
-  end
-
-  def self.index_scope
-    includes(:organizations, :most_recent_conflict_of_interest_statement, domain_expert_tags: [:domain_of_expertise])
-  end
-
-  def self.view_scope
-    includes(:organizations, :badge_awards, :most_recent_conflict_of_interest_statement, domain_expert_tags: [:domain_of_expertise])
-  end
-
-  def self.domain_experts_scope
-    joins(:domain_expert_tags)
-      .includes(domain_expert_tags: [:domain_of_expertise])
-  end
-
   def self.create_from_omniauth(auth_hash, authorization)
     auth_provider_adaptor(auth_hash['provider']).create_from_omniauth(auth_hash).tap do |user|
       user.authorizations << authorization

From 7c5453f4748b840fc2a62a8360a734ab3de73a99 Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Wed, 23 Aug 2023 09:41:55 -0500
Subject: [PATCH 05/14] add a little validation and hinting for proper social
 media handle entry

---
 .../forms/user-profile/user-profile.form.html | 46 ++++++++++++-------
 .../forms/user-profile/user-profile.module.ts |  2 +
 server/app/graphql/mutations/edit_user.rb     | 12 +++--
 server/app/models/user.rb                     | 10 ++++
 4 files changed, 48 insertions(+), 22 deletions(-)

diff --git a/client/src/app/forms/user-profile/user-profile.form.html b/client/src/app/forms/user-profile/user-profile.form.html
index febc1026b..0d1419291 100644
--- a/client/src/app/forms/user-profile/user-profile.form.html
+++ b/client/src/app/forms/user-profile/user-profile.form.html
@@ -71,10 +71,13 @@
     </nz-form-item>
     <nz-form-item>
       <nz-form-label>ORCID Identifier</nz-form-label>
-      <input
-        nz-input
-        [(ngModel)]="this.orcid"
-        style="width: 100%" />
+      <nz-input-group nzAddOnBefore="https://orcid.org/">
+        <input
+          nz-input
+          placeholder="0000-0000-0000-0000"
+          [(ngModel)]="this.orcid"
+          style="width: 100%" />
+      </nz-input-group>
     </nz-form-item>
     <nz-form-item>
       <nz-form-label>Personal Website</nz-form-label>
@@ -84,25 +87,34 @@
         style="width: 100%" />
     </nz-form-item>
     <nz-form-item>
-      <nz-form-label>Twitter Handle</nz-form-label>
-      <input
-        nz-input
-        [(ngModel)]="this.twitterHandle"
-        style="width: 100%" />
+      <nz-form-label>X/Twitter Handle</nz-form-label>
+      <nz-input-group nzAddOnBefore="https://twitter.com/">
+        <input
+          nz-input
+          placeholder="username"
+          [(ngModel)]="this.twitterHandle"
+          style="width: 100%" />
+      </nz-input-group>
     </nz-form-item>
     <nz-form-item>
       <nz-form-label>Facebook Profile</nz-form-label>
-      <input
-        nz-input
-        [(ngModel)]="this.facebookProfile"
-        style="width: 100%" />
+      <nz-input-group nzAddOnBefore="https://www.facebook.com/">
+        <input
+          nz-input
+          placeholder="username"
+          [(ngModel)]="this.facebookProfile"
+          style="width: 100%" />
+        </nz-input-group>
     </nz-form-item>
     <nz-form-item>
       <nz-form-label>LinkedIn Profile</nz-form-label>
-      <input
-        nz-input
-        [(ngModel)]="this.linkedinProfile"
-        style="width: 100%" />
+      <nz-input-group nzAddOnBefore="https://www.linkedin.com/in/">
+        <input
+          nz-input
+          placeholder="username"
+          [(ngModel)]="this.linkedinProfile"
+          style="width: 100%" />
+      </nz-input-group>
     </nz-form-item>
     <nz-form-item>
       <button
diff --git a/client/src/app/forms/user-profile/user-profile.module.ts b/client/src/app/forms/user-profile/user-profile.module.ts
index 1e1278342..30eb794cd 100644
--- a/client/src/app/forms/user-profile/user-profile.module.ts
+++ b/client/src/app/forms/user-profile/user-profile.module.ts
@@ -11,6 +11,7 @@ import { NzRadioModule } from 'ng-zorro-antd/radio'
 import { NzSpinModule } from 'ng-zorro-antd/spin'
 import { NzButtonModule } from 'ng-zorro-antd/button'
 import { NzSelectModule } from 'ng-zorro-antd/select'
+import { NzInputModule } from 'ng-zorro-antd/input'
 
 @NgModule({
   declarations: [CvcUserProfileForm],
@@ -27,6 +28,7 @@ import { NzSelectModule } from 'ng-zorro-antd/select'
     NzButtonModule,
     NzSpinModule,
     NzSelectModule,
+    NzInputModule,
     CvcFormErrorsAlertModule,
   ],
   exports: [CvcUserProfileForm],
diff --git a/server/app/graphql/mutations/edit_user.rb b/server/app/graphql/mutations/edit_user.rb
index c87dd85cd..8c437c54d 100644
--- a/server/app/graphql/mutations/edit_user.rb
+++ b/server/app/graphql/mutations/edit_user.rb
@@ -39,10 +39,12 @@ def authorized?(**_)
   def resolve(**args)
     current_user = context[:current_user]
 
-    current_user.update!(args)
-
-    return {
-      user: current_user
-    }
+    if current_user.update(args)
+      return {
+        user: current_user
+      }
+    else
+      raise GraphQL::ExecutionError, current_user.errors.full_messages.join(", ")
+    end
   end
 end
diff --git a/server/app/models/user.rb b/server/app/models/user.rb
index 38bf5cae3..d3300a289 100644
--- a/server/app/models/user.rb
+++ b/server/app/models/user.rb
@@ -34,6 +34,7 @@ class User < ActiveRecord::Base
   validates :username, format: { without: /\s|@/, message: 'cannot contain whitespace or @ symbols' }
   validate :username_is_not_role_name
   validate :require_email_for_editors
+  validate :social_media_handles
   after_create :assign_default_username
 
   has_one_attached :profile_image
@@ -104,6 +105,15 @@ def require_email_for_editors
     end
   end
 
+  def social_media_handles
+    [:twitter_handle, :orcid, :facebook_profile, :linkedin_profile].each do |platform|
+      username = self.send(platform)
+      if username.present?
+        self.errors.add(platform, 'should not contain the URL, only your username') if username.include?('/')
+      end
+    end
+  end
+
   def self.timepoint_query
     ->(x) {
       self.joins(:events)

From e43c33815af7569fa499558ee24061526fda0aa0 Mon Sep 17 00:00:00 2001
From: Joshua McMichael <jmcmicha@wustl.edu>
Date: Wed, 23 Aug 2023 09:54:20 -0500
Subject: [PATCH 06/14] removed civic.docs-aliases.rst overwrite in civic-docs
 repo logic

---
 client/scripts/generate-icon-rst.js           | 134 +----
 .../src/app/generated/civic-docs.aliases.rst  | 496 -----------------
 .../src/app/generated/civic.docs-aliases.rst  | 499 ++++++++++++++++++
 3 files changed, 516 insertions(+), 613 deletions(-)
 create mode 100644 client/src/app/generated/civic.docs-aliases.rst

diff --git a/client/scripts/generate-icon-rst.js b/client/scripts/generate-icon-rst.js
index 8917c1047..91af6a284 100755
--- a/client/scripts/generate-icon-rst.js
+++ b/client/scripts/generate-icon-rst.js
@@ -1,55 +1,10 @@
 #!/usr/bin/env node
-const directoryTree = require('directory-tree')
 const fs = require('fs')
 const path = require('path')
-const readline = require('readline')
 const mustache = require('mustache')
 
-const iconsDirectory = path.join(__dirname, '..', 'src', 'assets', 'icons')
-const validSubdirectories = ['attribute', 'outline', 'twotone', 'fullcolor']
-
-function removeRedundantName(type, filename) {
-  const pattern =
-    type === 'attribute' ? /-outline$/ : new RegExp(`-${type}$`, 'i')
-  return filename.replace(pattern, '')
-}
-
-function generateIconObject(tree) {
-  if (!tree || !tree.children) return []
-
-  return tree.children
-    .filter((child) => validSubdirectories.includes(child.name))
-    .flatMap((subdir) => {
-      return subdir.children.map((file) => {
-        const cleanName = removeRedundantName(
-          subdir.name,
-          path.basename(file.name, '.svg')
-        )
-        return {
-          type: subdir.name,
-          filepath: `${subdir.name}/${file.name}`,
-          name: cleanName,
-          alias: `${subdir.name}-${cleanName}`,
-        }
-      })
-    })
-}
-
-const tree = directoryTree(iconsDirectory, { extensions: /\.svg$/ })
-
-if (!tree) {
-  console.error(
-    `Error: The directory ${iconsDirectory} does not exist or could not be accessed.`
-  )
-  process.exit(1)
-}
-
-const icons = generateIconObject(tree)
-const output = {
-  icons: icons,
-}
-
-const outputPath = path.join(
+// Load the generated icon data JSON
+const jsonDataPath = path.join(
   __dirname,
   '..',
   'src',
@@ -57,23 +12,12 @@ const outputPath = path.join(
   'generated',
   'civic.icons.data.json'
 )
-fs.writeFileSync(outputPath, JSON.stringify(output, null, 2))
-console.log(`Data written to ${outputPath}`)
-
-// New part for checking civic-docs repository and generating RST
-
-const docsRepoPath = path.join(__dirname, '..', '..', '..', 'civic-docs')
-const targetDirectory = path.join(docsRepoPath, 'docs', 'generated')
-const targetFile = path.join(targetDirectory, 'civic-docs.aliases.rst')
+const iconData = JSON.parse(fs.readFileSync(jsonDataPath, 'utf-8'))
 
 // Define the mustache template
 const template = `
 .. |{{alias}}| image:: /images/icons/{{{filepath}}}
    :class: 'cvc-icon'
-.. |{{alias}}-sm| image:: /images/icons/{{{filepath}}}
-   :class: 'cvc-icon-sm'
-.. |{{alias}}-lg| image:: /images/icons/{{{filepath}}}
-   :class: 'cvc-icon-lg'
 `
 
 // Render the RST using mustache
@@ -84,63 +28,19 @@ const renderedRst =
   'Produced by `generate-icon-rst` script in civic-v2/client/scripts\n' +
   iconData.icons.map((icon) => mustache.render(template, icon)).join('\n')
 
-const rl = readline.createInterface({
-  input: process.stdin,
-  output: process.stdout,
-})
-
-async function promptUser(question) {
-  return new Promise((resolve) => {
-    rl.question(question, (answer) => {
-      const lowercasedAnswer = answer.toLowerCase()
-      if (['y', 'yes', ''].includes(lowercasedAnswer)) {
-        resolve(true)
-      } else if (['n', 'no'].includes(lowercasedAnswer)) {
-        resolve(false)
-      } else {
-        console.log(
-          "Invalid response. Please answer with 'y', 'yes', 'n', or 'no'."
-        )
-        resolve(promptUser(question)) // re-prompt if invalid response
-      }
-    })
-  })
-}
+// Define the path to the output RST file
+const outputPath = path.join(
+  __dirname,
+  '..',
+  'src',
+  'app',
+  'generated',
+  'civic.docs-aliases.rst'
+)
 
-;(async function () {
-  if (fs.existsSync(docsRepoPath)) {
-    if (fs.existsSync(targetDirectory)) {
-      if (fs.existsSync(targetFile)) {
-        const answer = await promptUser(
-          'civic-docs/generated/civic-docs.aliases.rst exists, overwrite? (Y/n) '
-        )
-        if (answer) {
-          fs.writeFileSync(targetFile, renderedRst)
-          console.log(`Overwrote ${targetFile}`)
-        } else {
-          console.log('Did not overwrite the file.')
-        }
-      } else {
-        fs.writeFileSync(targetFile, renderedRst)
-        console.log(`Wrote to ${targetFile}`)
-      }
-    } else {
-      const answer = await promptUser(
-        'Create civic-docs/generated directory and write civic-docs.aliases.rst file? (Y/n) '
-      )
-      if (answer) {
-        fs.mkdirSync(targetDirectory, { recursive: true })
-        fs.writeFileSync(targetFile, renderedRst)
-        console.log(`Created directory and wrote to ${targetFile}`)
-      } else {
-        console.log('Did not create the directory or write the file.')
-      }
-    }
-  } else {
-    console.log(
-      `No civic-docs repository found at ${docsRepoPath}. Will not write civic-docs.aliases.rst file.`
-    )
-  }
+// Write the rendered RST to the file
+fs.writeFileSync(outputPath, renderedRst)
 
-  rl.close()
-})()
+console.log(
+  `RST written to ${outputPath}, copy to civic-docs/docs/generated to update docs aliases.`
+)
diff --git a/client/src/app/generated/civic-docs.aliases.rst b/client/src/app/generated/civic-docs.aliases.rst
index c57dd71b6..eb2594792 100644
--- a/client/src/app/generated/civic-docs.aliases.rst
+++ b/client/src/app/generated/civic-docs.aliases.rst
@@ -5,991 +5,495 @@
 
 .. |attribute-adverseresponse| image:: /images/icons/attribute/adverseresponse-outline.svg
    :class: 'cvc-icon'
-.. |attribute-adverseresponse-sm| image:: /images/icons/attribute/adverseresponse-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-adverseresponse-lg| image:: /images/icons/attribute/adverseresponse-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-benign| image:: /images/icons/attribute/benign-outline.svg
    :class: 'cvc-icon'
-.. |attribute-benign-sm| image:: /images/icons/attribute/benign-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-benign-lg| image:: /images/icons/attribute/benign-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-betteroutcome| image:: /images/icons/attribute/betteroutcome-outline.svg
    :class: 'cvc-icon'
-.. |attribute-betteroutcome-sm| image:: /images/icons/attribute/betteroutcome-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-betteroutcome-lg| image:: /images/icons/attribute/betteroutcome-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-combination| image:: /images/icons/attribute/combination-outline.svg
    :class: 'cvc-icon'
-.. |attribute-combination-sm| image:: /images/icons/attribute/combination-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-combination-lg| image:: /images/icons/attribute/combination-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-combined| image:: /images/icons/attribute/combined-outline.svg
    :class: 'cvc-icon'
-.. |attribute-combined-sm| image:: /images/icons/attribute/combined-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-combined-lg| image:: /images/icons/attribute/combined-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-commongermline| image:: /images/icons/attribute/commongermline-outline.svg
    :class: 'cvc-icon'
-.. |attribute-commongermline-sm| image:: /images/icons/attribute/commongermline-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-commongermline-lg| image:: /images/icons/attribute/commongermline-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-diagnostic| image:: /images/icons/attribute/diagnostic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-diagnostic-sm| image:: /images/icons/attribute/diagnostic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-diagnostic-lg| image:: /images/icons/attribute/diagnostic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-doesnotsupport| image:: /images/icons/attribute/doesnotsupport-outline.svg
    :class: 'cvc-icon'
-.. |attribute-doesnotsupport-sm| image:: /images/icons/attribute/doesnotsupport-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-doesnotsupport-lg| image:: /images/icons/attribute/doesnotsupport-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-dominantnegative| image:: /images/icons/attribute/dominantnegative-outline.svg
    :class: 'cvc-icon'
-.. |attribute-dominantnegative-sm| image:: /images/icons/attribute/dominantnegative-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-dominantnegative-lg| image:: /images/icons/attribute/dominantnegative-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-functional| image:: /images/icons/attribute/functional-outline.svg
    :class: 'cvc-icon'
-.. |attribute-functional-sm| image:: /images/icons/attribute/functional-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-functional-lg| image:: /images/icons/attribute/functional-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-gainoffunction| image:: /images/icons/attribute/gainoffunction-outline.svg
    :class: 'cvc-icon'
-.. |attribute-gainoffunction-sm| image:: /images/icons/attribute/gainoffunction-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-gainoffunction-lg| image:: /images/icons/attribute/gainoffunction-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-levela| image:: /images/icons/attribute/levela-outline.svg
    :class: 'cvc-icon'
-.. |attribute-levela-sm| image:: /images/icons/attribute/levela-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-levela-lg| image:: /images/icons/attribute/levela-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-levelb| image:: /images/icons/attribute/levelb-outline.svg
    :class: 'cvc-icon'
-.. |attribute-levelb-sm| image:: /images/icons/attribute/levelb-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-levelb-lg| image:: /images/icons/attribute/levelb-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-levelc| image:: /images/icons/attribute/levelc-outline.svg
    :class: 'cvc-icon'
-.. |attribute-levelc-sm| image:: /images/icons/attribute/levelc-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-levelc-lg| image:: /images/icons/attribute/levelc-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-leveld| image:: /images/icons/attribute/leveld-outline.svg
    :class: 'cvc-icon'
-.. |attribute-leveld-sm| image:: /images/icons/attribute/leveld-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-leveld-lg| image:: /images/icons/attribute/leveld-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-levele| image:: /images/icons/attribute/levele-outline.svg
    :class: 'cvc-icon'
-.. |attribute-levele-sm| image:: /images/icons/attribute/levele-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-levele-lg| image:: /images/icons/attribute/levele-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-likelybenign| image:: /images/icons/attribute/likelybenign-outline.svg
    :class: 'cvc-icon'
-.. |attribute-likelybenign-sm| image:: /images/icons/attribute/likelybenign-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-likelybenign-lg| image:: /images/icons/attribute/likelybenign-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-likelyoncogenic| image:: /images/icons/attribute/likelyoncogenic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-likelyoncogenic-sm| image:: /images/icons/attribute/likelyoncogenic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-likelyoncogenic-lg| image:: /images/icons/attribute/likelyoncogenic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-likelypathogenic| image:: /images/icons/attribute/likelypathogenic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-likelypathogenic-sm| image:: /images/icons/attribute/likelypathogenic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-likelypathogenic-lg| image:: /images/icons/attribute/likelypathogenic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-lossoffunction| image:: /images/icons/attribute/lossoffunction-outline.svg
    :class: 'cvc-icon'
-.. |attribute-lossoffunction-sm| image:: /images/icons/attribute/lossoffunction-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-lossoffunction-lg| image:: /images/icons/attribute/lossoffunction-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-na| image:: /images/icons/attribute/na-outline.svg
    :class: 'cvc-icon'
-.. |attribute-na-sm| image:: /images/icons/attribute/na-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-na-lg| image:: /images/icons/attribute/na-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-negative| image:: /images/icons/attribute/negative-outline.svg
    :class: 'cvc-icon'
-.. |attribute-negative-sm| image:: /images/icons/attribute/negative-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-negative-lg| image:: /images/icons/attribute/negative-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-neomorphic| image:: /images/icons/attribute/neomorphic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-neomorphic-sm| image:: /images/icons/attribute/neomorphic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-neomorphic-lg| image:: /images/icons/attribute/neomorphic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-oncogenic| image:: /images/icons/attribute/oncogenic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-oncogenic-sm| image:: /images/icons/attribute/oncogenic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-oncogenic-lg| image:: /images/icons/attribute/oncogenic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-oncogenicity| image:: /images/icons/attribute/oncogenicity-outline.svg
    :class: 'cvc-icon'
-.. |attribute-oncogenicity-sm| image:: /images/icons/attribute/oncogenicity-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-oncogenicity-lg| image:: /images/icons/attribute/oncogenicity-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-oncogenicsignificance| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
    :class: 'cvc-icon'
-.. |attribute-oncogenicsignificance-sm| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-oncogenicsignificance-lg| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-oncogenictype| image:: /images/icons/attribute/oncogenictype-outline.svg
    :class: 'cvc-icon'
-.. |attribute-oncogenictype-sm| image:: /images/icons/attribute/oncogenictype-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-oncogenictype-lg| image:: /images/icons/attribute/oncogenictype-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-pathogenic| image:: /images/icons/attribute/pathogenic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-pathogenic-sm| image:: /images/icons/attribute/pathogenic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-pathogenic-lg| image:: /images/icons/attribute/pathogenic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-pooroutcome| image:: /images/icons/attribute/pooroutcome-outline.svg
    :class: 'cvc-icon'
-.. |attribute-pooroutcome-sm| image:: /images/icons/attribute/pooroutcome-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-pooroutcome-lg| image:: /images/icons/attribute/pooroutcome-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-positive| image:: /images/icons/attribute/positive-outline.svg
    :class: 'cvc-icon'
-.. |attribute-positive-sm| image:: /images/icons/attribute/positive-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-positive-lg| image:: /images/icons/attribute/positive-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-predictive| image:: /images/icons/attribute/predictive-outline.svg
    :class: 'cvc-icon'
-.. |attribute-predictive-sm| image:: /images/icons/attribute/predictive-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-predictive-lg| image:: /images/icons/attribute/predictive-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-predisposing| image:: /images/icons/attribute/predisposing-outline.svg
    :class: 'cvc-icon'
-.. |attribute-predisposing-sm| image:: /images/icons/attribute/predisposing-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-predisposing-lg| image:: /images/icons/attribute/predisposing-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-predisposition| image:: /images/icons/attribute/predisposition-outline.svg
    :class: 'cvc-icon'
-.. |attribute-predisposition-sm| image:: /images/icons/attribute/predisposition-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-predisposition-lg| image:: /images/icons/attribute/predisposition-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-prognostic| image:: /images/icons/attribute/prognostic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-prognostic-sm| image:: /images/icons/attribute/prognostic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-prognostic-lg| image:: /images/icons/attribute/prognostic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-protectiveness| image:: /images/icons/attribute/protectiveness-outline.svg
    :class: 'cvc-icon'
-.. |attribute-protectiveness-sm| image:: /images/icons/attribute/protectiveness-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-protectiveness-lg| image:: /images/icons/attribute/protectiveness-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-raregermline| image:: /images/icons/attribute/raregermline-outline.svg
    :class: 'cvc-icon'
-.. |attribute-raregermline-sm| image:: /images/icons/attribute/raregermline-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-raregermline-lg| image:: /images/icons/attribute/raregermline-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-rating1| image:: /images/icons/attribute/rating1-outline.svg
    :class: 'cvc-icon'
-.. |attribute-rating1-sm| image:: /images/icons/attribute/rating1-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-rating1-lg| image:: /images/icons/attribute/rating1-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-rating2| image:: /images/icons/attribute/rating2-outline.svg
    :class: 'cvc-icon'
-.. |attribute-rating2-sm| image:: /images/icons/attribute/rating2-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-rating2-lg| image:: /images/icons/attribute/rating2-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-rating3| image:: /images/icons/attribute/rating3-outline.svg
    :class: 'cvc-icon'
-.. |attribute-rating3-sm| image:: /images/icons/attribute/rating3-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-rating3-lg| image:: /images/icons/attribute/rating3-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-rating4| image:: /images/icons/attribute/rating4-outline.svg
    :class: 'cvc-icon'
-.. |attribute-rating4-sm| image:: /images/icons/attribute/rating4-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-rating4-lg| image:: /images/icons/attribute/rating4-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-rating5| image:: /images/icons/attribute/rating5-outline.svg
    :class: 'cvc-icon'
-.. |attribute-rating5-sm| image:: /images/icons/attribute/rating5-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-rating5-lg| image:: /images/icons/attribute/rating5-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-reducedsensitivity| image:: /images/icons/attribute/reducedsensitivity-outline.svg
    :class: 'cvc-icon'
-.. |attribute-reducedsensitivity-sm| image:: /images/icons/attribute/reducedsensitivity-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-reducedsensitivity-lg| image:: /images/icons/attribute/reducedsensitivity-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-resistance| image:: /images/icons/attribute/resistance-outline.svg
    :class: 'cvc-icon'
-.. |attribute-resistance-sm| image:: /images/icons/attribute/resistance-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-resistance-lg| image:: /images/icons/attribute/resistance-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-sensitivityresponse| image:: /images/icons/attribute/sensitivityresponse-outline.svg
    :class: 'cvc-icon'
-.. |attribute-sensitivityresponse-sm| image:: /images/icons/attribute/sensitivityresponse-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-sensitivityresponse-lg| image:: /images/icons/attribute/sensitivityresponse-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-sequential| image:: /images/icons/attribute/sequential-outline.svg
    :class: 'cvc-icon'
-.. |attribute-sequential-sm| image:: /images/icons/attribute/sequential-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-sequential-lg| image:: /images/icons/attribute/sequential-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-significanceunknown| image:: /images/icons/attribute/significanceunknown-outline.svg
    :class: 'cvc-icon'
-.. |attribute-significanceunknown-sm| image:: /images/icons/attribute/significanceunknown-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-significanceunknown-lg| image:: /images/icons/attribute/significanceunknown-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-somatic| image:: /images/icons/attribute/somatic-outline.svg
    :class: 'cvc-icon'
-.. |attribute-somatic-sm| image:: /images/icons/attribute/somatic-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-somatic-lg| image:: /images/icons/attribute/somatic-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-substitutes| image:: /images/icons/attribute/substitutes-outline.svg
    :class: 'cvc-icon'
-.. |attribute-substitutes-sm| image:: /images/icons/attribute/substitutes-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-substitutes-lg| image:: /images/icons/attribute/substitutes-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-supports| image:: /images/icons/attribute/supports-outline.svg
    :class: 'cvc-icon'
-.. |attribute-supports-sm| image:: /images/icons/attribute/supports-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-supports-lg| image:: /images/icons/attribute/supports-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-unalteredfunction| image:: /images/icons/attribute/unalteredfunction-outline.svg
    :class: 'cvc-icon'
-.. |attribute-unalteredfunction-sm| image:: /images/icons/attribute/unalteredfunction-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-unalteredfunction-lg| image:: /images/icons/attribute/unalteredfunction-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-uncertainsignificance| image:: /images/icons/attribute/uncertainsignificance-outline.svg
    :class: 'cvc-icon'
-.. |attribute-uncertainsignificance-sm| image:: /images/icons/attribute/uncertainsignificance-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-uncertainsignificance-lg| image:: /images/icons/attribute/uncertainsignificance-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |attribute-unknown| image:: /images/icons/attribute/unknown-outline.svg
    :class: 'cvc-icon'
-.. |attribute-unknown-sm| image:: /images/icons/attribute/unknown-outline.svg
-   :class: 'cvc-icon-sm'
-.. |attribute-unknown-lg| image:: /images/icons/attribute/unknown-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-admin| image:: /images/icons/fullcolor/admin-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-admin-sm| image:: /images/icons/fullcolor/admin-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-admin-lg| image:: /images/icons/fullcolor/admin-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-assertion| image:: /images/icons/fullcolor/assertion-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-assertion-sm| image:: /images/icons/fullcolor/assertion-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-assertion-lg| image:: /images/icons/fullcolor/assertion-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-clinicaltrial| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-clinicaltrial-sm| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-clinicaltrial-lg| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-comment| image:: /images/icons/fullcolor/comment-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-comment-sm| image:: /images/icons/fullcolor/comment-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-comment-lg| image:: /images/icons/fullcolor/comment-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-coordinatesystem| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-coordinatesystem-sm| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-coordinatesystem-lg| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-curator| image:: /images/icons/fullcolor/curator-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-curator-sm| image:: /images/icons/fullcolor/curator-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-curator-lg| image:: /images/icons/fullcolor/curator-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-disease| image:: /images/icons/fullcolor/disease-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-disease-sm| image:: /images/icons/fullcolor/disease-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-disease-lg| image:: /images/icons/fullcolor/disease-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-editor| image:: /images/icons/fullcolor/editor-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-editor-sm| image:: /images/icons/fullcolor/editor-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-editor-lg| image:: /images/icons/fullcolor/editor-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-event| image:: /images/icons/fullcolor/event-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-event-sm| image:: /images/icons/fullcolor/event-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-event-lg| image:: /images/icons/fullcolor/event-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-evidence| image:: /images/icons/fullcolor/evidence-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-evidence-sm| image:: /images/icons/fullcolor/evidence-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-evidence-lg| image:: /images/icons/fullcolor/evidence-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-evidenceitem| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-evidenceitem-sm| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-evidenceitem-lg| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-flag| image:: /images/icons/fullcolor/flag-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-flag-sm| image:: /images/icons/fullcolor/flag-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-flag-lg| image:: /images/icons/fullcolor/flag-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-gene| image:: /images/icons/fullcolor/gene-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-gene-sm| image:: /images/icons/fullcolor/gene-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-gene-lg| image:: /images/icons/fullcolor/gene-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-molecularprofile| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-molecularprofile-sm| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-molecularprofile-lg| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-organization| image:: /images/icons/fullcolor/organization-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-organization-sm| image:: /images/icons/fullcolor/organization-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-organization-lg| image:: /images/icons/fullcolor/organization-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-phenotype| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-phenotype-sm| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-phenotype-lg| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-queue| image:: /images/icons/fullcolor/queue-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-queue-sm| image:: /images/icons/fullcolor/queue-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-queue-lg| image:: /images/icons/fullcolor/queue-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-revision| image:: /images/icons/fullcolor/revision-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-revision-sm| image:: /images/icons/fullcolor/revision-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-revision-lg| image:: /images/icons/fullcolor/revision-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-source| image:: /images/icons/fullcolor/source-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-source-sm| image:: /images/icons/fullcolor/source-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-source-lg| image:: /images/icons/fullcolor/source-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-therapy| image:: /images/icons/fullcolor/therapy-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-therapy-sm| image:: /images/icons/fullcolor/therapy-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-therapy-lg| image:: /images/icons/fullcolor/therapy-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-user| image:: /images/icons/fullcolor/user-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-user-sm| image:: /images/icons/fullcolor/user-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-user-lg| image:: /images/icons/fullcolor/user-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-variant| image:: /images/icons/fullcolor/variant.svg
    :class: 'cvc-icon'
-.. |fullcolor-variant-sm| image:: /images/icons/fullcolor/variant.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-variant-lg| image:: /images/icons/fullcolor/variant.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-variantgroup| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-variantgroup-sm| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-variantgroup-lg| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |fullcolor-varianttype| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
    :class: 'cvc-icon'
-.. |fullcolor-varianttype-sm| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
-   :class: 'cvc-icon-sm'
-.. |fullcolor-varianttype-lg| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-admin| image:: /images/icons/outline/admin-outline.svg
    :class: 'cvc-icon'
-.. |outline-admin-sm| image:: /images/icons/outline/admin-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-admin-lg| image:: /images/icons/outline/admin-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-assertion| image:: /images/icons/outline/assertion-outline.svg
    :class: 'cvc-icon'
-.. |outline-assertion-sm| image:: /images/icons/outline/assertion-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-assertion-lg| image:: /images/icons/outline/assertion-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-clinicaltrial| image:: /images/icons/outline/clinicaltrial-outline.svg
    :class: 'cvc-icon'
-.. |outline-clinicaltrial-sm| image:: /images/icons/outline/clinicaltrial-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-clinicaltrial-lg| image:: /images/icons/outline/clinicaltrial-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-comment| image:: /images/icons/outline/comment-outline.svg
    :class: 'cvc-icon'
-.. |outline-comment-sm| image:: /images/icons/outline/comment-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-comment-lg| image:: /images/icons/outline/comment-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-coordinatesystem| image:: /images/icons/outline/coordinatesystem-outline.svg
    :class: 'cvc-icon'
-.. |outline-coordinatesystem-sm| image:: /images/icons/outline/coordinatesystem-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-coordinatesystem-lg| image:: /images/icons/outline/coordinatesystem-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-curator| image:: /images/icons/outline/curator-outline.svg
    :class: 'cvc-icon'
-.. |outline-curator-sm| image:: /images/icons/outline/curator-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-curator-lg| image:: /images/icons/outline/curator-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-disease| image:: /images/icons/outline/disease-outline.svg
    :class: 'cvc-icon'
-.. |outline-disease-sm| image:: /images/icons/outline/disease-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-disease-lg| image:: /images/icons/outline/disease-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-editor| image:: /images/icons/outline/editor-outline.svg
    :class: 'cvc-icon'
-.. |outline-editor-sm| image:: /images/icons/outline/editor-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-editor-lg| image:: /images/icons/outline/editor-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-event| image:: /images/icons/outline/event-outline.svg
    :class: 'cvc-icon'
-.. |outline-event-sm| image:: /images/icons/outline/event-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-event-lg| image:: /images/icons/outline/event-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-evidence| image:: /images/icons/outline/evidence-outline.svg
    :class: 'cvc-icon'
-.. |outline-evidence-sm| image:: /images/icons/outline/evidence-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-evidence-lg| image:: /images/icons/outline/evidence-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-evidenceitem| image:: /images/icons/outline/evidenceitem-outline.svg
    :class: 'cvc-icon'
-.. |outline-evidenceitem-sm| image:: /images/icons/outline/evidenceitem-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-evidenceitem-lg| image:: /images/icons/outline/evidenceitem-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-flag| image:: /images/icons/outline/flag-outline.svg
    :class: 'cvc-icon'
-.. |outline-flag-sm| image:: /images/icons/outline/flag-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-flag-lg| image:: /images/icons/outline/flag-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-gene| image:: /images/icons/outline/gene-outline.svg
    :class: 'cvc-icon'
-.. |outline-gene-sm| image:: /images/icons/outline/gene-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-gene-lg| image:: /images/icons/outline/gene-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-molecularprofile| image:: /images/icons/outline/molecularprofile-outline.svg
    :class: 'cvc-icon'
-.. |outline-molecularprofile-sm| image:: /images/icons/outline/molecularprofile-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-molecularprofile-lg| image:: /images/icons/outline/molecularprofile-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-organization| image:: /images/icons/outline/organization-outline.svg
    :class: 'cvc-icon'
-.. |outline-organization-sm| image:: /images/icons/outline/organization-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-organization-lg| image:: /images/icons/outline/organization-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-phenotype| image:: /images/icons/outline/phenotype-outline.svg
    :class: 'cvc-icon'
-.. |outline-phenotype-sm| image:: /images/icons/outline/phenotype-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-phenotype-lg| image:: /images/icons/outline/phenotype-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-queue| image:: /images/icons/outline/queue-outline.svg
    :class: 'cvc-icon'
-.. |outline-queue-sm| image:: /images/icons/outline/queue-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-queue-lg| image:: /images/icons/outline/queue-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-revision| image:: /images/icons/outline/revision-outline.svg
    :class: 'cvc-icon'
-.. |outline-revision-sm| image:: /images/icons/outline/revision-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-revision-lg| image:: /images/icons/outline/revision-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-source| image:: /images/icons/outline/source-outline.svg
    :class: 'cvc-icon'
-.. |outline-source-sm| image:: /images/icons/outline/source-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-source-lg| image:: /images/icons/outline/source-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-therapy| image:: /images/icons/outline/therapy-outline.svg
    :class: 'cvc-icon'
-.. |outline-therapy-sm| image:: /images/icons/outline/therapy-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-therapy-lg| image:: /images/icons/outline/therapy-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-user| image:: /images/icons/outline/user-outline.svg
    :class: 'cvc-icon'
-.. |outline-user-sm| image:: /images/icons/outline/user-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-user-lg| image:: /images/icons/outline/user-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-variant| image:: /images/icons/outline/variant-outline.svg
    :class: 'cvc-icon'
-.. |outline-variant-sm| image:: /images/icons/outline/variant-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-variant-lg| image:: /images/icons/outline/variant-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-variantgroup| image:: /images/icons/outline/variantgroup-outline.svg
    :class: 'cvc-icon'
-.. |outline-variantgroup-sm| image:: /images/icons/outline/variantgroup-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-variantgroup-lg| image:: /images/icons/outline/variantgroup-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |outline-varianttype| image:: /images/icons/outline/varianttype-outline.svg
    :class: 'cvc-icon'
-.. |outline-varianttype-sm| image:: /images/icons/outline/varianttype-outline.svg
-   :class: 'cvc-icon-sm'
-.. |outline-varianttype-lg| image:: /images/icons/outline/varianttype-outline.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-admin| image:: /images/icons/twotone/admin-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-admin-sm| image:: /images/icons/twotone/admin-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-admin-lg| image:: /images/icons/twotone/admin-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-assertion| image:: /images/icons/twotone/assertion-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-assertion-sm| image:: /images/icons/twotone/assertion-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-assertion-lg| image:: /images/icons/twotone/assertion-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-clinicaltrial| image:: /images/icons/twotone/clinicaltrial-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-clinicaltrial-sm| image:: /images/icons/twotone/clinicaltrial-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-clinicaltrial-lg| image:: /images/icons/twotone/clinicaltrial-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-comment| image:: /images/icons/twotone/comment-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-comment-sm| image:: /images/icons/twotone/comment-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-comment-lg| image:: /images/icons/twotone/comment-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-coordinatesystem| image:: /images/icons/twotone/coordinatesystem-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-coordinatesystem-sm| image:: /images/icons/twotone/coordinatesystem-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-coordinatesystem-lg| image:: /images/icons/twotone/coordinatesystem-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-curator| image:: /images/icons/twotone/curator-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-curator-sm| image:: /images/icons/twotone/curator-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-curator-lg| image:: /images/icons/twotone/curator-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-disease| image:: /images/icons/twotone/disease-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-disease-sm| image:: /images/icons/twotone/disease-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-disease-lg| image:: /images/icons/twotone/disease-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-editor| image:: /images/icons/twotone/editor-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-editor-sm| image:: /images/icons/twotone/editor-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-editor-lg| image:: /images/icons/twotone/editor-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-event| image:: /images/icons/twotone/event-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-event-sm| image:: /images/icons/twotone/event-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-event-lg| image:: /images/icons/twotone/event-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-evidence| image:: /images/icons/twotone/evidence-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-evidence-sm| image:: /images/icons/twotone/evidence-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-evidence-lg| image:: /images/icons/twotone/evidence-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-evidenceitem| image:: /images/icons/twotone/evidenceitem-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-evidenceitem-sm| image:: /images/icons/twotone/evidenceitem-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-evidenceitem-lg| image:: /images/icons/twotone/evidenceitem-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-flag| image:: /images/icons/twotone/flag-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-flag-sm| image:: /images/icons/twotone/flag-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-flag-lg| image:: /images/icons/twotone/flag-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-gene| image:: /images/icons/twotone/gene-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-gene-sm| image:: /images/icons/twotone/gene-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-gene-lg| image:: /images/icons/twotone/gene-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-molecularprofile| image:: /images/icons/twotone/molecularprofile-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-molecularprofile-sm| image:: /images/icons/twotone/molecularprofile-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-molecularprofile-lg| image:: /images/icons/twotone/molecularprofile-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-organization| image:: /images/icons/twotone/organization-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-organization-sm| image:: /images/icons/twotone/organization-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-organization-lg| image:: /images/icons/twotone/organization-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-phenotype| image:: /images/icons/twotone/phenotype-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-phenotype-sm| image:: /images/icons/twotone/phenotype-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-phenotype-lg| image:: /images/icons/twotone/phenotype-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-queue| image:: /images/icons/twotone/queue-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-queue-sm| image:: /images/icons/twotone/queue-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-queue-lg| image:: /images/icons/twotone/queue-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-revision| image:: /images/icons/twotone/revision-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-revision-sm| image:: /images/icons/twotone/revision-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-revision-lg| image:: /images/icons/twotone/revision-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-source| image:: /images/icons/twotone/source-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-source-sm| image:: /images/icons/twotone/source-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-source-lg| image:: /images/icons/twotone/source-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-therapy| image:: /images/icons/twotone/therapy-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-therapy-sm| image:: /images/icons/twotone/therapy-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-therapy-lg| image:: /images/icons/twotone/therapy-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-user| image:: /images/icons/twotone/user-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-user-sm| image:: /images/icons/twotone/user-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-user-lg| image:: /images/icons/twotone/user-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-variant| image:: /images/icons/twotone/variant-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-variant-sm| image:: /images/icons/twotone/variant-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-variant-lg| image:: /images/icons/twotone/variant-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-variantgroup| image:: /images/icons/twotone/variantgroup-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-variantgroup-sm| image:: /images/icons/twotone/variantgroup-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-variantgroup-lg| image:: /images/icons/twotone/variantgroup-twotone.svg
-   :class: 'cvc-icon-lg'
 
 
 .. |twotone-varianttype| image:: /images/icons/twotone/varianttype-twotone.svg
    :class: 'cvc-icon'
-.. |twotone-varianttype-sm| image:: /images/icons/twotone/varianttype-twotone.svg
-   :class: 'cvc-icon-sm'
-.. |twotone-varianttype-lg| image:: /images/icons/twotone/varianttype-twotone.svg
-   :class: 'cvc-icon-lg'
diff --git a/client/src/app/generated/civic.docs-aliases.rst b/client/src/app/generated/civic.docs-aliases.rst
new file mode 100644
index 000000000..eb2594792
--- /dev/null
+++ b/client/src/app/generated/civic.docs-aliases.rst
@@ -0,0 +1,499 @@
+..
+   GENERATED BY CiVIC CLIENT DEV SCRIPT, DO NOT EDIT
+   (unless you know what you are doing)
+   Produced by `generate-icon-rst` script in civic-v2/client/scripts
+
+.. |attribute-adverseresponse| image:: /images/icons/attribute/adverseresponse-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-benign| image:: /images/icons/attribute/benign-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-betteroutcome| image:: /images/icons/attribute/betteroutcome-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-combination| image:: /images/icons/attribute/combination-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-combined| image:: /images/icons/attribute/combined-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-commongermline| image:: /images/icons/attribute/commongermline-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-diagnostic| image:: /images/icons/attribute/diagnostic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-doesnotsupport| image:: /images/icons/attribute/doesnotsupport-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-dominantnegative| image:: /images/icons/attribute/dominantnegative-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-functional| image:: /images/icons/attribute/functional-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-gainoffunction| image:: /images/icons/attribute/gainoffunction-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-levela| image:: /images/icons/attribute/levela-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-levelb| image:: /images/icons/attribute/levelb-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-levelc| image:: /images/icons/attribute/levelc-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-leveld| image:: /images/icons/attribute/leveld-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-levele| image:: /images/icons/attribute/levele-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-likelybenign| image:: /images/icons/attribute/likelybenign-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-likelyoncogenic| image:: /images/icons/attribute/likelyoncogenic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-likelypathogenic| image:: /images/icons/attribute/likelypathogenic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-lossoffunction| image:: /images/icons/attribute/lossoffunction-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-na| image:: /images/icons/attribute/na-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-negative| image:: /images/icons/attribute/negative-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-neomorphic| image:: /images/icons/attribute/neomorphic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-oncogenic| image:: /images/icons/attribute/oncogenic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-oncogenicity| image:: /images/icons/attribute/oncogenicity-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-oncogenicsignificance| image:: /images/icons/attribute/oncogenicsignificance-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-oncogenictype| image:: /images/icons/attribute/oncogenictype-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-pathogenic| image:: /images/icons/attribute/pathogenic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-pooroutcome| image:: /images/icons/attribute/pooroutcome-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-positive| image:: /images/icons/attribute/positive-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-predictive| image:: /images/icons/attribute/predictive-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-predisposing| image:: /images/icons/attribute/predisposing-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-predisposition| image:: /images/icons/attribute/predisposition-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-prognostic| image:: /images/icons/attribute/prognostic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-protectiveness| image:: /images/icons/attribute/protectiveness-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-raregermline| image:: /images/icons/attribute/raregermline-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-rating1| image:: /images/icons/attribute/rating1-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-rating2| image:: /images/icons/attribute/rating2-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-rating3| image:: /images/icons/attribute/rating3-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-rating4| image:: /images/icons/attribute/rating4-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-rating5| image:: /images/icons/attribute/rating5-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-reducedsensitivity| image:: /images/icons/attribute/reducedsensitivity-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-resistance| image:: /images/icons/attribute/resistance-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-sensitivityresponse| image:: /images/icons/attribute/sensitivityresponse-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-sequential| image:: /images/icons/attribute/sequential-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-significanceunknown| image:: /images/icons/attribute/significanceunknown-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-somatic| image:: /images/icons/attribute/somatic-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-substitutes| image:: /images/icons/attribute/substitutes-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-supports| image:: /images/icons/attribute/supports-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-unalteredfunction| image:: /images/icons/attribute/unalteredfunction-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-uncertainsignificance| image:: /images/icons/attribute/uncertainsignificance-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |attribute-unknown| image:: /images/icons/attribute/unknown-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-admin| image:: /images/icons/fullcolor/admin-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-assertion| image:: /images/icons/fullcolor/assertion-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-clinicaltrial| image:: /images/icons/fullcolor/clinicaltrial-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-comment| image:: /images/icons/fullcolor/comment-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-coordinatesystem| image:: /images/icons/fullcolor/coordinatesystem-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-curator| image:: /images/icons/fullcolor/curator-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-disease| image:: /images/icons/fullcolor/disease-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-editor| image:: /images/icons/fullcolor/editor-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-event| image:: /images/icons/fullcolor/event-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-evidence| image:: /images/icons/fullcolor/evidence-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-evidenceitem| image:: /images/icons/fullcolor/evidenceitem-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-flag| image:: /images/icons/fullcolor/flag-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-gene| image:: /images/icons/fullcolor/gene-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-molecularprofile| image:: /images/icons/fullcolor/molecularprofile-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-organization| image:: /images/icons/fullcolor/organization-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-phenotype| image:: /images/icons/fullcolor/phenotype-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-queue| image:: /images/icons/fullcolor/queue-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-revision| image:: /images/icons/fullcolor/revision-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-source| image:: /images/icons/fullcolor/source-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-therapy| image:: /images/icons/fullcolor/therapy-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-user| image:: /images/icons/fullcolor/user-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-variant| image:: /images/icons/fullcolor/variant.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-variantgroup| image:: /images/icons/fullcolor/variantgroup-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |fullcolor-varianttype| image:: /images/icons/fullcolor/varianttype-fullcolor.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-admin| image:: /images/icons/outline/admin-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-assertion| image:: /images/icons/outline/assertion-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-clinicaltrial| image:: /images/icons/outline/clinicaltrial-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-comment| image:: /images/icons/outline/comment-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-coordinatesystem| image:: /images/icons/outline/coordinatesystem-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-curator| image:: /images/icons/outline/curator-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-disease| image:: /images/icons/outline/disease-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-editor| image:: /images/icons/outline/editor-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-event| image:: /images/icons/outline/event-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-evidence| image:: /images/icons/outline/evidence-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-evidenceitem| image:: /images/icons/outline/evidenceitem-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-flag| image:: /images/icons/outline/flag-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-gene| image:: /images/icons/outline/gene-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-molecularprofile| image:: /images/icons/outline/molecularprofile-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-organization| image:: /images/icons/outline/organization-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-phenotype| image:: /images/icons/outline/phenotype-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-queue| image:: /images/icons/outline/queue-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-revision| image:: /images/icons/outline/revision-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-source| image:: /images/icons/outline/source-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-therapy| image:: /images/icons/outline/therapy-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-user| image:: /images/icons/outline/user-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-variant| image:: /images/icons/outline/variant-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-variantgroup| image:: /images/icons/outline/variantgroup-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |outline-varianttype| image:: /images/icons/outline/varianttype-outline.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-admin| image:: /images/icons/twotone/admin-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-assertion| image:: /images/icons/twotone/assertion-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-clinicaltrial| image:: /images/icons/twotone/clinicaltrial-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-comment| image:: /images/icons/twotone/comment-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-coordinatesystem| image:: /images/icons/twotone/coordinatesystem-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-curator| image:: /images/icons/twotone/curator-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-disease| image:: /images/icons/twotone/disease-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-editor| image:: /images/icons/twotone/editor-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-event| image:: /images/icons/twotone/event-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-evidence| image:: /images/icons/twotone/evidence-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-evidenceitem| image:: /images/icons/twotone/evidenceitem-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-flag| image:: /images/icons/twotone/flag-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-gene| image:: /images/icons/twotone/gene-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-molecularprofile| image:: /images/icons/twotone/molecularprofile-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-organization| image:: /images/icons/twotone/organization-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-phenotype| image:: /images/icons/twotone/phenotype-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-queue| image:: /images/icons/twotone/queue-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-revision| image:: /images/icons/twotone/revision-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-source| image:: /images/icons/twotone/source-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-therapy| image:: /images/icons/twotone/therapy-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-user| image:: /images/icons/twotone/user-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-variant| image:: /images/icons/twotone/variant-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-variantgroup| image:: /images/icons/twotone/variantgroup-twotone.svg
+   :class: 'cvc-icon'
+
+
+.. |twotone-varianttype| image:: /images/icons/twotone/varianttype-twotone.svg
+   :class: 'cvc-icon'

From 5715ad1685d3a129e2964193c5bac2b0026717de Mon Sep 17 00:00:00 2001
From: Joshua McMichael <jmcmicha@wustl.edu>
Date: Thu, 24 Aug 2023 10:22:07 -0500
Subject: [PATCH 07/14] added generate-docs-rst command to generate icon data &
 rst serially

---
 client/package.json | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/client/package.json b/client/package.json
index 3596f2049..9b143be0b 100644
--- a/client/package.json
+++ b/client/package.json
@@ -15,7 +15,8 @@
     "generate-apollo": "graphql-codegen",
     "generate-apollo:start": "graphql-codegen --watch",
     "generate-icon-data": "scripts/generate-icon-data.js",
-    "generate-icon-rst": "scripts/generate-icon-rst.js"
+    "generate-icon-rst": "scripts/generate-icon-rst.js",
+    "generate-docs-rst": "yarn run generate-icon-data && yarn run generate-icon-rst"
   },
   "private": true,
   "resolutions": {

From 722504cb22562a9cc4d3db3c1a6cd8cba91d5ffe Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Fri, 25 Aug 2023 10:42:49 -0500
Subject: [PATCH 08/14] variants no longer join to eids. closes #871

---
 server/app/admin/variants_admin.rb | 1 -
 1 file changed, 1 deletion(-)

diff --git a/server/app/admin/variants_admin.rb b/server/app/admin/variants_admin.rb
index 1dc177758..8d0979c5b 100644
--- a/server/app/admin/variants_admin.rb
+++ b/server/app/admin/variants_admin.rb
@@ -14,7 +14,6 @@
   end
 
   scope :all
-  scope :with_evidence, -> { Variant.joins(:evidence_items).distinct }, default: true
   scope :flagged, -> { Variant.where(flagged: true) }
 
   # Customize the table columns shown on the index view.

From 3d909f4b79e4478fd996619fbf8de56a1a151736 Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Fri, 25 Aug 2023 10:47:11 -0500
Subject: [PATCH 09/14] add search (and aliases) to disease admin. closes #872

---
 server/app/admin/diseases_admin.rb | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/server/app/admin/diseases_admin.rb b/server/app/admin/diseases_admin.rb
index 6d483d916..d54546a56 100644
--- a/server/app/admin/diseases_admin.rb
+++ b/server/app/admin/diseases_admin.rb
@@ -1,8 +1,16 @@
 Trestle.resource(:diseases) do
+  collection do
+    Disease.eager_load(:disease_aliases)
+  end
+
   menu do
     item :diseases, icon: "fa fa-disease"
   end
 
+  search do |q|
+    q ? collection.where("diseases.doid ILIKE ? OR diseases.name ILIKE ? OR disease_aliases.name ILIKE ?", "%#{q}%", "%#{q}%", "%#{q}%") : collection
+  end
+
   scope :all, default: true
   scope :without_doid, -> { Disease.where(doid: nil) }
 
@@ -11,6 +19,9 @@
     column :id
     column :doid
     column :name
+    column :aliases do |disease|
+      disease.disease_aliases.map(&:name).join(", ")
+    end
   end
 
   # Customize the form fields shown on the new/edit views.

From e6ebd79446daa905e1476629a65ae50064e5d404 Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Fri, 25 Aug 2023 10:48:38 -0500
Subject: [PATCH 10/14] update rails for security patches

---
 server/Gemfile.lock | 129 ++++++++++++++++++++++----------------------
 1 file changed, 65 insertions(+), 64 deletions(-)

diff --git a/server/Gemfile.lock b/server/Gemfile.lock
index cf84c4c90..ac990331d 100644
--- a/server/Gemfile.lock
+++ b/server/Gemfile.lock
@@ -1,40 +1,40 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    actioncable (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actioncable (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       nio4r (~> 2.0)
       websocket-driver (>= 0.6.1)
-    actionmailbox (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      activejob (= 6.1.7.4)
-      activerecord (= 6.1.7.4)
-      activestorage (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actionmailbox (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      activejob (= 6.1.7.6)
+      activerecord (= 6.1.7.6)
+      activestorage (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       mail (>= 2.7.1)
-    actionmailer (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      actionview (= 6.1.7.4)
-      activejob (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actionmailer (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      actionview (= 6.1.7.6)
+      activejob (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       mail (~> 2.5, >= 2.5.4)
       rails-dom-testing (~> 2.0)
-    actionpack (6.1.7.4)
-      actionview (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actionpack (6.1.7.6)
+      actionview (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       rack (~> 2.0, >= 2.0.9)
       rack-test (>= 0.6.3)
       rails-dom-testing (~> 2.0)
       rails-html-sanitizer (~> 1.0, >= 1.2.0)
-    actiontext (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      activerecord (= 6.1.7.4)
-      activestorage (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actiontext (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      activerecord (= 6.1.7.6)
+      activestorage (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       nokogiri (>= 1.8.5)
-    actionview (6.1.7.4)
-      activesupport (= 6.1.7.4)
+    actionview (6.1.7.6)
+      activesupport (= 6.1.7.6)
       builder (~> 3.1)
       erubi (~> 1.4)
       rails-dom-testing (~> 2.0)
@@ -44,22 +44,22 @@ GEM
       activemodel (>= 5.2.0)
       activestorage (>= 5.2.0)
       activesupport (>= 5.2.0)
-    activejob (6.1.7.4)
-      activesupport (= 6.1.7.4)
+    activejob (6.1.7.6)
+      activesupport (= 6.1.7.6)
       globalid (>= 0.3.6)
-    activemodel (6.1.7.4)
-      activesupport (= 6.1.7.4)
-    activerecord (6.1.7.4)
-      activemodel (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
-    activestorage (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      activejob (= 6.1.7.4)
-      activerecord (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    activemodel (6.1.7.6)
+      activesupport (= 6.1.7.6)
+    activerecord (6.1.7.6)
+      activemodel (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
+    activestorage (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      activejob (= 6.1.7.6)
+      activerecord (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       marcel (~> 1.0)
       mini_mime (>= 1.1.0)
-    activesupport (6.1.7.4)
+    activesupport (6.1.7.6)
       concurrent-ruby (~> 1.0, >= 1.0.2)
       i18n (>= 1.6, < 2)
       minitest (>= 5.1)
@@ -223,13 +223,13 @@ GEM
     matrix (0.4.2)
     method_source (1.0.0)
     mini_magick (4.12.0)
-    mini_mime (1.1.2)
-    minitest (5.18.1)
+    mini_mime (1.1.5)
+    minitest (5.19.0)
     msgpack (1.7.0)
     multi_json (1.15.0)
     multi_xml (0.6.0)
     multipart-post (2.3.0)
-    net-imap (0.3.6)
+    net-imap (0.3.7)
       date
       net-protocol
     net-pop (0.1.2)
@@ -242,11 +242,11 @@ GEM
       net-protocol
     net-ssh (7.1.0)
     nio4r (2.5.9)
-    nokogiri (1.15.3-arm64-darwin)
+    nokogiri (1.15.4-arm64-darwin)
       racc (~> 1.4)
-    nokogiri (1.15.3-x86_64-darwin)
+    nokogiri (1.15.4-x86_64-darwin)
       racc (~> 1.4)
-    nokogiri (1.15.3-x86_64-linux)
+    nokogiri (1.15.4-x86_64-linux)
       racc (~> 1.4)
     oauth2 (1.4.11)
       faraday (>= 0.17.3, < 3.0)
@@ -292,7 +292,7 @@ GEM
       nio4r (~> 2.0)
     raabro (1.4.0)
     racc (1.7.1)
-    rack (2.2.7)
+    rack (2.2.8)
     rack-cors (1.1.1)
       rack (>= 2.0.0)
     rack-mini-profiler (2.3.4)
@@ -303,30 +303,31 @@ GEM
       rack
     rack-test (2.1.0)
       rack (>= 1.3)
-    rails (6.1.7.4)
-      actioncable (= 6.1.7.4)
-      actionmailbox (= 6.1.7.4)
-      actionmailer (= 6.1.7.4)
-      actionpack (= 6.1.7.4)
-      actiontext (= 6.1.7.4)
-      actionview (= 6.1.7.4)
-      activejob (= 6.1.7.4)
-      activemodel (= 6.1.7.4)
-      activerecord (= 6.1.7.4)
-      activestorage (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    rails (6.1.7.6)
+      actioncable (= 6.1.7.6)
+      actionmailbox (= 6.1.7.6)
+      actionmailer (= 6.1.7.6)
+      actionpack (= 6.1.7.6)
+      actiontext (= 6.1.7.6)
+      actionview (= 6.1.7.6)
+      activejob (= 6.1.7.6)
+      activemodel (= 6.1.7.6)
+      activerecord (= 6.1.7.6)
+      activestorage (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       bundler (>= 1.15.0)
-      railties (= 6.1.7.4)
+      railties (= 6.1.7.6)
       sprockets-rails (>= 2.0.0)
-    rails-dom-testing (2.0.3)
-      activesupport (>= 4.2.0)
+    rails-dom-testing (2.2.0)
+      activesupport (>= 5.0.0)
+      minitest
       nokogiri (>= 1.6)
     rails-html-sanitizer (1.6.0)
       loofah (~> 2.21)
       nokogiri (~> 1.14)
-    railties (6.1.7.4)
-      actionpack (= 6.1.7.4)
-      activesupport (= 6.1.7.4)
+    railties (6.1.7.6)
+      actionpack (= 6.1.7.6)
+      activesupport (= 6.1.7.6)
       method_source
       rake (>= 12.2)
       thor (~> 1.0)
@@ -449,13 +450,13 @@ GEM
       rack-proxy (>= 0.6.1)
       railties (>= 5.2)
       semantic_range (>= 2.3.0)
-    websocket-driver (0.7.5)
+    websocket-driver (0.7.6)
       websocket-extensions (>= 0.1.0)
     websocket-extensions (0.1.5)
     xpath (3.2.0)
       nokogiri (~> 1.8)
     yard (0.9.33)
-    zeitwerk (2.6.8)
+    zeitwerk (2.6.11)
 
 PLATFORMS
   arm64-darwin-21

From f59ab621f6c439e3ebe23b64e30aba159d7df7f4 Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Mon, 28 Aug 2023 10:56:59 -0500
Subject: [PATCH 11/14] add api usage examples

---
 examples/fetch_acmg_code.R     | 25 +++++++++++
 examples/fetch_all_variants.py | 79 ++++++++++++++++++++++++++++++++++
 2 files changed, 104 insertions(+)
 create mode 100644 examples/fetch_acmg_code.R
 create mode 100644 examples/fetch_all_variants.py

diff --git a/examples/fetch_acmg_code.R b/examples/fetch_acmg_code.R
new file mode 100644
index 000000000..0a6db530f
--- /dev/null
+++ b/examples/fetch_acmg_code.R
@@ -0,0 +1,25 @@
+library(ghql)
+library(jsonlite)
+library(dplyr)
+
+link <- 'https://civicdb.org/api/graphql'
+
+conn <- GraphqlClient$new(url = link)
+
+query <- '
+  query acmgCode($id: Int!) {
+    acmgCode(id: $id) {
+      code
+      description
+      id
+      name
+      tooltip
+    }
+  }
+'
+
+q <- Query$new()$query('codes', query)
+variables <- list(id = 9)
+result <- conn$exec(q$codes, variables = variables) %>% 
+  fromJSON(flatten = F)
+result
diff --git a/examples/fetch_all_variants.py b/examples/fetch_all_variants.py
new file mode 100644
index 000000000..2aaa93341
--- /dev/null
+++ b/examples/fetch_all_variants.py
@@ -0,0 +1,79 @@
+import requests
+import pprint
+
+
+#helper method to run the API query
+def run_query(query, variables):
+    request = requests.post('https://civicdb.org/api/graphql', json={'query': query, 'variables': variables})
+    if request.status_code == 200:
+        return request.json()
+    else:
+        raise Exception("Query failed to run by returning code of {}. {}".format(request.status_code, query))
+
+# The GraphQL query you want to run
+query = """
+query variants($after: String) {
+  variants(after: $after) {
+    totalCount
+    pageInfo {
+      hasNextPage
+      endCursor
+    }
+    nodes {
+      id
+      name
+      variantAliases
+      variantBases
+      referenceBases
+      referenceBuild
+      clinvarIds
+      alleleRegistryId
+      ensemblVersion
+      gene {
+        name
+        id
+        entrezId
+      }
+      hgvsDescriptions
+      primaryCoordinates {
+        start
+        stop
+        chromosome
+        representativeTranscript
+      }
+      secondaryCoordinates{
+        start
+        stop
+        chromosome
+        representativeTranscript
+      }
+      variantTypes {
+        id
+        soid
+        description
+      }
+    }
+  }
+}
+"""
+
+
+hasNextPage = True
+previousPageEnd = None
+variants = []
+
+#loop through all the pages
+while hasNextPage:
+    variables = {
+      "after": previousPageEnd
+    }
+    resp = run_query(query, variables)
+    data = resp['data']['variants']
+    variants = variants + data['nodes']
+    hasNextPage = data['pageInfo']['hasNextPage']
+    previousPageEnd = data['pageInfo']['endCursor']
+
+
+pp = pprint.PrettyPrinter(indent=2)
+pp.pprint(variants)
+

From e44e8b2663c6493885834c6592a0e8a83a09ef8e Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Mon, 28 Aug 2023 15:46:57 -0500
Subject: [PATCH 12/14] mp edit form does not allow editing of mp aliases when
 it is a simple mp

---
 .../molecular-profile-revise.queries.gql      |  1 +
 .../molecular-profile-revise.form.html        |  6 ++--
 .../molecular-profile-revise.form.ts          | 31 ++++++++++++++++---
 .../molecular-profile-revise.query.gql        |  1 +
 .../types/tag-input/tag-input.type.html       |  9 +++---
 .../forms2/types/tag-input/tag-input.type.ts  |  4 +--
 .../src/app/generated/civic.apollo-helpers.ts |  3 +-
 client/src/app/generated/civic.apollo.ts      |  6 ++--
 client/src/app/generated/server.model.graphql |  1 +
 client/src/app/generated/server.schema.json   | 16 ++++++++++
 .../types/entities/molecular_profile_type.rb  |  7 +++++
 server/app/models/variant.rb                  | 11 +++++++
 12 files changed, 79 insertions(+), 17 deletions(-)

diff --git a/client/src/app/forms/molecular-profile-revise/molecular-profile-revise.queries.gql b/client/src/app/forms/molecular-profile-revise/molecular-profile-revise.queries.gql
index 480868ea5..fc8e55f30 100644
--- a/client/src/app/forms/molecular-profile-revise/molecular-profile-revise.queries.gql
+++ b/client/src/app/forms/molecular-profile-revise/molecular-profile-revise.queries.gql
@@ -14,6 +14,7 @@ fragment RevisableMolecularProfileFields on MolecularProfile {
     citationId
   }
   molecularProfileAliases
+  isComplex
 }
 
 mutation SuggestMolecularProfileRevision(
diff --git a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.html b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.html
index 1bea470a7..9c6b51cbe 100644
--- a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.html
+++ b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.html
@@ -12,7 +12,7 @@
       [form]="form"
       [fields]="fields"
       [model]="model"
-      [options]="{}"
+      [options]="options"
       (modelChange)="model = $event">
     </formly-form>
   </form>
@@ -29,5 +29,5 @@ <h4>Form</h4>
 touched: {{ form.touched }}
     </pre>
   </nz-col>
-</nz-row> 
- -->
\ No newline at end of file
+</nz-row>
+ -->
diff --git a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.ts b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.ts
index b19216c9a..67ffe7617 100644
--- a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.ts
+++ b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.form.ts
@@ -4,12 +4,11 @@ import {
   ChangeDetectorRef,
   Component,
   Input,
-  OnInit,
-} from '@angular/core'
+  OnInit, } from '@angular/core'
 import { UntypedFormGroup } from '@angular/forms'
 import { MolecularProfileRevisableFieldsGQL, SuggestMolecularProfileRevisionGQL, SuggestMolecularProfileRevisionMutation, SuggestMolecularProfileRevisionMutationVariables } from '@app/generated/civic.apollo'
 import { UntilDestroy, untilDestroyed } from '@ngneat/until-destroy'
-import { FormlyFieldConfig } from '@ngx-formly/core'
+import { FormlyFieldConfig, FormlyFormOptions } from '@ngx-formly/core'
 import { MutationState, MutatorWithState } from '@app/core/utilities/mutation-state-wrapper'
 import { NetworkErrorsService } from '@app/core/services/network-errors.service'
 import { MolecularProfileReviseModel } from '@app/forms2/models/molecular-profile-revise.model'
@@ -27,6 +26,7 @@ export class CvcMolecularProfileReviseForm implements OnInit, AfterViewInit {
   model?: MolecularProfileReviseModel
   form: UntypedFormGroup
   fields: FormlyFieldConfig[]
+  options: FormlyFormOptions
 
   reviseEvidenceMutator: MutatorWithState<
     SuggestMolecularProfileRevisionGQL,
@@ -40,10 +40,28 @@ export class CvcMolecularProfileReviseForm implements OnInit, AfterViewInit {
   constructor(
     private revisableFieldsGQL: MolecularProfileRevisableFieldsGQL,
     private submitRevisionsGQL: SuggestMolecularProfileRevisionGQL,
-    private networkErrorService: NetworkErrorsService,
-    private cdr: ChangeDetectorRef
+    private cdr: ChangeDetectorRef,
+    networkErrorService: NetworkErrorsService
   ) {
     this.form = new UntypedFormGroup({})
+    this.options = { formState: { isSimpleMp: undefined } }
+
+    const aliasField = molecularProfileReviseFields[0]?.fieldGroup?.find(f => f.key == 'fields')?.fieldGroup?.find(f => f.key == "aliases")
+    if (aliasField) {
+      const originalDescription = aliasField.props?.description
+      aliasField.expressions = {
+        'props.disabled': (field: FormlyFieldConfig) => {
+          return field.options?.formState.isSimpleMp
+        },
+        'props.description': (field: FormlyFieldConfig) => {
+          if(field.options?.formState.isSimpleMp) {
+            return 'Simple Molecular Profiles inherit their Aliases from the corresponding Variant.'
+          } else {
+            return originalDescription
+          }
+        },
+      }
+    }
     this.fields = molecularProfileReviseFields
     this.reviseEvidenceMutator = new MutatorWithState(networkErrorService)
   }
@@ -59,6 +77,9 @@ export class CvcMolecularProfileReviseForm implements OnInit, AfterViewInit {
       .subscribe({
         next: ({ data: { molecularProfile } }) => {
           if (molecularProfile) {
+
+            this.options.formState.isSimpleMp = !molecularProfile.isComplex
+
             this.model = {
               id: molecularProfile.id,
               fields: molecularProfileToModelFields(molecularProfile),
diff --git a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.query.gql b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.query.gql
index 480868ea5..fc8e55f30 100644
--- a/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.query.gql
+++ b/client/src/app/forms2/config/molecular-profile-revise/molecular-profile-revise.query.gql
@@ -14,6 +14,7 @@ fragment RevisableMolecularProfileFields on MolecularProfile {
     citationId
   }
   molecularProfileAliases
+  isComplex
 }
 
 mutation SuggestMolecularProfileRevision(
diff --git a/client/src/app/forms2/types/tag-input/tag-input.type.html b/client/src/app/forms2/types/tag-input/tag-input.type.html
index 805e87013..49bf2eae5 100644
--- a/client/src/app/forms2/types/tag-input/tag-input.type.html
+++ b/client/src/app/forms2/types/tag-input/tag-input.type.html
@@ -1,12 +1,13 @@
 <div>
   <cvc-string-tag
     *ngFor="let tag of tags$ | ngrxPush"
-    [cvcMode]="'closeable'"
+    [cvcMode]="this.props.disabled ? 'default' : 'closeable'"
     [cvcLabel]="tag"
     (cvcOnClose)="tagClosed(tag)"></cvc-string-tag>
-    <input nz-input 
-      (keydown.enter)="onEnter($event)" 
+    <input nz-input
+      [disabled]="this.props.disabled"
+      (keydown.enter)="onEnter($event)"
       [placeholder]="this.props.placeholder" />
 </div>
 
-<input hidden nz-input [formControl]="formControl" [formlyAttributes]="field"/>
\ No newline at end of file
+<input hidden nz-input [formControl]="formControl" [formlyAttributes]="field"/>
diff --git a/client/src/app/forms2/types/tag-input/tag-input.type.ts b/client/src/app/forms2/types/tag-input/tag-input.type.ts
index cbefe800b..f73eb59b7 100644
--- a/client/src/app/forms2/types/tag-input/tag-input.type.ts
+++ b/client/src/app/forms2/types/tag-input/tag-input.type.ts
@@ -55,7 +55,7 @@ export class CvcBaseInputField extends BaseInputMixin implements AfterViewInit {
       placeholder: 'Enter value and hit Return'
     },
   }
-  
+
   tags$ = new Subject<string[]>()
   values = new Set<string>()
 
@@ -73,7 +73,7 @@ export class CvcBaseInputField extends BaseInputMixin implements AfterViewInit {
     this.tags$.next(arr)
     this.formControl.setValue(arr)
   }
-  
+
   tagClosed(tag: string) {
     this.values.delete(tag)
     let arr = Array.from(this.values)
diff --git a/client/src/app/generated/civic.apollo-helpers.ts b/client/src/app/generated/civic.apollo-helpers.ts
index 7f763ceb2..1b3861df8 100644
--- a/client/src/app/generated/civic.apollo-helpers.ts
+++ b/client/src/app/generated/civic.apollo-helpers.ts
@@ -797,7 +797,7 @@ export type ModeratedObjectFieldFieldPolicy = {
 	id?: FieldPolicy<any> | FieldReadFunction<any>,
 	link?: FieldPolicy<any> | FieldReadFunction<any>
 };
-export type MolecularProfileKeySpecifier = ('assertions' | 'comments' | 'deprecated' | 'deprecatedVariants' | 'deprecationEvent' | 'description' | 'events' | 'evidenceCountsByStatus' | 'evidenceItems' | 'flagged' | 'flags' | 'id' | 'lastAcceptedRevisionEvent' | 'lastCommentEvent' | 'lastSubmittedRevisionEvent' | 'link' | 'molecularProfileAliases' | 'molecularProfileScore' | 'name' | 'parsedName' | 'rawName' | 'revisions' | 'sources' | 'variants' | MolecularProfileKeySpecifier)[];
+export type MolecularProfileKeySpecifier = ('assertions' | 'comments' | 'deprecated' | 'deprecatedVariants' | 'deprecationEvent' | 'description' | 'events' | 'evidenceCountsByStatus' | 'evidenceItems' | 'flagged' | 'flags' | 'id' | 'isComplex' | 'lastAcceptedRevisionEvent' | 'lastCommentEvent' | 'lastSubmittedRevisionEvent' | 'link' | 'molecularProfileAliases' | 'molecularProfileScore' | 'name' | 'parsedName' | 'rawName' | 'revisions' | 'sources' | 'variants' | MolecularProfileKeySpecifier)[];
 export type MolecularProfileFieldPolicy = {
 	assertions?: FieldPolicy<any> | FieldReadFunction<any>,
 	comments?: FieldPolicy<any> | FieldReadFunction<any>,
@@ -811,6 +811,7 @@ export type MolecularProfileFieldPolicy = {
 	flagged?: FieldPolicy<any> | FieldReadFunction<any>,
 	flags?: FieldPolicy<any> | FieldReadFunction<any>,
 	id?: FieldPolicy<any> | FieldReadFunction<any>,
+	isComplex?: FieldPolicy<any> | FieldReadFunction<any>,
 	lastAcceptedRevisionEvent?: FieldPolicy<any> | FieldReadFunction<any>,
 	lastCommentEvent?: FieldPolicy<any> | FieldReadFunction<any>,
 	lastSubmittedRevisionEvent?: FieldPolicy<any> | FieldReadFunction<any>,
diff --git a/client/src/app/generated/civic.apollo.ts b/client/src/app/generated/civic.apollo.ts
index ee06a5d52..e67cdfbbc 100644
--- a/client/src/app/generated/civic.apollo.ts
+++ b/client/src/app/generated/civic.apollo.ts
@@ -2051,6 +2051,7 @@ export type MolecularProfile = Commentable & EventOriginObject & EventSubject &
   /** List and filter flags. */
   flags: FlagConnection;
   id: Scalars['Int'];
+  isComplex: Scalars['Boolean'];
   lastAcceptedRevisionEvent?: Maybe<Event>;
   lastCommentEvent?: Maybe<Event>;
   lastSubmittedRevisionEvent?: Maybe<Event>;
@@ -6111,9 +6112,9 @@ export type MolecularProfileRevisableFieldsQueryVariables = Exact<{
 }>;
 
 
-export type MolecularProfileRevisableFieldsQuery = { __typename: 'Query', molecularProfile?: { __typename: 'MolecularProfile', id: number, description?: string | undefined, molecularProfileAliases: Array<string>, sources: Array<{ __typename: 'Source', id: number, sourceType: SourceSource, citation?: string | undefined, citationId: string }> } | undefined };
+export type MolecularProfileRevisableFieldsQuery = { __typename: 'Query', molecularProfile?: { __typename: 'MolecularProfile', id: number, description?: string | undefined, molecularProfileAliases: Array<string>, isComplex: boolean, sources: Array<{ __typename: 'Source', id: number, sourceType: SourceSource, citation?: string | undefined, citationId: string }> } | undefined };
 
-export type RevisableMolecularProfileFieldsFragment = { __typename: 'MolecularProfile', id: number, description?: string | undefined, molecularProfileAliases: Array<string>, sources: Array<{ __typename: 'Source', id: number, sourceType: SourceSource, citation?: string | undefined, citationId: string }> };
+export type RevisableMolecularProfileFieldsFragment = { __typename: 'MolecularProfile', id: number, description?: string | undefined, molecularProfileAliases: Array<string>, isComplex: boolean, sources: Array<{ __typename: 'Source', id: number, sourceType: SourceSource, citation?: string | undefined, citationId: string }> };
 
 export type SuggestMolecularProfileRevisionMutationVariables = Exact<{
   input: SuggestMolecularProfileRevisionInput;
@@ -8313,6 +8314,7 @@ export const RevisableMolecularProfileFieldsFragmentDoc = gql`
     citationId
   }
   molecularProfileAliases
+  isComplex
 }
     `;
 export const SubmittableVariantGroupFieldsFragmentDoc = gql`
diff --git a/client/src/app/generated/server.model.graphql b/client/src/app/generated/server.model.graphql
index 4ad246df0..8e21766ac 100644
--- a/client/src/app/generated/server.model.graphql
+++ b/client/src/app/generated/server.model.graphql
@@ -3508,6 +3508,7 @@ type MolecularProfile implements Commentable & EventOriginObject & EventSubject
     state: FlagState
   ): FlagConnection!
   id: Int!
+  isComplex: Boolean!
   lastAcceptedRevisionEvent: Event
   lastCommentEvent: Event
   lastSubmittedRevisionEvent: Event
diff --git a/client/src/app/generated/server.schema.json b/client/src/app/generated/server.schema.json
index e18d3cac2..4b7e62aa8 100644
--- a/client/src/app/generated/server.schema.json
+++ b/client/src/app/generated/server.schema.json
@@ -15922,6 +15922,22 @@
               "isDeprecated": false,
               "deprecationReason": null
             },
+            {
+              "name": "isComplex",
+              "description": null,
+              "args": [],
+              "type": {
+                "kind": "NON_NULL",
+                "name": null,
+                "ofType": {
+                  "kind": "SCALAR",
+                  "name": "Boolean",
+                  "ofType": null
+                }
+              },
+              "isDeprecated": false,
+              "deprecationReason": null
+            },
             {
               "name": "lastAcceptedRevisionEvent",
               "description": null,
diff --git a/server/app/graphql/types/entities/molecular_profile_type.rb b/server/app/graphql/types/entities/molecular_profile_type.rb
index 42793bb7e..b3bf05d05 100644
--- a/server/app/graphql/types/entities/molecular_profile_type.rb
+++ b/server/app/graphql/types/entities/molecular_profile_type.rb
@@ -27,6 +27,7 @@ class MolecularProfileType < Types::BaseObject
     field :deprecation_event, Types::Entities::EventType, null: true
     field :molecular_profile_score, Float, null: false
     field :evidence_counts_by_status, Types::MolecularProfile::EvidenceItemsByStatusType, null: false
+    field :is_complex, Boolean, null: false
 
     def raw_name
       object.name
@@ -90,5 +91,11 @@ def evidence_counts_by_status
         end
       end
     end
+
+    def is_complex
+      Loaders::AssociationCountLoader.for(MolecularProfile, association: :variants).load(object.id).then do |count|
+        count > 1
+      end
+    end
   end
 end
diff --git a/server/app/models/variant.rb b/server/app/models/variant.rb
index ca2c39029..11d120c78 100644
--- a/server/app/models/variant.rb
+++ b/server/app/models/variant.rb
@@ -85,6 +85,17 @@ def reindex_mps
   def on_revision_accepted
     SetAlleleRegistryIdSingleVariant.perform_later(self) if Rails.env.production?
     GenerateOpenCravatLink.perform_later(self)
+    update_single_variant_mp_aliases
+  end
+
+  def update_single_variant_mp_aliases
+    svmp = self.single_variant_molecular_profile
+    aliases = self.variant_aliases
+    mp_aliases = aliases.map do |a|
+      MolecularProfileAlias.where(name: a).first_or_create!
+    end
+
+    svmp.molecular_profile_aliases = mp_aliases
   end
 
   def unique_name_in_context

From bcb0376c2b829aaa283a7ced63001618cb4f2517 Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Mon, 28 Aug 2023 15:47:25 -0500
Subject: [PATCH 13/14] add liftover script to sync variant and simple mp
 aliases

---
 server/misc_scripts/liftover_variant_aliases.rb | 13 +++++++++++++
 1 file changed, 13 insertions(+)
 create mode 100644 server/misc_scripts/liftover_variant_aliases.rb

diff --git a/server/misc_scripts/liftover_variant_aliases.rb b/server/misc_scripts/liftover_variant_aliases.rb
new file mode 100644
index 000000000..d19adcc0f
--- /dev/null
+++ b/server/misc_scripts/liftover_variant_aliases.rb
@@ -0,0 +1,13 @@
+#for all variants, find the single variant MP, get a list of its aliases and the variant's alias. merge the lists and store as MP aliases
+Variant.find_each do |v|
+  if v.variant_aliases.any?
+    svmp = v.single_variant_molecular_profile
+    all_aliases = (svmp.molecular_profile_aliases.pluck(:name) + v.variant_aliases.pluck(:name)).uniq
+
+    alias_records = all_aliases.map do |a|
+      MolecularProfileAlias.where(name: a).first_or_create!
+    end
+
+    svmp.molecular_profile_aliases = alias_records
+  end
+end

From e8ea5c3ace7cb85d254d4b18a2fafeed1fc1c34e Mon Sep 17 00:00:00 2001
From: Adam Coffman <acoffman@wustl.edu>
Date: Mon, 28 Aug 2023 16:06:46 -0500
Subject: [PATCH 14/14] dont apply alias revisions to simple mps

---
 .../suggest_molecular_profile_revision.rb       | 17 ++++++++++++-----
 1 file changed, 12 insertions(+), 5 deletions(-)

diff --git a/server/app/models/actions/suggest_molecular_profile_revision.rb b/server/app/models/actions/suggest_molecular_profile_revision.rb
index 09a91931e..091a0349c 100644
--- a/server/app/models/actions/suggest_molecular_profile_revision.rb
+++ b/server/app/models/actions/suggest_molecular_profile_revision.rb
@@ -1,9 +1,16 @@
 class Actions::SuggestMolecularProfileRevision < Actions::SuggestRevisionSet
   def editable_fields
-    [
-      :description,
-      :source_ids,
-      :molecular_profile_alias_ids,
-    ]
+    if existing_obj.is_complex?
+        [
+          :description,
+          :source_ids,
+          :molecular_profile_alias_ids,
+        ]
+      else
+        [
+          :description,
+          :source_ids,
+        ]
+      end
   end
 end