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Issues list

Alpha fold dependencies plot protein command not executing
#1040 opened Nov 9, 2024 by SatyajitMishra1
Error in ' install dependencies"
#1039 opened Nov 6, 2024 by christinapapa
Failed to build docker on cuda:11.0.3-base
#1038 opened Nov 2, 2024 by hyeonLIB
Not able to run prediction __ AlphaFold2.ipynb
#1037 opened Nov 2, 2024 by asm-cell
does alphafold 2 explicitly model co-evolution?
#1036 opened Oct 25, 2024 by PatschD
Alphafold stopped using GPU after upgrade to Ubuntu 24.04.1 (noble)
#1035 opened Oct 24, 2024 by hofmank0
3
README does not mention that rsync is needed for DB download
#1032 opened Oct 18, 2024 by MamfTheKramf
how is alpha fold 3 trained
#1031 opened Oct 16, 2024 by joepareti54
requirement:tensorflow-cpu
#1030 opened Oct 15, 2024 by nibingwei123
Installation without docker
#1026 opened Oct 8, 2024 by fglaser
lost some output files
#1023 opened Oct 6, 2024 by xjhzjucas
Endless "[Perf]: MatMul reference implementation being executed generated" messages and dramatic inference slowdown upon updating to docker 27.3.1
#1021 opened Sep 23, 2024 by lucajovine
3
Could we track how long one AlphaFold program run?
#1018 opened Sep 20, 2024 by WenWu-Bio
1
Dockerfile problem: jaxlib-0.1.75+cuda11.cudnn805-cp37-none-manylinux2010_x86_64.whl is not a supported wheel on this platform
#1017 opened Sep 19, 2024 by WenWu-Bio
Segment default 段错误，import pdbfixer，and from stimtk import app
#1015 opened Sep 11, 2024 by zhangyichen534
1
Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error
#997 opened Aug 2, 2024 by juliocesar-io
Question about the self-distillation dataset
#996 opened Aug 1, 2024 by raouf-keskes
Running AlphaFold on models larger than AMD GPU available memory
#958 opened Jul 23, 2024 by dipietrantonio
4
Is the AlphaFold2 PDB structures available for download predicted using the UniProt canonical sequence?
#957 opened Jul 17, 2024 by yang-arina
Inference speed question.
#956 opened Jul 11, 2024 by Lix1993
ValueError: Minimization failed after 100 attempts.
#955 opened Jun 30, 2024 by zcswnm
4
Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9
#953 opened Jun 26, 2024 by rafaeltiveron
7
Cannot download pdb70 database
#952 opened Jun 25, 2024 by Lix1993
@YiningWang2
#951 opened Jun 21, 2024 by fereidoon27
optimize alphafold2 speed on different GPUs
#950 opened Jun 18, 2024 by gorliver
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