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Instalation end with "Command "python setup.py egg_info" failed with error code 1" #43

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eladhen opened this issue Mar 28, 2018 · 1 comment
Open

Instalation end with "Command "python setup.py egg_info" failed with error code 1" #43

eladhen opened this issue Mar 28, 2018 · 1 comment

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@eladhen
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eladhen commented Mar 28, 2018

I'm trying to install glucometerutils to get data from my Freestyle Libre. I'm running Linux Mint 18.3. Python 3.5.2. I'm by no means a developer so I'm probably doing something wrong, but I would really want to run this.

This is the output of me trying to follow the Example Usage:

eladhen@elad-mint ~ $ python3 -m venv $(pwd)/glucometerutils-venv
eladhen@elad-mint ~ $ . glucometerutils-venv/bin/activate
(glucometerutils-venv) eladhen@elad-mint ~ $ DRIVER=fslibre
(glucometerutils-venv) eladhen@elad-mint ~ $ pip install git+https://github.com/Flameeyes/glucometerutils.git#egg=project[${DRIVER}]
Collecting project[fslibre] from git+https://github.com/Flameeyes/glucometerutils.git#egg=project[fslibre]
  Cloning https://github.com/Flameeyes/glucometerutils.git to /tmp/pip-build-e_e8w2sk/project
  Running setup.py (path:/tmp/pip-build-e_e8w2sk/project/setup.py) egg_info for package project produced metadata for project name glucometerutils. Fix your #egg=project fragments.
Collecting construct (from glucometerutils)
  Downloading construct-2.9.41.tar.gz (54kB)
    100% |████████████████████████████████| 61kB 232kB/s 
Collecting hidapi (from glucometerutils)
  Downloading hidapi-0.7.99.post21.tar.gz (51kB)
    100% |████████████████████████████████| 61kB 1.4MB/s 
    Complete output from command python setup.py egg_info:
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Plex/Scanners.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Plex/Actions.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Pythran.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Lexicon.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Scanning.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Parsing.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Visitor.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/FlowControl.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Code.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Runtime/refnanny.pyx because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/FusedNode.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Tempita/_tempita.py because it changed.
    Compiling /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/StringIOTree.py because it changed.
    [ 1/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Code.py
    [ 2/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/FlowControl.py
    [ 3/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/FusedNode.py
    [ 4/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Lexicon.py
    [ 5/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Parsing.py
    [ 6/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Pythran.py
    [ 7/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Scanning.py
    [ 8/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Compiler/Visitor.py
    [ 9/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Plex/Actions.py
    [10/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Plex/Scanners.py
    [11/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Runtime/refnanny.pyx
    [12/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/StringIOTree.py
    [13/13] Cythonizing /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Tempita/_tempita.py
    Unable to find pgen, not compiling formal grammar.
    /usr/lib/python3.5/distutils/dist.py:261: UserWarning: Unknown distribution option: 'python_requires'
      warnings.warn(msg)
    warning: no files found matching '2to3-fixers.txt'
    warning: no files found matching 'Doc/*'
    warning: no files found matching '*.pyx' under directory 'Cython/Debugger/Tests'
    warning: no files found matching '*.pxd' under directory 'Cython/Debugger/Tests'
    warning: no files found matching '*.pxd' under directory 'Cython/Utility'
    warning: no files found matching 'pyximport/README'
    /tmp/easy_install-t6bbaz0k/Cython-0.28.1/Cython/Plex/Scanners.c:19:20: fatal error: Python.h: No such file or directory
    compilation terminated.
    Traceback (most recent call last):
      File "/usr/lib/python3.5/distutils/unixccompiler.py", line 118, in _compile
        extra_postargs)
      File "/usr/lib/python3.5/distutils/ccompiler.py", line 909, in spawn
        spawn(cmd, dry_run=self.dry_run)
      File "/usr/lib/python3.5/distutils/spawn.py", line 36, in spawn
        _spawn_posix(cmd, search_path, dry_run=dry_run)
      File "/usr/lib/python3.5/distutils/spawn.py", line 159, in _spawn_posix
        % (cmd, exit_status))
    distutils.errors.DistutilsExecError: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
        dist.run_commands()
      File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
        self.run_command(cmd)
      File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/bdist_egg.py", line 161, in run
        cmd = self.call_command('install_lib', warn_dir=0)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/bdist_egg.py", line 147, in call_command
        self.run_command(cmdname)
      File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/install_lib.py", line 23, in run
        self.build()
      File "/usr/lib/python3.5/distutils/command/install_lib.py", line 109, in build
        self.run_command('build_ext')
      File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/build_ext.py", line 49, in run
        _build_ext.run(self)
      File "/usr/lib/python3.5/distutils/command/build_ext.py", line 338, in run
        self.build_extensions()
      File "/usr/lib/python3.5/distutils/command/build_ext.py", line 447, in build_extensions
        self._build_extensions_serial()
      File "/usr/lib/python3.5/distutils/command/build_ext.py", line 472, in _build_extensions_serial
        self.build_extension(ext)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/build_ext.py", line 174, in build_extension
        _build_ext.build_extension(self, ext)
      File "/usr/lib/python3.5/distutils/command/build_ext.py", line 532, in build_extension
        depends=ext.depends)
      File "/usr/lib/python3.5/distutils/ccompiler.py", line 574, in compile
        self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
      File "/usr/lib/python3.5/distutils/unixccompiler.py", line 120, in _compile
        raise CompileError(msg)
    distutils.errors.CompileError: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 154, in save_modules
        yield saved
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 195, in setup_context
        yield
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 243, in run_setup
        DirectorySandbox(setup_dir).run(runner)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 273, in run
        return func()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 242, in runner
        _execfile(setup_script, ns)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 46, in _execfile
        exec(code, globals, locals)
      File "/tmp/easy_install-t6bbaz0k/Cython-0.28.1/setup.py", line 285, in <module>
      File "/usr/lib/python3.5/distutils/core.py", line 163, in setup
        raise SystemExit("error: " + str(msg))
    SystemExit: error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 1087, in run_setup
        run_setup(setup_script, args)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 246, in run_setup
        raise
      File "/usr/lib/python3.5/contextlib.py", line 77, in __exit__
        self.gen.throw(type, value, traceback)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 195, in setup_context
        yield
      File "/usr/lib/python3.5/contextlib.py", line 77, in __exit__
        self.gen.throw(type, value, traceback)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 166, in save_modules
        saved_exc.resume()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 141, in resume
        six.reraise(type, exc, self._tb)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/pkg_resources/_vendor/six.py", line 685, in reraise
        raise value.with_traceback(tb)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 154, in save_modules
        yield saved
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 195, in setup_context
        yield
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 243, in run_setup
        DirectorySandbox(setup_dir).run(runner)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 273, in run
        return func()
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 242, in runner
        _execfile(setup_script, ns)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 46, in _execfile
        exec(code, globals, locals)
      File "/tmp/easy_install-t6bbaz0k/Cython-0.28.1/setup.py", line 285, in <module>
      File "/usr/lib/python3.5/distutils/core.py", line 163, in setup
        raise SystemExit("error: " + str(msg))
    SystemExit: error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-e_e8w2sk/hidapi/setup.py", line 123, in <module>
        install_requires = ['setuptools>=19.0'],
      File "/usr/lib/python3.5/distutils/core.py", line 108, in setup
        _setup_distribution = dist = klass(attrs)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/dist.py", line 269, in __init__
        self.fetch_build_eggs(attrs['setup_requires'])
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/dist.py", line 313, in fetch_build_eggs
        replace_conflicting=True,
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 826, in resolve
        dist = best[req.key] = env.best_match(req, ws, installer)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1092, in best_match
        return self.obtain(req, installer)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1104, in obtain
        return installer(requirement)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/dist.py", line 380, in fetch_build_egg
        return cmd.easy_install(req)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 663, in easy_install
        return self.install_item(spec, dist.location, tmpdir, deps)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 693, in install_item
        dists = self.install_eggs(spec, download, tmpdir)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 873, in install_eggs
        return self.build_and_install(setup_script, setup_base)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 1101, in build_and_install
        self.run_setup(setup_script, setup_base, args)
      File "/home/eladhen/glucometerutils-venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 1089, in run_setup
        raise DistutilsError("Setup script exited with %s" % (v.args[0],))
    distutils.errors.DistutilsError: Setup script exited with error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-e_e8w2sk/hidapi/
You are using pip version 8.1.1, however version 9.0.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
@hexop
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hexop commented Feb 29, 2020 •
edited
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I ran into the same problem, the solution is to install the python 3 development files, it should be called python3-dev or python3-devel.
I also had to install libsub-devel and set my C compiler (CC variable) to gcc instead of clang.

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@eladhen @hexop