eGFRD Crash?

[Jintram]

I've tried running my rebind sample a load of times, it made eGFRD crash after 4930 runs. But the problem doesn't seem to come from my sample code..

Run 4931.

Traceback (most recent call last):
File "run.py", line 315, in
int(sys.argv[2]), T_list, int(sys.argv[4]))
File "run.py", line 78, in run
r_list, t_list = singlerun(T_list, N_B, N_X)
File "run.py", line 195, in singlerun
dd = s.clear_volume(A_pos, float(A['radius'])) # returns a list of
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 530, in clear_volume
return self.burst_objs(neighbors)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 522, in burst_objs
b = self.burst_obj(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 499, in burst_obj
obj = self.burst_single(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 1018, in burst_single
newsingle = self.propagate_single(single)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 672, in propagate_single
newpos = single.draw_new_position(single.dt, single.event_type)
File "/storage1/wehrens/myfork_egfrd/single.py", line 194, in draw_new_position
r = draw_r_wrapper(gf, dt, self.get_mobility_radius())
File "/storage1/wehrens/myfork_egfrd/greens_function_wrapper.py", line 52, in draw_r_wrapper
(str(e), rnd, dt, gf.dump()))
AttributeError: 'GreensFunction3DAbsSym' object has no attribute 'dump'

[TheOtherOne]

Hmmm, klinkt wel duidelijk toch?
'GreensFunction3DAbsSym' object has no attribute 'dump'
klopt dit of kletst hij echt uit z'n nek? De rest is alleen maar traceback, right?

Groetjes,

Laurens

-----Original message-----
To: Laurens Bossen [email protected];
From: Jintram [email protected]
Sent: Tue 17-05-2011 11:02
Subject: [egfrd] eGFRD Crash? (#13)

I've tried running my rebind sample a load of times, it made eGFRD crash after
4930 runs. But the problem doesn't seem to come from my sample code..

Run 4931.

Traceback (most recent call last):
File "run.py", line 315, in
int(sys.argv[2]), T_list, int(sys.argv[4]))
File "run.py", line 78, in run
r_list, t_list = singlerun(T_list, N_B, N_X)
File "run.py", line 195, in singlerun
dd = s.clear_volume(A_pos, float(A['radius'])) # returns a list of
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 530, in clear_volume
return self.burst_objs(neighbors)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 522, in burst_objs
b = self.burst_obj(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 499, in burst_obj
obj = self.burst_single(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 1018, in burst_single
newsingle = self.propagate_single(single)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 672, in propagate_single
newpos = single.draw_new_position(single.dt, single.event_type)
File "/storage1/wehrens/myfork_egfrd/single.py", line 194, in
draw_new_position
r = draw_r_wrapper(gf, dt, self.get_mobility_radius())
File "/storage1/wehrens/myfork_egfrd/greens_function_wrapper.py", line 52, in
draw_r_wrapper
(str(e), rnd, dt, gf.dump()))
AttributeError: 'GreensFunction3DAbsSym' object has no attribute 'dump'

Reply to this email directly or view it on GitHub:
#13

[TheOtherOne]

Hmmm, just found out that this is in any case bad -> drawR apparently failed and an exception is thrown (unsucessfully)...
Nu ook convergentieproblemen in 3DAbsSym? Heel fijn..

grz,

Laurens

-----Original message-----
To: Laurens Bossen [email protected];
From: Jintram [email protected]
Sent: Tue 17-05-2011 11:02
Subject: [egfrd] eGFRD Crash? (#13)

I've tried running my rebind sample a load of times, it made eGFRD crash after
4930 runs. But the problem doesn't seem to come from my sample code..

Run 4931.

Traceback (most recent call last):
File "run.py", line 315, in
int(sys.argv[2]), T_list, int(sys.argv[4]))
File "run.py", line 78, in run
r_list, t_list = singlerun(T_list, N_B, N_X)
File "run.py", line 195, in singlerun
dd = s.clear_volume(A_pos, float(A['radius'])) # returns a list of
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 530, in clear_volume
return self.burst_objs(neighbors)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 522, in burst_objs
b = self.burst_obj(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 499, in burst_obj
obj = self.burst_single(obj)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 1018, in burst_single
newsingle = self.propagate_single(single)
File "/storage1/wehrens/myfork_egfrd/egfrd.py", line 672, in propagate_single
newpos = single.draw_new_position(single.dt, single.event_type)
File "/storage1/wehrens/myfork_egfrd/single.py", line 194, in
draw_new_position
r = draw_r_wrapper(gf, dt, self.get_mobility_radius())
File "/storage1/wehrens/myfork_egfrd/greens_function_wrapper.py", line 52, in
draw_r_wrapper
(str(e), rnd, dt, gf.dump()))
AttributeError: 'GreensFunction3DAbsSym' object has no attribute 'dump'

Reply to this email directly or view it on GitHub:
#13

[TheJoris]

Dump attribute added to GF3DAbsSym.hpp/cpp and the wrapper. This was missing.