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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 214 114

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 187 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 93

  4. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  5. task-execution-schemas task-execution-schemas Public

    81 28

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 80 32

Repositories

Showing 10 of 125 repositories
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 15 3 100 (2 issues need help) 1 Updated Sep 20, 2024
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 50 Apache-2.0 27 35 (1 issue needs help) 0 Updated Sep 19, 2024
  • data-security Public

    This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.

    ga4gh/data-security’s past year of commit activity
    Python 22 15 3 5 Updated Sep 19, 2024
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 0 Apache-2.0 2 2 1 Updated Sep 19, 2024
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 80 Apache-2.0 32 15 (1 issue needs help) 3 Updated Sep 19, 2024
  • gks-common Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-common’s past year of commit activity
    Makefile 2 Apache-2.0 0 3 1 Updated Sep 19, 2024
  • gks-starter-repo Public

    A starting point to copy and use for teams wishing to quickly define their own schema extensions and profiles to the VA, Cat-VRS or VRS schemas.

    ga4gh/gks-starter-repo’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Sep 17, 2024
  • task-execution-schemas Public
    ga4gh/task-execution-schemas’s past year of commit activity
    81 Apache-2.0 28 44 11 Updated Sep 17, 2024
  • pedigree_family_history_terminology Public
    ga4gh/pedigree_family_history_terminology’s past year of commit activity
    Java 5 Apache-2.0 6 11 0 Updated Sep 17, 2024
  • ga4gh-testbed-api Public

    GA4GH-wide testbed infrastructure for hosting testbed reports

    ga4gh/ga4gh-testbed-api’s past year of commit activity
    Java 1 1 8 1 Updated Sep 15, 2024
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