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Rename Alignment to AlignmentChain #53

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nh13 opened this issue Sep 19, 2023 · 0 comments
Open

Rename Alignment to AlignmentChain #53

nh13 opened this issue Sep 19, 2023 · 0 comments

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@nh13
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nh13 commented Sep 19, 2023

See this comment: https://github.com/fulcrumgenomics/stitch/pull/46/files#r1328960076

The Alignment class is a chain of contiguous alignments, with jumps between alignments in the chain. Therefore, we should rename the class and any variables with this type to AlignmentChain
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