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add command line option for defining outlier clusters #58

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nhoffman opened this issue Jul 12, 2017 · 0 comments
Open

add command line option for defining outlier clusters #58

nhoffman opened this issue Jul 12, 2017 · 0 comments

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@nhoffman
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See https://github.com/fhcrc/deenurp/blob/master/deenurp/subcommands/filter_outliers.py#L399

Within subcommands.filter_outliers.filter_sequences(), outliers.outliers_by_cluster() is called with D=1.5 hard-coded. This should be a parameter that can be passed all the way down from the command line.
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@nhoffman