- #2338 Performance/Bug fix(Cohort Builder): show summary results using cardinality.
- #2371 Performance (File Repo): show statistics results using cardinality.
- #2283 Feature (Member Page, Admin): add a button to "inactivate" a member".
- #2241 Build (App): remove unused code.
- #2353 Build (App): update arranger-components to fix some security warnings.
- #2379 Performance (App): use module-import style when using lodash for potential benefits.
- #2283 Admins can inactivate accounts
- #2393 Enable an Admin user to see all members (private or public)
- #2284 Add 'Report Member' button (under a non-dynamic feature toggle)
- #2277 Add 'Relationship' tab in clinical data xls report - #2285 Improve design of result header in cohort builder
- #2334 Fix File Repository page truncated
- #2298 Fix scrolling in 'Authorized Studies' Card in Dashboard
- #1546 Change message when no access to any study
- #2278 Do not show login page when already logged in
This feature is a hotfix for this issue :
- #2323 Change pedcbioportal link
This feature is a hotfix for this issue :
- #2314 DCF : can not connect to the DCF fence
This feature is a hotfix for this issue :
- #2296 Participant page : cPortalBio link is broken for PNOC study
This feature is a hotfix for this issue :
- #2275 Can't scroll in dashboard
This feature includes :
- #2187 Add Histological Diagnoses filters in the file repository
- #2261 Fix broken link in the resource menu
- #2262 Change order of some fields in the contact information form
- #2265 Set recommended colour for the disconnect button in the profile settings
- #2270 Use more concise wording for public/private tooltip in the profile page
- #2271 Make sure correct access is shown when viewing file details
This feature includes :
- #2245 improve interests suggestion in member page
- #2252 Change maxlength of bio and story
- #2253 Edit Profile : Display max number characters in error message
This feature includes :
This feature includes :
- #14 Add
Method of Sample Procurementto biospecimen report download
This release is a hot fix. We were not able to push files to Cavatica anymore, due to react-emotion removal.
We also fixed this issue:
- #2232 Cavatica modal : Link to cavatica token page is broken
This release includes a new Members page and alterations to the profile page, allowing to search for other members that made their user profile public.
It also fix the data release number in the footer and the bump on the login.
- #727 Incorrect cursor on disabled button hover
- #839 Release # in footer not working
- #1042 Fix bump on login when user already has a token
- #1734 Can't search by biospecimen ID
- #1881 Member page: List member pages
- #1887 Member page: Search members
- #1954 Member page: Invite members to make their profile public
- #2037 Cohort Builder: Participant table empty where filter "Available Data Type" = "No data" is applied
- #2124 Make sure other members profile can be viewed but not edited
- #2130 Redesign User Profile using Ant Design
- #2158 Member page: Filter member search by interests or role
- #2185 Cohort Builder : Need to click twice on a menu element to open it
- #2167 Add a loader while downloading a clinical data report
- #9 Add and reorder columns to Diagnoses / Histological Diagnoses tabs
- #2017 Security : upgrade axios
- #2018 Security : upgrade eslint
- #2063 Reduce kf front-end bundle size
- #2126 Add custom theme for the antd library
- #2133 Update babel to modernize the build system
Hot fix on user creation issue due to regression when working on:
- #1042 Fix bump on login when user already has a token The code had been reverted, therefore issue #1042 is unresolved.
This release includes revamped clinical data reports, available under the Download Data button of the Cohort Builder table.
It also include improvements and bug fixes including Cavatica error management.
- #2031 Download Clinical Data/Biospecimen Data
- #2044 Manage errors during calls to Cavatica API
- #1822 An error should show an Internal error, not a "we are down for maintenance" page
- #1042 Fix bump on login when user already has a token
- #2143 Page routing is broken once a user is logged out
- #2021 Netlify OSS licence for kf-qa : display Netlify logo on the login page
- #2063 Reduce front-end JavaScript bundle size in production
This release fixes major issues :
- #2113 Widget Authorized studies show open access files on study that not contain open access files
- #2105 Duplicate studies in widget Authorized Studies
This release fixes minor issues :
- #2102 Participant page : Rename family table in the clinical tab
- #2105 Dashboard : Widgets Authorized studies broken
This release fixes major issues, most of these concern the public access files :
- #2088 File Repository : Analyze in Cavatica after opening entity page directly does not work
- #2090 Cavatica: can't push open access files
- #2093 Filter on value * for ACL is not working
- #2091 Participant page: Do not repeat diagnoses and phenotypes that are not shared with other family members in the family table
This release fixes performance issues in the File Repository along with some bug fixes.
- #2027 File Repository: Remove some fields from "Browse all" to fix performance issues
- #1564 File Repository: Browse all filters: Return only the values that match the query
- #2080 Cohort Builder: Remove the "Beta" banner 🎉
- #2060 Cohort Builder: Participants are displayed as "Kf Id" instead of "Participants Ids" in the Cohort Builder
- #2004 File Repository: Remove weird column names in columns selection dropdown
- #2072 Download Clinical Data: HPOs related columns are always empty
This release introduces Histological Diagnoses, a revamping of the member page, some backend features for members search (front end coming later), along with some bug fixes.
- #2028 Histological Diagnoses: Add filters to Cohort Builder
- #2019 Histological Diagnoses: Modify Diagnoses Table in Participant Entity Page to include Specimen ID and an icon
- #2068 Histological Diagnoses: add diagnostic icon to biospecimen chip
- #1247 Member page: Make my profile non-searchable (private profile)
- #1287 Member page: View someone's member's page
- #2023 Search by entity IDs: frontend
- #109 Search by entity IDs: added an endpoint to query for ids
- #34 ETL: Create field for Histological Diagnoses
- #52 Histological Diagnoses: Add diagnoses into biospecimens
- #25 Member page: Store user preference for private profile
- #46 Member Page: Index members in Elastic Search so we can search for them
- #2041 File Repo: File without participants returns an error
- #2048 User setting page: Replace the Gen3 Logo
- #2072 Download Clinical Data : HPOs related columns are always empty
- #2004 Weird column names in File Repository
- #2041 File Repo: File without participants returns an error
This release makes ORCID feature available for everybody, and improves error messages in case of errors during login with ORCID.
- #2016 OrcId Login : Make available to greater public
This release introduces bug fixes.
- #2020 Cohort Builder: MONDO link doesn't appear in the table view on the cohort builder
- #1961 Open access files should be accessible for everyone
- #2005 Participant entity page: Don't display the sequencing data table if empty
This release includes a way to deploy the OrcId login button in production, but hidden. This is only done for testing purposes.
- #2014 Orcid Login : hidden deploy to test in production
This release concentrates on bug fixes following the release 2.7.0 and contains no new features.
- #2001 Broken link in the maintenance page
- #2007 Participant clinical tab returns a Maintenance page !!
- #2008 Participant Entity page: Empty lines in the Family members table
Data fix, introduced 2019-08-08
- #2003 Rename study "Consortium: Pediatric Brain Tumors - CBTTC" to "Pediatric Brain Tumor Atlas: CBTTC"
This release concentrates on renaming the studies and adding the participant entity page, including family and phenotype data. The format of family and phenotype data has been corrected in the ETL as part of that effort.
It also introduces improvements and bug fixes.
- #1851 Database script to rename studies
- #1953 Participant pages: Add Phenotypes table
- #1956 ETL: Change the
participant.phenotypefield to a nested type - #1240 Filters: Show selected items first
- #1962 Dashboard: Saved queries widget: Template file query "Female probands with cleft palate..." is invalid
- Note: fixes the query for new users only
- kf-portal-etl#90 The phenotypes for each participant are missing
This release introduces new features and bug fixes.
- #1123 Participant Page
- #1829 Participant Page: Links to these pages from elsewhere in the portal
- #1880 Participant Page: Add family ID
- #1950 Participant Page: add PedcBioPortal link
- Null dates are rendered as an invalid date #1960
This release introduces a bug fix.
- #1943 Put back "Beta release" banner
This release introduces new features and bug fixes.
- #1115 Cohort Builder: Saved queries widget with Virtual Studies
- #1685 Change the link of studies and participants clickable diagrams in the dashboard to point to the cohort buider
- #1721 Saved queries: list virtual studies
- #1722 Saved queries: show the description of each virtual study
- #1723 Saved queries card: delete virtual studies
- #1728 Remove "Beta release" banner
- #1807 Change the link of Frequent diagnoses clickable diagrams in the dashboard to point to the cohort buider
- #1833 Remove "Virtual Study" in the title
- #1849 Cohort builder: Add the "Consent Type" field in the filters
- #1853 Saved queries: list virtual studies
- #1866 Cohort builder: Show "You have unsaved changes" when relevant
- #1867 Cohort builder: Make the description of the virtual study bigger
- #1883 The title of the page should always be the same
- #1895 Styling simplification for the reset zoom button
- #1903 Age at diagnosis chart: use a comma for ranges
- #1906 Rename edit name dialog and tooltip
- #1417 The Virtual Study dropdown is not populated when you navigate back to Explore Data
- #1471 Firefox is reverse sorting the Cohort Builder diagnosis card
- #1506 Open #files link in new tab redirects to dashboard
- #1520 Resources Menu is underneath columns selector on File Repository
- #1597 External links need an non-breaking space
- #1674 Cannot see the title of someone else's virtual study
- #1675 A line at the top of the participant table is not at the right location
- #1681 Bar charts: Number of participant should not be a fraction (have decimals)
- #1697 Available Data bar chart: minimum column height
- #1737 Dynamically update the data version
- #1830 Cohort builder: The "New" button should be enabled, when a virtual study is open
- #1835 "Age at diagnosis" chart: range should not overlap
- #1865 Some widgets overlap on top of the menu
- #1869 Active tab in Cohort Builder is lost
- #1872 Long query parameters overlaps the count of participants
- #1875 Available Data card: the titles at the bottom are cropped on Firefox
- #1876 Available Data card: the title on the left of the chart overlaps on Firefox
- #1877 Save dialog: pressing enter should not close the dialog anymore
- #1885 Saved queries widget: persistence of which tab is selected
- #1886 Available Data chart: sort the columns from most to least
- #1891 Issues with "Save" and "Load"
- #1897 Dashboard clickable charts: create a new query in a new virtual study
- #1921 Cohort builder: The line height of the description of the virtual study is too high
- #1930 Update data version API in prod
This release introduces new features and bug fixes.
- #1387 Virtual Study: Add a description
- #1467 Survival chart: reset zoom
- #1685 Change the link of studies and participants clickable diagrams in the dashboard to point to the cohort buider
- #1688 Query area: show number of participants for a query
- #1724 Persistence of which tab is active in the cohort builder
- #1795 Save dialog: pressing enter should close this dialog
- #1810 File page: Put "--" for missing values for "Sequencing read properties"
- #1820 Corrupted Virtual Studies in saved Riff or in the local storage cause the application to break on load
- #1836 Virtual studies: The vertical space for the comment section is too big
- #1832 Shared virtual study: the edit button should not be visible
This release introduces a few features and bug fixes after a larger release.
- #1741 Clickable charts: Most Frequent Diagnoses
- #1802 Change title of "Most Frequent Diagnoses" chart in the cohort builder
- #1803 Update field names in exported Participant data TSV file
- #1695 Remove field phenotype.ancestral_hpo_ids
- #1801 Clicking on a chart crashes the application when the virtual study contains a reference
As part of this release, we have forked the Overture projects to the Fids First team: Ego, Persona, Rollcall and Riff. We also improved significantly the documentation for the deployment of all services. We standardized the deployment process for Riff. We also did the investigation and implementation of the backend for login in with ORCID with Ego. Notably, many charts in the cohort builder are now clickable, and we've implemented the save/save as buttons. We've also updated the UI for the new ontological field format. See the list below for the issue numbers on GitHub.
- #1636 Update UI for the new ontological field format
- #1776 Use Diagnosis (Mondo) in the participants table
- #1533 Save a virtual study: both save and save as
- #1782 Virtual studies: Add an "Edit" button
- #1699 Limit the length of virtual study names in the dialog
- #1644 Save a virtual study: Check the permissions in Riff and Persona
- #1465 Cohort Builder: Make pie charts clickable in order to add a query term to the active query
- #1739 Clickable chart: Available Data
- #1639 "Search all filters": cannot find the "Age" filter
- #1705 Queries are lost when you navigate back to Explore Data
- #1707 Number of families is counted when it's none
- #1714 "is not" filter shows "is not" only when more than one item is checked
- #1779 When we disconnect and reconnect, no virtual study should be opened
- #1633 "Is Not" queries are badly displayed in the query section of the cohort builder
- #1753 ETL: Tissue type : anatomical site has their ID but no text value
- #1536 Improve error handling: add error boundaries for widgets
- #1537 Improve performances: implement a central state manager and its debugging tools