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install central software stack in prepared environment for ISC'21 tutorial #59

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boegel opened this issue Jun 14, 2021 · 4 comments
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isc21 Issues related to ISC'21 tutorial

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@boegel
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boegel commented Jun 14, 2021

eb SciPy-bundle-2020.11-foss-2020b.eb HDF5-1.10.7-gompi-2020b.eb

Ideally this goes into /easybuild/{software,modules/all}, or is symlinked there.

@boegel boegel added the isc21 Issues related to ISC'21 tutorial label Jun 14, 2021
@ocaisa
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ocaisa commented Jun 14, 2021

/easybuild is not in NFS so this requires a symlink:

clush -w node[1-1],login1 sudo ln -s /project/def-sponsor00/easybuild /easybuild

This dir will be writable by all users (by default). We may wish to lock it down.

@ocaisa
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ocaisa commented Jun 14, 2021

I'll keep track here of the packages that I also needed since we are not using the compatability layer

clush -w node[1-1],login1 sudo yum install -y openssl-devel
clush -w node[1-1],login1 sudo yum install -y rdma-core-devel
clush -w node[1-1],login1 sudo yum install -y gcc
clush -w node[1-1],login1 sudo yum install -y patch
clush -w node[1-1],login1 sudo yum install -y gcc-c++
clush -w node[1-1],login1 sudo yum install -y bzip2
clush -w node[1-1],login1 sudo yum install -y perl-Data-Dumper

@boegel
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boegel commented Jun 14, 2021

Here's what I usually install (CentOS 8):

sudo dnf install -y epel-release vim python38 python38-pip Lmod which git gcc-c++ make patch file bzip2 unzip tar xz openssl openssl-devel rdma-core-devel

@ocaisa
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ocaisa commented May 24, 2022

Ha, I wish I looked at this when setting up the ISC22 cluster!

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