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Type of the “value” field to match with the current endpoint #23

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msmanoj opened this issue Oct 20, 2020 · 1 comment · Fixed by #28
Open

Type of the “value” field to match with the current endpoint #23

msmanoj opened this issue Oct 20, 2020 · 1 comment · Fixed by #28

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@msmanoj
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msmanoj commented Oct 20, 2020

The type of the value field is currently Float but it is returned in negative log 10 style in the current endpoint. Could you please update the new endpoint to match with the current?

Ensembl REST endpoint:
http://rest.ensembl.org/eqtl/variant_name/homo_sapiens/rs116930996?content-type=application/json;statistic=p-value

New Endpoint URL:
https://www.ebi.ac.uk/eqtl/api/associations?gene_id=ENSG00000139618&qtl_group=Whole_Blood

@jdhayhurst jdhayhurst linked a pull request Nov 9, 2020 that will close this issue
@jdhayhurst
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@msmanoj I've added the neg_log10_pvalue field, which is just the negative log10 p-value calculated on the fly. Please let me know if that's what you need.

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