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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.draegerlab</groupId>
<artifactId>table2model</artifactId>
<!-- Output to jar format -->
<packaging>jar</packaging>
<!-- =================================================================== -->
<!-- General project information -->
<!-- =================================================================== -->
<name>Table2Model</name>
<version>1.0.1</version>
<url>https://github.com/draeger-lab/Table2Model/</url>
<inceptionYear>2021</inceptionYear>
<description>
A parser for systems biology models published in a table form that produces standardized files, such as SBML.
</description>
<properties>
<jdk.version>1.8</jdk.version>
<maven.build.timestamp.format>yyyy</maven.build.timestamp.format>
<year>${maven.build.timestamp}</year>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.license.url>${project.url}/blob/main/LICENSE</project.license.url>
</properties>
<organization>
<name>University of Tübingen</name>
<url>https://uni-tuebingen.de/en/127116</url>
</organization>
<issueManagement>
<system>GitHub Issues</system>
<url>https://github.com/draeger-lab/Table2Model/issues</url>
</issueManagement>
<licenses>
<license>
<name>MIT License</name>
<url>${project.license.url}</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<name>Andreas Dräger</name>
<email>[email protected]</email>
<url>https://github.com/draeger</url>
<id>draeger</id>
<organization>University of Tübingen</organization>
<organizationUrl>https://uni-tuebingen.de/en/127116</organizationUrl>
<timezone>Europe/Berlin</timezone>
<roles>
<role>architect</role>
<role>developer</role>
<role>tester</role>
</roles>
</developer>
</developers>
<!-- =================================================================== -->
<!-- Repositories -->
<!-- =================================================================== -->
<repositories>
<repository>
<id>JSBML-SNAPSHOT</id>
<name>The JSBML Snapshot repository</name>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
<!-- Local libraries are an in-project repository -->
<!-- Add the dependencies and put them in -->
<!-- ${project.basedir}/lib/groupId/artifactId/version/ -->
<repository>
<id>libs</id>
<url>file://${project.basedir}/lib</url>
</repository>
</repositories>
<!-- =================================================================== -->
<!-- Dependencies -->
<!-- =================================================================== -->
<dependencies>
<dependency>
<groupId>org.sbml.jsbml</groupId>
<artifactId>jsbml</artifactId>
<version>1.6-SNAPSHOT</version>
</dependency>
<dependency>
<!-- mvn install:install-file -Dfile=/path/to/sysbio.jar -DgroupId=de.zbit -DartifactId=SysBio -Dversion=REVISION_NUMBER -Dpackaging=jar -->
<groupId>de.zbit</groupId>
<artifactId>SysBio</artifactId>
<version>1403</version>
</dependency>
</dependencies>
<!-- =================================================================== -->
<!-- Building -->
<!-- =================================================================== -->
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.3</version>
<configuration>
<source>${jdk.version}</source>
<target>${jdk.version}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<mainClass>org.sbml.io.Table2Model</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<mainClass>org.sbml.io.Table2Model</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
</project>