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_DKR_batch_process_open_images.ijm
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_DKR_batch_process_open_images.ijm
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// 20130729 ciclistadan
// perform simple functions on all open images
macro "go"{
function batchFunction();
if(isOpen("Results")){
selectWindow("Results");
run("Close");
}
if(isOpen("Log")){
selectWindow("Log");
run("Close");
}
// functions for non-image windows
// list = getList("window.titles");
// if (list.length==0)
// print("No non-image windows are open");
// else {
// print("Non-image windows:");
// for (i=0; i<list.length; i++)
// print(" "+list[i]);
// }
showStatus("Running Batch Process on Open Images");
if (nImages==0)
print("No images are open");
else {
setBatchMode(true);
for (i=1; i<=nImages; i++) {
selectImage(i);
batchFunction(
i);
showProgress(i/nImages);
}
}
showStatus("Batch Processing Complete");
}
function batchFunction(title){
// set to middle slice and pseudo-color RBG with autoscale
setSlice( floor(nSlices/2));
run("Make Composite");
Stack.setChannel(1);
run("Blue");
run("Enhance Contrast", "saturated=0.35");
Stack.setChannel(2);
run("Green");
run("Enhance Contrast", "saturated=0.35");
Stack.setChannel(3);
run("Red");
run("Enhance Contrast", "saturated=0.35");
}