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_DKR_Batch_DV_movies.txt
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_DKR_Batch_DV_movies.txt
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// created by Dan Rozelle 20091005
//used to quickly open each DV movie, and wait to do some simple manual function or paste another macro as a function
macro "_DKR_Batch_DV_Movies"{
//list auto functions here, adjust mode as necessary
function batchfunction();
mode="MANUAL"; //use "MANUAL" or "AUTO" or "BOTH"
if(nImages>0) exit ("close all images before proceeding");
dir1 = getDirectory("Choose source directory");
if (dir1=="")
exit("No directory available");
//get a list of all the files in this folder
preList = getFileList(dir1);
size=0;
//include only certain filetypes
filter="D3D.dv";
//count each '*filter*' files
for(place=0;place<preList.length;place++){
if(endsWith(preList[place],filter)){
size++;
}
}
//create a new array and populate with filtered images
list=newArray(size);
position=0;
for(place=0;place<preList.length;place++){
if(endsWith(preList[place],filter)){
list[position]=preList[place];
position++;
}
}
//starting with the first image, we increment through each image until we have done 6, or finish our list, whichever comes first
for(i=0; i<list.length; i++) {
//open a two color image in separate channel stacks
run("Bio-Formats Importer", "open="+dir1+list[i]+" view=Hyperstack stack_order=XYCZT merge_channels autoscale");
if(mode=="MANUAL" || mode=="BOTH"){
wait(100);
run("Install...", "install=C:\\ImageJ\\macros\\_DKR_AutoScaleBrightestSlice.txt");
waitForUser("click OK \nto proceed");
}
else if(mode=="AUTO" || mode=="BOTH"){
selectWindow(list[i]);
batchfunction();
}
//close the window after dialog box is closed
selectWindow(list[i]);
close();
}
}
function batchfunction()
{
}