The MetaMapR website is not available

[Candlelight-XYJ]

Dear Dr Dmitry Grapov

The website of MetaMapR http://dgrapov.github.io/MetaMapR/ is not available now, is there a new website to use it online?

Looking forward to your reply

Best regards,
Yujia

[benjaminlozanow]

I guessed they stopped supporting both the app and the R package.
What I found to be useful are these 2 things:

• A closed issue where a folder (app) is provided to be executed with the shiny package (Issues with Installing MetaMapR #4), didn't work for me though due to the following error:

Package not found, trying Bioconductor...
Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install

(I have always had trouble with the R version and some packages such as Bioconductor)

• There is a repository for the R package that might contain the functions you need. Implemeting them directly in R might be an option.
  https://github.com/dgrapov/metabomapr

I could't install it though, due to the following error:

Error: Failed to install 'metabomapr' from GitHub:
(converted from warning) package ‘ChemmineR’ is not available (for R version 3.6.3)

[oolonek]

@benjaminlozanow it means you need to install ChemmineR before. See here https://bioconductor.org/packages/devel/bioc/vignettes/ChemmineR/inst/doc/ChemmineR.html
Then you should be able to proceed with the metabomapr install.