ipyrad: interactive assembly and analysis of RAD-seq data sets

Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

Documentation

Full documentation is available here (http://ipyrad.readthedocs.io), where you will find installation instructions, example tutorials, and a full user guide.

Quick Install

ipyrad is available through the Python package installer conda with all dependencies included. If you have conda installed you can simply run:

conda install ipyrad -c conda-forge -c bioconda

If you do not have conda installed then you will enjoy our complete installation instructions.

Run ipyrad in Binder

Getting Help

Join the ipyrad gitter channel and ask a question, request a feature, or flame the developers:

License

GPLv3

Cite the Manuscript

Eaton DAR & Overcast I. "ipyrad: Interactive assembly and analysis of RADseq datasets." Bioinformatics (2020).

Contributors

• Deren Eaton
• Isaac Overcast