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deepTools is a suite of user-friendly tools for the visualization, quality control and normalization of data from high-throughput DNA sequencing experiments.
deepTools offers multiple methods for highly-customizable data visualization that immensely aid hypothesis generation and data interpretation. It also offers all the tools needed to create coverage files in standard bedGraph and bigWig file formats allowing various normalization procedures and comparisons between two files (for example, treatment and control). For a gallery of images that can be produced, see http://f1000.com/posters/browse/summary/1094053
This wiki accompanies the code of deepTools that is continuously being developed and hosted here at github.
| About deepTools | The Tools | Example Workflows | Technical Documentation | Galaxy |
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| [[About deepTools | About-deepTools]] | [[Tools Overview | Tools-details]] | [[Example Workflows |
| Introducing deepTools - why we built it and what it does | Detailed information about the individual tools | Step-by-step protocols of typical deepTools applications (for Galaxy and command line usage) | Information on technical requirements and how to install deepTools | General introduction into deepTools Galaxy |
If you are starting out with HTS data analysis, we recommend to get familiar with deepTools and the concepts of HTS data analysis that we are incorporating (--> About deepTools, Tools Overview).
To get an idea of the analyses that can be performed using deepTools, please see the exemplary workflows and visit our public web server: http://deeptools.ie-freiburg.mpg.de.
If you already know that deepTools is exactly what you have been looking for, the information about the Installation is probably for you.
- check our FAQ
- get in touch: [email protected]
