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Issues list

deprecated alias np.float from numpy when run hicDetectLoops to call loops
#908 opened Sep 11, 2024 by joey0214
1
hicPCA error: IndexError: list index out of range. raise ValueError('x and y must have length at least 2.') ValueError: x and y must have length at least 2.
#907 opened Aug 14, 2024 by shRDJr
hicMergeMatrixBins changes chromosome sizes
#906 opened Jul 22, 2024 by qolba
2
Clarification on Matrix Preprocessing for hicDifferentialTAD
#905 opened Jul 18, 2024 by GuanrongYan
Misleading Documentation for --tadDomains, -td Parameter in hicDifferentialTAD Tool
#904 opened Jul 18, 2024 by GuanrongYan
No module named 'hic2cool'
#903 opened Jul 17, 2024 by sanjin725
1
HiC merging bins
#900 opened Apr 25, 2024 by kunaltin2012
error in running hicDetectLoops
#899 opened Apr 5, 2024 by pangulu
About hicPCA error
#898 opened Mar 31, 2024 by HW-Superior
1
Can I use hicDifferentialTAD to analyze the TAD differences among three samples?
#897 opened Mar 24, 2024 by ZJU-Plumber
hicFindTADs difficult to distinguish different TADs
#896 opened Mar 20, 2024 by wangguiqian
3
hicCorrectMatrix correct
#895 opened Mar 19, 2024 by wangguiqian
problem with hicAggragateContacts
#894 opened Feb 26, 2024 by eferreA9
installation failure :: trained_models missing from requirements
#893 opened Feb 22, 2024 by EricDeveaud
hicPCA flip signs with rna-seq?
#892 opened Feb 17, 2024 by Naveen-Ahuja
1
LearningWithNoisyLabels was renamed to
#891 opened Feb 11, 2024 by bgruening
hicTrainTADClassifier raises ValueError
#890 opened Feb 11, 2024 by bgruening
1
--genome not working
#885 opened Jan 16, 2024 by robertferr
1
hicPCA " invalid literal" error message
#883 opened Dec 11, 2023 by erbon7
2
hicCompareMatrices between 2 cool format files
#882 opened Nov 29, 2023 by BenxiaHu
3
hicBuildMatrix hicCorrectMatrix ValueError: Axis limits cannot be NaN or Inf
#881 opened Nov 28, 2023 by lkiko
chicViewpoint hangs indefinitely when reference file is a BED file with (non-unique) gene names in 4th column
#880 opened Nov 27, 2023 by mtekman
chicViewpointBackgroundModel and np.int aliases deprecated in NumPy 1.20
#877 opened Nov 16, 2023 by amv33576
7
chicQualityControl fails with ImportError (conda version 3.7.2)
#876 opened Nov 8, 2023 by mtekman
2
There is no data for the region considered on the matrix.
#872 opened Oct 12, 2023 by ec233133
7
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