From 0807964f5a6fa2b604f88a06ec8eece3655ee2eb Mon Sep 17 00:00:00 2001
From: Matthew Evans <7916000+ml-evs@users.noreply.github.com>
Date: Mon, 19 Feb 2024 12:40:37 +0000
Subject: [PATCH] Force galvani and navani update in lockfile (#602)

* Force galvani and navani update in lockfile; important to generate with older Python

* Dial down default `WEB_CONCURRENCY`

* Also skip LFS smudge in CI

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
---
 .docker/server_dockerfile        |    5 +-
 .github/workflows/ci.yml         |    3 +
 .github/workflows/ci_release.yml |    3 +
 docker-compose.yml               |    2 +-
 pydatalab/Pipfile                |    4 +-
 pydatalab/Pipfile.lock           | 1209 +++++++++++++++---------------
 6 files changed, 624 insertions(+), 602 deletions(-)

diff --git a/.docker/server_dockerfile b/.docker/server_dockerfile
index f029fc16b..02d87a86f 100644
--- a/.docker/server_dockerfile
+++ b/.docker/server_dockerfile
@@ -2,6 +2,9 @@
 FROM python:3.10 as base
 SHELL ["/bin/bash", "--login", "-c"]
 
+# Useful for installing deps from git, preventing big downloads and bandwith quotas
+ENV GIT_LFS_SKIP_SMUDGE=1
+
 # Install system dependencies
 RUN apt update && apt install -y gnupg curl tree mdbtools && apt clean
 
@@ -32,7 +35,7 @@ RUN [ "pipenv", "run", "pip", "install", "gunicorn" ]
 COPY ./pydatalab/ ./
 
 # This will define the number of gunicorn workers
-ARG WEB_CONCURRENCY=16
+ARG WEB_CONCURRENCY=4
 ENV WEB_CONCURRENCY=${WEB_CONCURRENCY}
 
 ARG PORT=5001
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 9f2eca9ea..231b28aeb 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -8,6 +8,9 @@ on:
 
 env:
   FORCE_COLOR: true
+  # Need to set this to avoid pipenv syncing an entire LFS repo and failing with bandwidth quota (see
+  # https://github.com/the-grey-group/datalab/issues/603)
+  GIT_LFS_SKIP_SMUDGE: 1
 
 concurrency:
   group: ${{ github.head_ref || github.run_id }}
diff --git a/.github/workflows/ci_release.yml b/.github/workflows/ci_release.yml
index 183da1ec7..01330f0d2 100644
--- a/.github/workflows/ci_release.yml
+++ b/.github/workflows/ci_release.yml
@@ -9,6 +9,9 @@ env:
   PUBLISH_UPDATE_BRANCH: main
   GIT_USER_NAME: "Greymon (bot)"
   GIT_USER_EMAIL: "bot-grey-group@ml-evs.science"
+  # Need to set this to avoid pipenv syncing an entire LFS repo and failing with bandwidth quota (see
+  # https://github.com/the-grey-group/datalab/issues/603)
+  GIT_LFS_SKIP_SMUDGE: 1
 
 jobs:
   publish:
diff --git a/docker-compose.yml b/docker-compose.yml
index 0f545723e..e37cfccb4 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -35,7 +35,7 @@ services:
       dockerfile: .docker/server_dockerfile
       target: production
       args:
-        - WEB_CONCURRENCY=16
+        - WEB_CONCURRENCY=4
     depends_on:
       - database
     volumes:
diff --git a/pydatalab/Pipfile b/pydatalab/Pipfile
index 4cd02922d..4e27dfff3 100644
--- a/pydatalab/Pipfile
+++ b/pydatalab/Pipfile
@@ -16,7 +16,6 @@ pandas = "*"
 scipy = "*"
 matplotlib = "*"
 pymongo = "*"
-galvani = "*"
 openpyxl = "*"
 nmrglue = "*"
 python-dotenv = "*"
@@ -28,7 +27,8 @@ flask-compress = "*"
 pillow = "*"
 openai = "~= 0.28"
 tiktoken = "*"
-navani = {git = "git+https://github.com/the-grey-group/navani.git@v0.1.5-rc1"}
+galvani = {git = "git+https://github.com/echemdata/galvani.git@1fd9f84"}
+navani = {git = "git+https://github.com/the-grey-group/navani.git@v0.1.5-rc2"}
 python-dateutil = "*"
 pybaselines = "*"
 rosettasciio = "*"
diff --git a/pydatalab/Pipfile.lock b/pydatalab/Pipfile.lock
index 76601c38c..ec72713db 100644
--- a/pydatalab/Pipfile.lock
+++ b/pydatalab/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "9ed1c0987ef49ac642dcd86177783738177cc1b508b5f18b773976c02bedb3b2"
+            "sha256": "6d24461d052338f9fb60a41b5e2e489ccefb7194d6558f6ed5aa55c2627b0f8a"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -18,86 +18,85 @@
     "default": {
         "aiohttp": {
             "hashes": [
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-                "sha256:07205ae0015e05c78b3288c1517afa000823a678a41594b3fdc870878d645305",
-                "sha256:07be2be7071723c3509ab5c08108d3a74f2181d4964e869f2504aaab68f8d3e8",
-                "sha256:0b500c5ad9c07639d48615a770f49618130e61be36608fc9bc2d9bae31732b8f",
-                "sha256:0e4ee4df741670560b1bc393672035418bf9063718fee05e1796bf867e995fad",
-                "sha256:103daf41ff3b53ba6fa09ad410793e2e76c9d0269151812e5aba4b9dd674a7e8",
-                "sha256:114da29f39eccd71b93a0fcacff178749a5c3559009b4a4498c2c173a6d74dff",
-                "sha256:122468f6fee5fcbe67cb07014a08c195b3d4c41ff71e7b5160a7bcc41d585a5f",
-                "sha256:1543e7fb00214fb4ccead42e6a7d86f3bb7c34751ec7c605cca7388e525fd0b4",
-                "sha256:158564d0d1020e0d3fe919a81d97aadad35171e13e7b425b244ad4337fc6793a",
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@@ -265,11 +264,11 @@
         },
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@@ -493,41 +492,41 @@
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@@ -542,19 +541,19 @@
                 "array"
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@@ -625,51 +624,51 @@
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@@ -756,20 +755,16 @@
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@@ -1346,12 +1357,12 @@
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@@ -1570,10 +1581,10 @@
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@@ -1828,46 +1839,46 @@
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@@ -2283,11 +2294,11 @@
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@@ -2323,69 +2334,69 @@
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