PEPATAC is a pipeline for ATAC-seq data. For more information see: http://pepatac.databio.org/
Develop docs with:
mkdocs serve -f mkdocs.yml
Build and deploy with:
mkdocs build -f mkdocs.yml -d $CODEBASE/code.databio.org/pepatac/
Pull requests welcome. Active development should occur in a development or feature branch.
- Jason Smith, [email protected]
- Nathan Sheffield, [email protected]
- Jin Xu, [email protected]
- Ryan Corces, [email protected]
- Vince Reuter, [email protected]
- Others... (add your name)
If you find PEPATAC useful in your research, please cite:
Jason P. Smith, M. Ryan Corces, Jin Xu, Vincent P. Reuter, Howard Y. Chang, and Nathan C. Sheffield. PEPATAC: An optimized ATAC-seq pipeline with serial alignments. bioRxiv (2021). DOI: 10.1101/2020.10.21.347054