data-exp-lab · chrishavlin · Jul 24, 2023 · Jul 24, 2023 · Jul 24, 2023 · Jul 24, 2023
diff --git a/.flake8 b/.flake8
@@ -0,0 +1,10 @@
+[flake8]
+max-line-length = 88
+exclude = docs,
+    */__init__.py,
+ignore = E203,
+    E266,
+    E302,
+    E501,
+    E741,
+    W503,
diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml
@@ -1,6 +1,6 @@
 name: Run tests
 
-on: 
+on:
   pull_request:
     paths:
        - '**.py'
@@ -20,15 +20,14 @@ jobs:
       uses: actions/setup-python@v2
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Install graphviz 
+    - name: Install graphviz
       run: sudo apt-get install graphviz
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        python -m pip install -r requirements_dev.txt
     - name: Setup inheritance_explorer
       run: |
-        python -m pip install -e .
+        python -m pip install -e .[dev]
     - name: Run Tests
       run: pytest --cov=./ --cov-report=xml:coverage/coverage.xml
 

diff --git a/.github/workflows/style-checks.yml b/.github/workflows/style-checks.yml
@@ -1,10 +1,9 @@
 name: Style Checks
-on: 
+on:
   pull_request:
     paths:
        - '**.py'
        - '**style-checks.yml'
-       - 'tests/lint_requirements.txt'
 
 jobs:
   flake8:
@@ -18,7 +17,7 @@ jobs:
         python-version: 3.9
     - name: install
       id: install
-      run : pip install -r tests/lint_requirements.txt
+      run : pip install .[lint]
 
     - name: check
       id: flake8
@@ -37,7 +36,7 @@ jobs:
         python-version: 3.9
     - name: install
       id: install
-      run : pip install -r tests/lint_requirements.txt
+      run : pip install .[lint]
 
     - name: check
       id: black
@@ -56,7 +55,7 @@ jobs:
         python-version: 3.9
     - name: install
       id: install
-      run : pip install -r tests/lint_requirements.txt
+      run : pip install .[lint]
 
     - name: check
       id: isort

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,14 +1,14 @@
 repos:
 -   repo: https://github.com/ambv/black
-    rev: 22.8.0  # keep in sync with tests/lint_requirements.txt
+    rev: 22.8.0  # keep in sync with pyproject.toml
     hooks:
     - id: black
       language_version: python3
 -   repo: https://github.com/timothycrosley/isort
-    rev: '5.12.0'  # keep in sync with tests/lint_requirements.txt
+    rev: '5.12.0'  # keep in sync with pyproject.toml
     hooks:
     -   id: isort
 -   repo: https://github.com/PyCQA/flake8
-    rev: '6.0.0' # keep in sync with tests/lint_requirements.txt
+    rev: '6.0.0' # keep in sync with pyproject.toml
     hooks:
     -   id: flake8
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -11,8 +11,11 @@ build:
   tools:
     python: "3.10"
 
-# Optionally declare the Python requirements required to build your docs
+# installation, will result in pip install .[docs, dev]
 python:
-   install:
-   - requirements: requirements.txt
-   - requirements: requirements_dev.txt
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - docs
+        - dev
diff --git a/tests/__init__.py → inheritance_explorer/tests/__init__.py b/tests/__init__.py → inheritance_explorer/tests/__init__.py
diff --git a/tests/test_cli.py → inheritance_explorer/tests/test_cli.py b/tests/test_cli.py → inheritance_explorer/tests/test_cli.py
diff --git a/tests/test_inheritance_explorer.py → ...plorer/tests/test_inheritance_explorer.py b/tests/test_inheritance_explorer.py → ...plorer/tests/test_inheritance_explorer.py
diff --git a/tests/test_similarity.py → ...ritance_explorer/tests/test_similarity.py b/tests/test_similarity.py → ...ritance_explorer/tests/test_similarity.py
diff --git a/tests/test_utilities.py → inheritance_explorer/tests/test_utilities.py b/tests/test_utilities.py → inheritance_explorer/tests/test_utilities.py
diff --git a/tests/test_widgets.py → inheritance_explorer/tests/test_widgets.py b/tests/test_widgets.py → inheritance_explorer/tests/test_widgets.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -6,3 +6,69 @@ target-version = ['py37']
 profile = "black"
 combine_as_imports = true
 skip =  ["venv", "benchmarks"]
+
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "inheritance_explorer"
+version = "0.1.2"
+description = "A tool for exploring complex inheritance patters in python code"
+readme = "README.rst"
+requires-python = ">=3.8"
+authors = [
+    { name="Chris Havlin", email="[email protected]" },
+]
+classifiers=[
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "License :: OSI Approved :: MIT License",
+    "Natural Language :: English",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+]
+dependencies = ['pydot',
+                'pycode_similar',
+                'numpy',
+                'matplotlib',
+                'pyvis',
+                'networkx',
+                'click',
+                'ipywidgets',
+                'jupyterlab'
+                ]
+license={file = "LICENSE"}
+
+[tool.setuptools]
+include-package-data = true
+
+
+[project.scripts]
+inheritance_explorer = "inheritance_explorer.cli:map_class"
+
+[project.urls]
+"Homepage" = "https://github.com/data-exp-lab/inheritance_explorer"
+"Bug Tracker" = "https://github.com/data-exp-lab/inheritance_explorer/issues"
+
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=3",
+    "pytest-cov",
+    "yt>4.1",
+    "pre-commit",
+]
+docs = [
+    "Sphinx==1.8.5",
+    "jinja2<3.1.0",
+    "nbsphinx",
+]
+lint = [
+    "black==22.8.0",
+    "isort==5.12.0",
+    "flake8==6.0.0"
+]
+
diff --git a/requirements.txt b/requirements.txt
diff --git a/requirements_dev.txt b/requirements_dev.txt
diff --git a/setup.cfg b/setup.cfg
diff --git a/setup.py b/setup.py
diff --git a/tests/lint_requirements.txt b/tests/lint_requirements.txt