diff --git a/R/data_algae.R b/R/data_algae.R index 432caaa..46dec6f 100644 --- a/R/data_algae.R +++ b/R/data_algae.R @@ -31,9 +31,9 @@ #' - `samplingProtocolVersion`: The NEON document number and version where detailed information regarding the sampling method used is available; format NEON.DOC.######vX. #' - `substratumSizeClass`: Size class of the substratum sampled. #' - `samplerType`: Type of sampler used to collect the sample. -#' - `phytoDepth1`: First phytoplankton sample depth at sampling location -#' - `phytoDepth2`: Second phytoplankton sample depth at sampling location -#' - `phytoDepth3`: Third phytoplankton sample depth at sampling location +#' - `phytoDepth1`: First phytoplankton sample depth (meter) at sampling location +#' - `phytoDepth2`: Second phytoplankton sample depth (meter) at sampling location +#' - `phytoDepth3`: Third phytoplankton sample depth (meter) at sampling location #' - `latitude`: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `longitude`: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `elevation`: Elevation (in meters) above sea level. diff --git a/R/data_fish.R b/R/data_fish.R index 4c1ed96..a1e84b3 100644 --- a/R/data_fish.R +++ b/R/data_fish.R @@ -11,6 +11,7 @@ #' - `location_id`: Location id. #' - `siteID`: NEON site code. #' - `plotID`: Plot identifier (NEON site code_XXX). +#' - `pointID`: Sampling point identifier. #' - `unique_sample_id`: Identity of unique samples, usually it has location and date information. #' - `observation_datetime`: Observation date and time. #' - `taxon_id`: Accepted species code, based on one or more sources. diff --git a/R/data_macroinvertebrate.R b/R/data_macroinvertebrate.R index 71a8261..46bcd96 100644 --- a/R/data_macroinvertebrate.R +++ b/R/data_macroinvertebrate.R @@ -25,9 +25,9 @@ #' - `substratumSizeClass`: Size class of the substratum sampled. #' - `neon_sample_id`: NEON sample ID. #' - `remarks`: Remarks of record. -#' - `ponarDepth`: Depth of petite ponar sample. -#' - `snagLength`: Length of snag sampled. -#' - `snagDiameter`: Diameter of snag sampled. +#' - `ponarDepth`: Depth (meter) of petite ponar sample. +#' - `snagLength`: Length (centimeter) of snag sampled. +#' - `snagDiameter`: Diameter (centimeter) of snag sampled. #' - `latitude`: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `longitude`: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `elevation`: Elevation (in meters) above sea level. diff --git a/R/data_zooplankton.R b/R/data_zooplankton.R index 0c5e63e..87a525a 100644 --- a/R/data_zooplankton.R +++ b/R/data_zooplankton.R @@ -23,7 +23,7 @@ #' - `unit`: Unit of the values in the `value` column. #' - `release`: Version of data release by NEON. #' - `samplerType`: Type of sampler used to collect the sample. -#' - `towsTrapsVolumn`: Sample volume collected for zooplankton. +#' - `towsTrapsVolumn`: Sample volume (liter) collected for zooplankton. #' - `latitude`: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `longitude`: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. #' - `elevation`: Elevation (in meters) above sea level. diff --git a/R/neon_sites.R b/R/neon_sites.R index 85f4b17..1ce1096 100644 --- a/R/neon_sites.R +++ b/R/neon_sites.R @@ -9,10 +9,10 @@ #' - `Domain Name`: Full domain name. #' - `domainID`: Unique identifier of the NEON domain. #' - `State`: The state name of the site locates in. -#' - `Latitude`: Latitide of the site. -#' - `Longitude`: Longitude of the site. +#' - `Latitude`: Latitide of the site (in decimal degrees, WGS84). +#' - `Longitude`: Longitude of the site (in decimal degrees, WGS84). #' - `Site Type`: The type of the site (e.g. Core Terrestrial). -#' - `Site Subtype`: Second level site type. -#' - `Site Host`: Host of the site. +#' - `Site Subtype`: Second level site type, for aquatic sites only (e.g. Lake, Wadeable Stream, Non-wadeable Rive). +#' - `Site Host`: Host organization of the site. #' "neon_sites" diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 45c2ca9..6b18243 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,5 +2,5 @@ pandoc: 2.11.4 pkgdown: 1.6.1 pkgdown_sha: ~ articles: {} -last_built: 2021-03-29T19:05Z +last_built: 2021-03-30T03:47Z diff --git a/docs/reference/data_algae.html b/docs/reference/data_algae.html index 3bf769e..3ecde72 100644 --- a/docs/reference/data_algae.html +++ b/docs/reference/data_algae.html @@ -138,9 +138,9 @@

Format

samplingProtocolVersion: The NEON document number and version where detailed information regarding the sampling method used is available; format NEON.DOC.######vX.

  • substratumSizeClass: Size class of the substratum sampled.

  • samplerType: Type of sampler used to collect the sample.

  • -
  • phytoDepth1: First phytoplankton sample depth at sampling location

  • -
  • phytoDepth2: Second phytoplankton sample depth at sampling location

  • -
  • phytoDepth3: Third phytoplankton sample depth at sampling location

  • +
  • phytoDepth1: First phytoplankton sample depth (meter) at sampling location

  • +
  • phytoDepth2: Second phytoplankton sample depth (meter) at sampling location

  • +
  • phytoDepth3: Third phytoplankton sample depth (meter) at sampling location

  • latitude: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • longitude: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • elevation: Elevation (in meters) above sea level.

  • diff --git a/docs/reference/data_fish.html b/docs/reference/data_fish.html index 89f58e2..eddab02 100644 --- a/docs/reference/data_fish.html +++ b/docs/reference/data_fish.html @@ -125,6 +125,7 @@

    Format

    location_id: Location id.

  • siteID: NEON site code.

  • plotID: Plot identifier (NEON site code_XXX).

  • +
  • pointID: Sampling point identifier.

  • unique_sample_id: Identity of unique samples, usually it has location and date information.

  • observation_datetime: Observation date and time.

  • taxon_id: Accepted species code, based on one or more sources.

  • diff --git a/docs/reference/data_macroinvertebrate.html b/docs/reference/data_macroinvertebrate.html index 82adcf1..cb109ec 100644 --- a/docs/reference/data_macroinvertebrate.html +++ b/docs/reference/data_macroinvertebrate.html @@ -138,9 +138,9 @@

    Format

    substratumSizeClass: Size class of the substratum sampled.

  • neon_sample_id: NEON sample ID.

  • remarks: Remarks of record.

  • -
  • ponarDepth: Depth of petite ponar sample.

  • -
  • snagLength: Length of snag sampled.

  • -
  • snagDiameter: Diameter of snag sampled.

  • +
  • ponarDepth: Depth (meter) of petite ponar sample.

  • +
  • snagLength: Length (centimeter) of snag sampled.

  • +
  • snagDiameter: Diameter (centimeter) of snag sampled.

  • latitude: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • longitude: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • elevation: Elevation (in meters) above sea level.

  • diff --git a/docs/reference/data_zooplankton.html b/docs/reference/data_zooplankton.html index e4dccc0..f7b8270 100644 --- a/docs/reference/data_zooplankton.html +++ b/docs/reference/data_zooplankton.html @@ -131,7 +131,7 @@

    Format

    unit: Unit of the values in the value column.

  • release: Version of data release by NEON.

  • samplerType: Type of sampler used to collect the sample.

  • -
  • towsTrapsVolumn: Sample volume collected for zooplankton.

  • +
  • towsTrapsVolumn: Sample volume (liter) collected for zooplankton.

  • latitude: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • longitude: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area.

  • elevation: Elevation (in meters) above sea level.

  • diff --git a/docs/reference/neon_sites.html b/docs/reference/neon_sites.html index 282b0cd..adc8dc6 100644 --- a/docs/reference/neon_sites.html +++ b/docs/reference/neon_sites.html @@ -123,11 +123,11 @@

    Format

    Domain Name: Full domain name.

  • domainID: Unique identifier of the NEON domain.

  • State: The state name of the site locates in.

  • -
  • Latitude: Latitide of the site.

  • -
  • Longitude: Longitude of the site.

  • +
  • Latitude: Latitide of the site (in decimal degrees, WGS84).

  • +
  • Longitude: Longitude of the site (in decimal degrees, WGS84).

  • Site Type: The type of the site (e.g. Core Terrestrial).

  • -
  • Site Subtype: Second level site type.

  • -
  • Site Host: Host of the site.

  • +
  • Site Subtype: Second level site type, for aquatic sites only (e.g. Lake, Wadeable Stream, Non-wadeable Rive).

  • +
  • Site Host: Host organization of the site.

  • diff --git a/man/data_algae.Rd b/man/data_algae.Rd index f79d055..8d58476 100644 --- a/man/data_algae.Rd +++ b/man/data_algae.Rd @@ -27,9 +27,9 @@ of the lowest level taxonomic rank that can be determined. \item \code{samplingProtocolVersion}: The NEON document number and version where detailed information regarding the sampling method used is available; format NEON.DOC.######vX. \item \code{substratumSizeClass}: Size class of the substratum sampled. \item \code{samplerType}: Type of sampler used to collect the sample. -\item \code{phytoDepth1}: First phytoplankton sample depth at sampling location -\item \code{phytoDepth2}: Second phytoplankton sample depth at sampling location -\item \code{phytoDepth3}: Third phytoplankton sample depth at sampling location +\item \code{phytoDepth1}: First phytoplankton sample depth (meter) at sampling location +\item \code{phytoDepth2}: Second phytoplankton sample depth (meter) at sampling location +\item \code{phytoDepth3}: Third phytoplankton sample depth (meter) at sampling location \item \code{latitude}: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{longitude}: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{elevation}: Elevation (in meters) above sea level. diff --git a/man/data_fish.Rd b/man/data_fish.Rd index 291e176..1b62af1 100644 --- a/man/data_fish.Rd +++ b/man/data_fish.Rd @@ -10,6 +10,7 @@ A data frame (also a tibble) with the following columns: \item \code{location_id}: Location id. \item \code{siteID}: NEON site code. \item \code{plotID}: Plot identifier (NEON site code_XXX). +\item \code{pointID}: Sampling point identifier. \item \code{unique_sample_id}: Identity of unique samples, usually it has location and date information. \item \code{observation_datetime}: Observation date and time. \item \code{taxon_id}: Accepted species code, based on one or more sources. diff --git a/man/data_macroinvertebrate.Rd b/man/data_macroinvertebrate.Rd index 946f2d0..f0e9d1a 100644 --- a/man/data_macroinvertebrate.Rd +++ b/man/data_macroinvertebrate.Rd @@ -27,9 +27,9 @@ of the lowest level taxonomic rank that can be determined. \item \code{substratumSizeClass}: Size class of the substratum sampled. \item \code{neon_sample_id}: NEON sample ID. \item \code{remarks}: Remarks of record. -\item \code{ponarDepth}: Depth of petite ponar sample. -\item \code{snagLength}: Length of snag sampled. -\item \code{snagDiameter}: Diameter of snag sampled. +\item \code{ponarDepth}: Depth (meter) of petite ponar sample. +\item \code{snagLength}: Length (centimeter) of snag sampled. +\item \code{snagDiameter}: Diameter (centimeter) of snag sampled. \item \code{latitude}: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{longitude}: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{elevation}: Elevation (in meters) above sea level. diff --git a/man/data_zooplankton.Rd b/man/data_zooplankton.Rd index cd4fa7a..c2d3237 100644 --- a/man/data_zooplankton.Rd +++ b/man/data_zooplankton.Rd @@ -20,7 +20,7 @@ of the lowest level taxonomic rank that can be determined. \item \code{unit}: Unit of the values in the \code{value} column. \item \code{release}: Version of data release by NEON. \item \code{samplerType}: Type of sampler used to collect the sample. -\item \code{towsTrapsVolumn}: Sample volume collected for zooplankton. +\item \code{towsTrapsVolumn}: Sample volume (liter) collected for zooplankton. \item \code{latitude}: The geographic latitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{longitude}: The geographic longitude (in decimal degrees, WGS84) of the geographic center of the reference area. \item \code{elevation}: Elevation (in meters) above sea level. diff --git a/man/neon_sites.Rd b/man/neon_sites.Rd index 8d7ded6..2384664 100644 --- a/man/neon_sites.Rd +++ b/man/neon_sites.Rd @@ -12,11 +12,11 @@ A data frame with the following columns: \item \verb{Domain Name}: Full domain name. \item \code{domainID}: Unique identifier of the NEON domain. \item \code{State}: The state name of the site locates in. -\item \code{Latitude}: Latitide of the site. -\item \code{Longitude}: Longitude of the site. +\item \code{Latitude}: Latitide of the site (in decimal degrees, WGS84). +\item \code{Longitude}: Longitude of the site (in decimal degrees, WGS84). \item \verb{Site Type}: The type of the site (e.g. Core Terrestrial). -\item \verb{Site Subtype}: Second level site type. -\item \verb{Site Host}: Host of the site. +\item \verb{Site Subtype}: Second level site type, for aquatic sites only (e.g. Lake, Wadeable Stream, Non-wadeable Rive). +\item \verb{Site Host}: Host organization of the site. } } \usage{