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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(autoplot,permutation_test)
S3method(plot,PF)
S3method(print,permutation_test)
export(age_range_medians)
export(all_potential_biomarkers)
export(autoplot)
export(build_rds_path)
export(build_score_vals)
export(clean_numeric)
export(collect_permutation_test_stats)
export(compile_biomarker_group_list)
export(compile_biomarker_groups_table)
export(compute_confus_matrix)
export(compute_prob_correct)
export(compute_prob_correct2)
export(compute_prob_dist)
export(compute_prob_dist2)
export(compute_prob_scores)
export(compute_score_levels)
export(construct_biomarker_events_table)
export(create_scid_domains)
export(define_cases_and_controls)
export(event_order_heatmap)
export(extract_figs_from_pickle)
export(extract_permuted_likelihoods)
export(extract_results_from_pickle)
export(extract_results_from_pickles)
export(format_likelihoods)
export(get_biomarker_events_table)
export(get_levels)
export(get_observed_permutation_test_stat)
export(get_visit1)
export(graph_CGG_repeats)
export(graph_likelihoods_v2)
export(graph_stage_by_age)
export(install_pySuStaIn)
export(make_biomarkers_table)
export(make_demographics_table)
export(missing_pattern_by_ID)
export(missingness_reasons.factor)
export(missingness_reasons.numeric)
export(model_dists)
export(permutation_test)
export(plot_CVIC)
export(plot_compact_pvd)
export(plot_cv_loglik)
export(plot_heatmap)
export(plot_permutation_results)
export(plot_positional_var)
export(print_PVDs)
export(pvd_lineplot)
export(remove_missingness_reason_vars)
export(replace_missing_codes)
export(replace_missing_codes_with_NAs)
export(run_OSA)
export(run_OSA_permuted)
export(run_and_save_OSA)
export(run_app)
export(scid_vars_for_table1)
export(stratified_formula)
export(table1a)
export(table_subtype_by_demographics)
export(write_permuted_test_stats)
import(shiny)
importFrom(arsenal,tableby)
importFrom(colorspace,qualitative_hcl)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,between)
importFrom(dplyr,count)
importFrom(dplyr,filter)
importFrom(dplyr,if_all)
importFrom(dplyr,if_any)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,tibble)
importFrom(forcats,fct_na_level_to_value)
importFrom(forcats,fct_other)
importFrom(forcats,fct_relevel)
importFrom(fs,path)
importFrom(ggplot2,aes)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggtext,element_markdown)
importFrom(glue,glue)
importFrom(golem,activate_js)
importFrom(golem,add_resource_path)
importFrom(golem,bundle_resources)
importFrom(golem,favicon)
importFrom(golem,with_golem_options)
importFrom(magrittr,not)
importFrom(magrittr,set_names)
importFrom(plotly,ggplotly)
importFrom(rcartocolor,carto_pal)
importFrom(readxl,read_excel)
importFrom(reticulate,import)
importFrom(reticulate,iterate)
importFrom(reticulate,py_load_object)
importFrom(shiny,HTML)
importFrom(shiny,column)
importFrom(shiny,shinyApp)
importFrom(shiny,tagAppendAttributes)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(splitTools,create_folds)
importFrom(table1,table1)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyselect,contains)