This README describes how to load the datasets for the neurofinder analysis benchmarking challenge. You probably received this document when downloading a dataset.
Training datasets are provided with ground truth labeled regions for identified neurons, and testing datasets are provided without ground truth. Each downloadable dataset includes metadata (as JSON), images (as TIFF), and coordinates of identified neurons, also known as ROIs (as JSON). Datasets are around 1 GB zipped and a few GBs unzipped. Visit the neurofinder repository for current download links for all datasets.
Along with the data itself, each download includes example loading scripts in python, matlab, and javascript, the source code of which are in this reposistory.
To contribute example loading scripts for other languages, just submit a pull request! If there are problems with the loading scripts, create a GitHub issue.