-
Notifications
You must be signed in to change notification settings - Fork 1
/
ChriSTORM.ijm
executable file
·91 lines (57 loc) · 10 KB
/
ChriSTORM.ijm
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
// ChriSTORM toolset by Christophe Leterrier
// Icons are Fugue Icons (C) 2013 Yusuke Kamiyamane. All rights reserved.
// 15-01-19
// Tool 14
macro "Batch NSTORM into ThunderSTORM Action Tool - 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"{
run("Batch NS Into TS");
}
// Tool 15
macro "Batch Process ThunderSTORM Locs Action Tool - C000D7fCfffD44D45D55D56D66D67D77D78D88D89D99D9aDd9Ce55De7C9aaD2cD2fDdcDdfCfffD31D32D33D34D35D46D47D57D58D68D69D79D7aD8aD8bDcdCeeeDb0Dc1Dd2Cc33Df8CeffD41CdeeD62D72D73D83D84D94D95Da5Da6Db6Db7CbccD21D22D30D40D50D60D70D80D90Da0Db1Dc2CeffD42D43D51D53D54D64D65D75D76D86D87D97D98Da8Da9C998DdbCeebD9bDaaCabbD27D28CeffD52D61D63D71D74D81D85D91D96Da7Db8Dc4Dc5Dc6Dc7Ccb4D8dD9cDabDbaCeedD7dCdddDeaC977Dd8Cfe7D9dDacDbbDcaCaaaDc9Ca94D9eDadDbcDcbC9aaD2dDa3Db3Dc3Dd3DddCdeeD82D92D93Da4Db4Db5CbccD23D24D25Da1Dd4Dd5Ccb8D7eCffdD8eCcddD20C788D3fD4fD5fD6fDafDbfDcfCddbDbdC977De9C899D2eDdeCeebD8cCaccD26Dd6CabbD29Ca99Dd7CdddDc8C666DdaCebbDf9CabbD2aD2bDa2CddbDaeDb9DccC662D8fCf88De8C776D9fCfbbDf7"{
run("Batch Process Locs");
}
// Tool 16
macro "Transform ThunderSTORM Locs Action Tool - C24aD07D08Df7Df8CeeeD1aD1bD1cD1dD1fD28D29D38D39D48D49D58D59D68D69D78D79D88D89D98D99Da8Da9Db8Db9Dc8Dc9Dd8Dd9DeaDebDecDedDefC999Dd2De2C46cD03Df3CfffD0fD17D18D19D27D36D37D46D47D56D57D66D67D76D77D86D87D96D97Da6Da7Db6Db7Dc6Dc7Dd7De7De8De9DffCcdfD00Df0C35dD0cD2cD3cDccDdcDfcCeeeD2dD2fD3aD3dD3fD4aD4bD4dD4fD5aD5bD5cD5dD5fD6aD6bD6cD6dD6fD7aD7bD7cD7dD7fD8aD8bD8cD8dD8fD9aD9bD9cD9dD9fDaaDabDacDadDafDbaDbbDbdDbfDcaDcdDcfDddDdfC68dD44Db4C24bD0aDfaCcccD81D91C67dD4cDbcC46eD1eD2eD3eD4eD5eD6eD7eD8eD9eDaeDbeDceDdeDeeC79eD10De0C24aD06Df6CbbbD42D52D62C67cD35Dc5C35eD0dDfdC79eD01Df1C25cD0bD2bDdbDfbCcccD61D71C68eD20D30D40D50D60D70D80D90Da0Db0Dc0Dd0C24bD09Df9CaaaD72D82D92C67cD0eDfeC35cD04D24D34Dc4Dd4Df4CabdDe1C35bD05D25Dd5Df5CbbbD12D22D32C57dD02Df2CdddD41D51CaaaDa2Db2Dc2C57cD26Dd6CcccDa1Db1C57dD3bDcbCccdDd1C57cD2aDdaCccdDc1CdddD21D31CbceD11" {
run("Transform TS");
}
// Tool 17
macro "Rotate ThunderSTORM Locs Action Tool - C37aD7eD8eCbdfD95C69cD1eC1aeD9dCdefD37C9bdD5eDaeC48cD19D69CcefD24D25C5beD29C49dDdaCeffD32CabdD2eC28cDadCbdfD44C5aeD84C3aeD3aCeefD16D17C8cfD73C49cD6bD9bCdefD47D56C7beDd5C3bfD2bD5bDcbCfffD41C9cfD54C37bD1cD3cCbdfD33D36C7adD6aC2aeD4bCeefD4eDbeDebC8cfD91C58bD6eD9eCcefD35D51C6beD71C4aeDc9CeffD15D23Db1De4CaceD46De5C48bD1aD4dD5aDaaCcefDc2C6beDc6C2afDbbC9dfD72D82Db3Dc4C59dDb7De7CcefD26C7ceDd6C5beD4aCbdeDa6C37bD1dD2dDbdC69cDe9C0bfD8dCdefD27C9bdDeaC48cD28D38D48D58D68Db8De8C6beD81Db2Dc3C5adDa5Db6CaceD79D9aDa9C38bDdbCcdfD65Dd3C6aeD74D94Dc7Dc8Dd4C3aeDcaC8dfD92C49cD5dC7ceDd7C4beD2aDabCadfD42C37bD1bD7bD8bDccC7adDe6C2bfD5cD6cD9cDbcC9cfD61CcefD43C7beDb5C5beDbaCbceDcdDdcC3bfD7cD8cC7cfDa2Db4C4bfD3bCadfD53C1afDacC59dDb9C5aeDd9C7beD64Dc5C9dfD52C7adD18D78C8cfD83D93Da3C6beD59C5aeD39D49C3bfD4cC7bfDa4CadfD45Da1C7acD3dC1bfD7dCdffD34C9ceD55C3beD6dC9dfD63C9dfD62C6beDd8C4cfD2c" {
run("Rotate TS");
}
// Tool 18
macro "Import ThunderSTORM Locs Action Tool - C368DcfCfffD0eD44D45D55D56D66D67D77D78D88D89D99D9aDaaDfeCdddD1fDefC9aaD2dDa3Db3Dc3Dd3CeffD41CeffD42D43D51D53D54D64D65D75D76D86D87D97D98Da8Da9Db9DbaDc8C49dDdaCeeeDb0Dc1Dd2CbccD21D22D30D40D50D60D70D80D90Da0Db1Dc2CfffD31D32D33D34D35D46D47D57D58D68D69D79D7aD8aC689DdfCdeeD62D72D73D83D84D94D95Da5Da6Db6Db7C9acDeeC59dDebCeffD52D61D63D71D74D81D85D91D96Da7Db8Dc4Dc5Dc6Dc7C9efD9cDdbC48cDedCdeeD82D92D93Da4Db4Db5CabbD29C899D2eCeeeD0fD1eDffC788D3fD4fD5fD6fD7fD8fD9fDafDbfCbccD23D24D25Da1Dd4Dd5C7beD8bCaceDfdC48cD9dDadDbdDcdCcddD20C9aaD2cC59dD9bDabDbbDcbCaccD26Dd6C5dfDbcDccDdcC49cD8cDfcCabbD27D28Dd7Dd8C8acDd9C6dfDacCbdeDfbC26aDdeC3cfDddC999D2fC8ceDc9CabbD2aD2bDa2C7adD8dC7dfDecCbdfDeaC37bDceC5aeDca"{
run("Import results");
}
// Tool 19
macro "Run ThunderSTORM Action Tool - Cda2D6cDbaC8adD02C57aDadDbdDcdDddDeaDebDecCec7D8aDabCbcdD01De1C7adD07D61Ceb5D7cD95C9beD12D22D32D42D52D62D72D82D92Da2Db2Dc2Dd2C68bD2dD3dDe3Cec8D7aDc9CfedD4fD5fC89cDd1Ceb4D5eD6dD9bC9bdD11C67aD8dCec8D99Db9CfedDbbC7adD03D04D05D06D13D21D23D31D33D41D43D51D53D63D73D83D93Da3Db3Dc3Dd3Ced5D55D65C79cD91Da1Cfe9D77CfffD5cDdaCfdaD9cCda3D6bD89D8cC57aD9dCfd6D3aD48CdedDc5Cec5D75D85C69cD0aD0bD0cDb1Dc1Cfe8D46D59D66CffeD37Dd9CedaDb6Cec4D47Da5C58bDe6Cfd8D6aD76D86CfffDb8Dc8Cec6D2aD4aD5aD69C79dD08D09D71D81Ced9D2bD38D98DcaCfffDa8CfecD29D45D4eCb94D5dD7dCfd7D7bD87D96Cec5D97Da6C68cD1dDe2Ced8D4bD78C8acD0dDedCeb5DaaC57bDe7De8De9Cec8D79Da9CeffDb7Dc7Cfd5D67Cfe9D49D57D58CfebD6eCeb3D88Cfd7D56CeefDc6Ceb5D8bD9aDb5Cfd9D3bCedaDa7Cec4D39D68C68bD4dDe4De5Ced8D5b"{
run("Run analysis");
}
// Tool 20
macro "Generate Reconstructions Action Tool - C577DacDcaC7cfD37C69bD44D62C9a7D2cD4cCeffD1aD1dD9aD9dDb8DbbDd6Dd9CabbD09De5C8a9D8aCeffD1bD9bDb9Dd7C7abD74D84D92Da2Cbc8D79CfffD18D19D98D99Db6Db7Dd4Dd5CcecD78C899D1eD2eD3eD4eD5eD6eD7eD8eD9eDbcDdaCeffD1cD2dD3dD4dD5dD6dD7dD8dD9cDbaDd8C5adD26D27D36C9aaD8cDabDc9CbccD05D14D23D32D34D41D50D52D60D70D80D90Da0Db0Dc0Dd0De1C8baD89C7bcDa4Dc2Cbc9D4bCbeeD4aC798Da9Dc7C7dfD48C6adD28D29Cac8D7aCbccD06D07De2De3C8a9D8bC7abD94Db2CabbD0bDe7CcddD04D22D40De0C6bdD39D66D76CaaaD0eDaeDccDeaC8bbDa5Dc3CabbD0aDe6CbdaD6aC795D6cC7cfD47C6abD54D64D72D82Cab8D3cD5bCaccD08De4C7a9Da7Dc5Cbb9D2bCcedD68C6adD46D56C9bbD0cDe8C8aaD24D42C7bdD49D86Cbc9D5aD69C799DaaDc8C9efD77C9aaD0dDadDcbDe9C8aaDa6Dc4C7bcD2aCacbD88C8cdD58CcdbD6bC798Da8Dc6C8dfD67CcdaD59C8a7D5cC7cfD38CbcaD7bC9dfD3aC6beD57CaddD87CddaD3bC898D7c"{
run("Generate Reconstructions");
}
// Tool 21
var boxSize = 20;
macro "Box ROI Tool - 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"{
getCursorLoc(x, y, z, flags);
left = 16
while ((flags&left)!=0) {
getCursorLoc(x, y, z, flags);
makeRectangle(x-(boxSize/2),y-(boxSize/2),boxSize,boxSize);
wait(10);
}
}
macro "Box ROI Tool Options" {
boxSize = getNumber("Box size (px): ", boxSize);
}
// Tool 24
macro "Line ROIs to Slices Action Tool - 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"{
run("Line ROIs To Slices");
}
// Tool 23
macro "Generate Zooms & Slices Action Tool - C222D48C59fDd9C47cDb9C59bDc7CdefD94CcccD38D58DbfC777D22Da2CbdfDc3CbccD97CaaaD6eD8dDbdCfffD9bDadCcddD00Df0C555D28Da8CacfDd3CbccD02D03D04Df2Df3Df4C999D6aCeffDe7De8CdddD23D25D32D52D72D7eD92D9dDa3Da5DbcC888D6dDbeCdefD53D55D74CbccD01D10D20D30D40D50D60D70D80D90Da0Db0Dc0Dd0De0Df1C9baD57CeffD1aDe6DeaCeeeD7cD8eC444D24Da4C7cfDc8CabbD05D06Df5Df6C899D87CdefD34D85Dc6Dd5CcdcD37C899D1bD2bD3bD4bD5bDdbDebCcdfDb3CaabD76CeffD96Db6Dd6CeffD19D2aD3aD4aD5aDdaDe9C566D6bDbbCbdfDb8CabcD65C9aaD09Df9CeffD93D95C999D6cD7dCbbbD8cD9fDacCfffDe4De5C333D26Da6C6afDd2C89bD59C89aD29CcccDcaC888DafCcdfD43D63Dd4CaaaD0bDbaDfbCcdeD75C375D46CbdfD44D54D64D84C9aaD0aDfaCeefD33Db5CacbD35C555D42D62D82C8dfDd8C9bcDb7C89aDa9CcccD27Da7CcefD73D83Db4Dc5CabbD07D08Df7Df8C666DabDcbC9baD36C333D68C59eDc9C8aaD56C678D69CbdfDc4C999D98D9eC8a9D47CbcdD86C7afDc2C9bbD45C89bD39C788D67CacfDb2C89bD49C8beDd7C799D66"{
run("Generate Zoom & Slices");
}
// Tool 24
macro "Workflow Action Tool - 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"{
run("Workflow ");
}