cpiwb.cabal

name:                cpiwb
version:             0.6.0.0
synopsis:            The CPi Workbench: An interactive command-line tool for working with the Continuous pi-Calculus
description:         The Continuous pi-Calculus is a process algebra for modelling continuous behaviour in biochemical systems.  The CPi Workbench is an interactive command-line tool for working with the calculus.  It provides facilities to read and parse .cpi files containing descriptions of CPi systems; to analyse their possible behaviour; and generate ODEs and numerical simulations of the systems they describe.
license:             GPL-3
license-file:        LICENSE
author:              Chris Banks, Ian Stark
maintainer:          C.Banks@ed.ac.uk, Ian.Stark@ed.ac.uk
copyright:           Chris Banks, Ian Stark
category:            SystemsBiology
build-type:          Simple
extra-source-files:  README, build
cabal-version:       >=1.18
-- The version must be able 1.18 to use sandboxes.
-- In fact it must also be <1.22; but cabal-version won't accept an upper
-- bound:
--
--   Warning: Packages relying on Cabal 1.10 or later must only specify a
--   version range of the form 'cabal-version: >= x.y'. Use 'cabal-version: >= 
--   1.10'.
--
-- The reason for needing cabal <1.22 is because we're using gtk2hs <0.13.
-- Gtk2HsSetup uses generateRegistrationInfo from Cabal's
-- Distribution.Simple.Register, and that had an API change at 1.22

-- Where the version of cabal is 1.22 or greater it's necessary to use the
-- --cabal-lib-version=1.??.??.?? switch in ./build to explicitly select an
-- earlier one (which must then be installed)

-- There's also a requirement that gcc must be at version <5.  I'm not sure
-- whether I can enforce this here.  There's a --with-gcc switch on cabal
-- install to point to the path for an appropriate gcc executable.  Again,
-- that needs to be set by hand in ./build

executable cpiwb
  main-is:             cpiwb.hs
  other-modules:       CPi.Logic, CPi.ODE, CPi.Plot, CPi.Signals, 
                       CPi.Lib,  CPi.Matlab,  CPi.Parser,  
                       CPi.Semantics, CPi.Tests
  other-extensions:    DeriveDataTypeable, TypeSynonymInstances,
                       FlexibleInstances, PatternGuards
  build-depends:       base >=4.7 && <4.8, parsec >=3.1 && <3.2,
                       containers >=0.5 && <0.6, transformers >=0.3 && <0.4,
                       process >=1.2 && <1.3, colour >=2.3 && <2.4,
                       data-accessor >=0.2 && <0.3, 
                       hmatrix-gsl, hmatrix, haskeline,
                       Chart<1.0, Chart-gtk, gtk<0.13

-- There's also a requirement to install gtk2hs-buildtools<0.13 first, which
-- this file cannot pick up.  I wonder if I can manually adjust Setup.hs for
-- this?  Why it has to be an earlier version, I don't know; could be the
-- String/Text issue noted below for gtk.

-- Chart/Chart-gtk must be at <1.0 to some things incorporated that were later
-- broken out into cairo.

-- Going up to higher versions, there's a problem with Plot.hs locating
-- renderabletoPDFFile; possibly because it only imports
-- Graphics.Rendering.Chart and ...Gtk There's a transition going to Chart1.0
-- where that command disappears (into Chart-cairo?)

-- We need gtk <0.13 so that eventKeyName in Graphics.UI.Gtk.Gdk.Events is
-- String not Text.  So an explicit mention of gtk with that constraint.

-- The source code directly uses the following modules
-- Numeric.GSL                  from hmatrix-gsl
-- Numeric.LinearAlgebra        from hmatrix
-- Graphics.Rendering.Chart     from Chart
-- Graphics.Rendering.Chart.Gtk from Chart-gtk
-- System.Console.Haskeline     from haskeline

  -- hs-source-dirs:      
  default-language:    Haskell2010