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Trying to run
ba-tsconcat \ /ocean/projects/med220004p/bshresth/vannucci/all_runs/scripts/outputs/ANTS_FSL_noBBR_lenient/output/pipeline_cpac_fmriprep-options/ \ /ocean/projects/med220004p/shared/data_derived/vannucci/tsconcat/ANTs_FSL_noBBR_lenient/ \ group \ -c run \ -w 8 \ -f
, getting
Index(['ds__dataset', 'ds__dataset_type', 'ds__dataset_path', 'ds__dataset_description', 'ent__sub', 'ent__ses', 'ent__sample', 'ent__task', 'ent__acq', 'ent__ce', 'ent__trc', 'ent__stain', 'ent__rec', 'ent__dir', 'ent__run', 'ent__mod', 'ent__echo', 'ent__flip', 'ent__inv', 'ent__mt', 'ent__part', 'ent__proc', 'ent__hemi', 'ent__space', 'ent__split', 'ent__recording', 'ent__chunk', 'ent__atlas', 'ent__res', 'ent__den', 'ent__label', 'ent__desc', 'ent__datatype', 'ent__suffix', 'ent__ext', 'ent__extra_entities', 'meta__json', 'finfo__file_path', 'finfo__link_target', 'finfo__mod_time'], dtype='object') ds__dataset ds__dataset_type ... finfo__link_target finfo__mod_time 0 None None ... None 1.711219e+09 1 None None ... None 1.711224e+09 2 None None ... None 1.711219e+09 3 None None ... None 1.711224e+09 4 None None ... None 1.711219e+09 ... ... ... ... ... ... 73349 None None ... None 1.711151e+09 73350 None None ... None 1.711157e+09 73351 None None ... None 1.711157e+09 73352 None None ... None 1.711157e+09 73353 None None ... None 1.711154e+09 [73354 rows x 40 columns] ds__dataset ds__dataset_type ... finfo__link_target finfo__mod_time 31 None None ... None 1.711220e+09 44 None None ... None 1.711240e+09 45 None None ... None 1.711242e+09 46 None None ... None 1.711220e+09 47 None None ... None 1.711220e+09 ... ... ... ... ... ... 73339 None None ... None 1.711180e+09 73342 None None ... None 1.711177e+09 73345 None None ... None 1.711186e+09 73346 None None ... None 1.711177e+09 73349 None None ... None 1.711151e+09 [15486 rows x 40 columns] Traceback (most recent call last): File "/ocean/projects/med220004p/jclucas/.conda/envs/tsconcat/bin/ba-tsconcat", line 8, in <module> sys.exit(main()) ^^^^^^ File "/ocean/projects/med220004p/jclucas/.conda/envs/tsconcat/lib/python3.11/site-packages/tsconcat/cli.py", line 194, in main df_reduced_bold = df_reduced_bold.astype( ^^^^^^^^^^^^^^^^^^^^^^^ File "/ocean/projects/med220004p/jclucas/.conda/envs/tsconcat/lib/python3.11/site-packages/pandas/core/generic.py", line 6605, in astype raise KeyError( KeyError: "Only a column name can be used for the key in a dtype mappings argument. 'sidecar' not found in columns."
# packages in environment at /ocean/projects/med220004p/jclucas/.conda/envs/tsconcat: # # Name Version Build Channel _libgcc_mutex 0.1 main _openmp_mutex 5.1 1_gnu ba-tsconcat 0.1.1 pypi_0 pypi bids2table 0.1.0b0 pypi_0 pypi build 1.2.1 pypi_0 pypi bzip2 1.0.8 h5eee18b_5 ca-certificates 2024.3.11 h06a4308_0 cachecontrol 0.14.0 pypi_0 pypi certifi 2024.2.2 pypi_0 pypi cffi 1.16.0 pypi_0 pypi charset-normalizer 3.3.2 pypi_0 pypi cleo 2.1.0 pypi_0 pypi cpac 1.8.6.post1.dev1 pypi_0 pypi crashtest 0.4.1 pypi_0 pypi cryptography 42.0.5 pypi_0 pypi distlib 0.3.8 pypi_0 pypi docker 7.0.0 pypi_0 pypi docker-pycreds 0.4.0 pypi_0 pypi dockerpty 0.4.1 pypi_0 pypi dulwich 0.21.7 pypi_0 pypi elbow 0.1.1 pypi_0 pypi fastjsonschema 2.19.1 pypi_0 pypi filelock 3.13.4 pypi_0 pypi idna 3.7 pypi_0 pypi importlib-metadata 7.1.0 pypi_0 pypi installer 0.7.0 pypi_0 pypi jaraco-classes 3.4.0 pypi_0 pypi jeepney 0.8.0 pypi_0 pypi keyring 24.3.1 pypi_0 pypi ld_impl_linux-64 2.38 h1181459_1 libffi 3.4.4 h6a678d5_0 libgcc-ng 11.2.0 h1234567_1 libgomp 11.2.0 h1234567_1 libstdcxx-ng 11.2.0 h1234567_1 libuuid 1.41.5 h5eee18b_0 markdown-it-py 3.0.0 pypi_0 pypi mdurl 0.1.2 pypi_0 pypi more-itertools 10.2.0 pypi_0 pypi msgpack 1.0.8 pypi_0 pypi ncurses 6.4 h6a678d5_0 nibabel 5.2.1 pypi_0 pypi numpy 1.26.4 pypi_0 pypi openssl 3.0.13 h7f8727e_0 packaging 24.0 pypi_0 pypi pandas 2.2.2 pypi_0 pypi pexpect 4.9.0 pypi_0 pypi pip 23.3.1 pypi_0 pypi pkginfo 1.10.0 pypi_0 pypi platformdirs 4.2.1 pypi_0 pypi poetry 1.8.2 pypi_0 pypi poetry-core 1.9.0 pypi_0 pypi poetry-plugin-export 1.7.1 pypi_0 pypi ptyprocess 0.7.0 pypi_0 pypi pyarrow 16.0.0 pypi_0 pypi pycparser 2.22 pypi_0 pypi pygments 2.17.2 pypi_0 pypi pyproject-hooks 1.1.0 pypi_0 pypi python 3.11.9 h955ad1f_0 python-dateutil 2.9.0.post0 pypi_0 pypi pytz 2024.1 pypi_0 pypi pyyaml 6.0.1 pypi_0 pypi rapidfuzz 3.8.1 pypi_0 pypi readline 8.2 h5eee18b_0 requests 2.31.0 pypi_0 pypi requests-toolbelt 1.0.0 pypi_0 pypi rich 13.7.1 pypi_0 pypi secretstorage 3.3.3 pypi_0 pypi semver 3.0.2 pypi_0 pypi setuptools 68.2.2 pypi_0 pypi shellingham 1.5.4 pypi_0 pypi six 1.16.0 pypi_0 pypi spython 0.3.13 pypi_0 pypi sqlite 3.41.2 h5eee18b_0 tabulate 0.9.0 pypi_0 pypi tk 8.6.12 h1ccaba5_0 tomlkit 0.12.4 pypi_0 pypi tornado 6.4 pypi_0 pypi tqdm 4.66.2 pypi_0 pypi trove-classifiers 2024.4.10 pypi_0 pypi typing-extensions 4.11.0 pypi_0 pypi tzdata 2024.1 pypi_0 pypi urllib3 2.2.1 pypi_0 pypi virtualenv 20.26.0 pypi_0 pypi websocket-client 1.8.0 pypi_0 pypi wheel 0.41.2 pypi_0 pypi xz 5.4.6 h5eee18b_0 zipp 3.18.1 pypi_0 pypi zlib 1.2.13 h5eee18b_0
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