From 10b0c6605fa597710b298562f0e6facf671f928c Mon Sep 17 00:00:00 2001 From: nx10 Date: Thu, 25 Apr 2024 14:49:02 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20childmin?= =?UTF-8?q?dresearch/styx@d0be38f559ce5edebc49043f698a019501817021=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- search.js | 2 +- styx/boutiques/model.html | 8 +- styx/compiler/compile/constraints.html | 34 ++-- styx/compiler/compile/descriptor.html | 234 +++++++++++++------------ styx/main.html | 70 ++++---- 5 files changed, 180 insertions(+), 168 deletions(-) diff --git a/search.js b/search.js index 6b827cb..6e902c8 100644 --- a/search.js +++ b/search.js @@ -1,6 +1,6 @@ window.pdocSearch = (function(){ /** elasticlunr - http://weixsong.github.io * Copyright (C) 2017 Oliver Nightingale * Copyright (C) 2017 Wei Song * MIT Licensed */!function(){function e(e){if(null===e||"object"!=typeof e)return e;var t=e.constructor();for(var n in e)e.hasOwnProperty(n)&&(t[n]=e[n]);return t}var t=function(e){var n=new t.Index;return n.pipeline.add(t.trimmer,t.stopWordFilter,t.stemmer),e&&e.call(n,n),n};t.version="0.9.5",lunr=t,t.utils={},t.utils.warn=function(e){return function(t){e.console&&console.warn&&console.warn(t)}}(this),t.utils.toString=function(e){return void 0===e||null===e?"":e.toString()},t.EventEmitter=function(){this.events={}},t.EventEmitter.prototype.addListener=function(){var e=Array.prototype.slice.call(arguments),t=e.pop(),n=e;if("function"!=typeof t)throw new TypeError("last argument must be a function");n.forEach(function(e){this.hasHandler(e)||(this.events[e]=[]),this.events[e].push(t)},this)},t.EventEmitter.prototype.removeListener=function(e,t){if(this.hasHandler(e)){var n=this.events[e].indexOf(t);-1!==n&&(this.events[e].splice(n,1),0==this.events[e].length&&delete this.events[e])}},t.EventEmitter.prototype.emit=function(e){if(this.hasHandler(e)){var t=Array.prototype.slice.call(arguments,1);this.events[e].forEach(function(e){e.apply(void 0,t)},this)}},t.EventEmitter.prototype.hasHandler=function(e){return e in this.events},t.tokenizer=function(e){if(!arguments.length||null===e||void 0===e)return[];if(Array.isArray(e)){var n=e.filter(function(e){return null===e||void 0===e?!1:!0});n=n.map(function(e){return t.utils.toString(e).toLowerCase()});var i=[];return n.forEach(function(e){var n=e.split(t.tokenizer.seperator);i=i.concat(n)},this),i}return e.toString().trim().toLowerCase().split(t.tokenizer.seperator)},t.tokenizer.defaultSeperator=/[\s\-]+/,t.tokenizer.seperator=t.tokenizer.defaultSeperator,t.tokenizer.setSeperator=function(e){null!==e&&void 0!==e&&"object"==typeof e&&(t.tokenizer.seperator=e)},t.tokenizer.resetSeperator=function(){t.tokenizer.seperator=t.tokenizer.defaultSeperator},t.tokenizer.getSeperator=function(){return t.tokenizer.seperator},t.Pipeline=function(){this._queue=[]},t.Pipeline.registeredFunctions={},t.Pipeline.registerFunction=function(e,n){n in t.Pipeline.registeredFunctions&&t.utils.warn("Overwriting existing registered function: "+n),e.label=n,t.Pipeline.registeredFunctions[n]=e},t.Pipeline.getRegisteredFunction=function(e){return e in t.Pipeline.registeredFunctions!=!0?null:t.Pipeline.registeredFunctions[e]},t.Pipeline.warnIfFunctionNotRegistered=function(e){var n=e.label&&e.label in this.registeredFunctions;n||t.utils.warn("Function is not registered with pipeline. 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e.elements=this.toArray(),e.length=e.elements.length,e},lunr.SortedSet.prototype.union=function(e){var t,n,i;this.length>=e.length?(t=this,n=e):(t=e,n=this),i=t.clone();for(var o=0,r=n.toArray();oStyx\n\n

\n \n

\n\n

\"Build\"\n\"codecov\"\n\"Ruff\"\n\"stability-wip\"\n\"MIT\n\"pages\"

\n\n

Compile Python command line tool wrappers from Boutiques descriptors.

\n\n

Features

\n\n
    \n
  • Target modern Python (3.11+)
    • \n
  • Intellisense & full static type checking for inputs and outputs
    • \n
  • Documentation generation
    • \n
  • Custom execution environments via dependency injection
    • \n
  • Runtime input validation
    • \n
  • Integration test generation
    • \n
  • Default runners\n
      \n
    • Local
      • \n
    • Docker
      • \n
    • Singularity
      • \n
    • \n
\n\n

Boutiques descriptor implementation status: 77%

\n\n
    \n
  • Documentation
    • \n
  • Types (String, Numerical, File)
    • \n
  • Flags
    • \n
  • Lists
    • \n
  • Enums
    • \n
  • Constraints (Numeric ranges, Groups)
    • \n
  • (Conditional) outputs
    • \n
  • Static metadata (Hash, name, container environment)
    • \n
  • Tests
    • \n
\n"}, "styx.boutiques": {"fullname": "styx.boutiques", "modulename": "styx.boutiques", "kind": "module", "doc": "

Boutiques.

\n\n

model.py was created via the following command:

\n\n
datamodel-codegen     --input boutiques/tools/python/boutiques/schema/descriptor.schema.json     --input-file-type jsonschema     --output src/boutiques-codegen/model.py     --output-model-type pydantic_v2.BaseModel\n
\n"}, "styx.boutiques.model": {"fullname": "styx.boutiques.model", "modulename": "styx.boutiques.model", "kind": "module", "doc": "

\n"}, "styx.boutiques.model.Type": {"fullname": "styx.boutiques.model.Type", "modulename": "styx.boutiques.model", "qualname": "Type", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type.docker": {"fullname": "styx.boutiques.model.Type.docker", "modulename": "styx.boutiques.model", "qualname": "Type.docker", "kind": "variable", "doc": "

\n", "default_value": "<Type.docker: 'docker'>"}, "styx.boutiques.model.Type.singularity": {"fullname": "styx.boutiques.model.Type.singularity", "modulename": "styx.boutiques.model", "qualname": "Type.singularity", "kind": "variable", "doc": "

\n", "default_value": "<Type.singularity: 'singularity'>"}, "styx.boutiques.model.ContainerImageItem": {"fullname": "styx.boutiques.model.ContainerImageItem", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImageItem.model_config": {"fullname": "styx.boutiques.model.ContainerImageItem.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImageItem.type": {"fullname": "styx.boutiques.model.ContainerImageItem.type", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type"}, "styx.boutiques.model.ContainerImageItem.image": {"fullname": "styx.boutiques.model.ContainerImageItem.image", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.image", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.ContainerImageItem.entrypoint": {"fullname": "styx.boutiques.model.ContainerImageItem.entrypoint", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.entrypoint", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.ContainerImageItem.index": {"fullname": "styx.boutiques.model.ContainerImageItem.index", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.index", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImageItem.container_opts": {"fullname": "styx.boutiques.model.ContainerImageItem.container_opts", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.container_opts", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.ContainerImageItem.working_directory": {"fullname": "styx.boutiques.model.ContainerImageItem.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem.container_hash": {"fullname": "styx.boutiques.model.ContainerImageItem.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem.model_fields": {"fullname": "styx.boutiques.model.ContainerImageItem.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type, required=True), 'image': FieldInfo(annotation=str, required=True, description='Name of an image where the tool is installed and configured. Example: bids/mriqc.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'entrypoint': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Flag indicating whether or not the container uses an entrypoint.'), 'index': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Optional index where the image is available, if not the standard location. Example: docker.io'), 'container_opts': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='container-opts', alias_priority=2, description='Container-level arguments for the application. Example: --privileged'), 'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2)}"}, "styx.boutiques.model.ContainerImageItem.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImageItem.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type1": {"fullname": "styx.boutiques.model.Type1", "modulename": "styx.boutiques.model", "qualname": "Type1", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type1.rootfs": {"fullname": "styx.boutiques.model.Type1.rootfs", "modulename": "styx.boutiques.model", "qualname": "Type1.rootfs", "kind": "variable", "doc": "

\n", "default_value": "<Type1.rootfs: 'rootfs'>"}, "styx.boutiques.model.ContainerImageItem1": {"fullname": "styx.boutiques.model.ContainerImageItem1", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImageItem1.model_config": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImageItem1.type": {"fullname": "styx.boutiques.model.ContainerImageItem1.type", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type1"}, "styx.boutiques.model.ContainerImageItem1.url": {"fullname": "styx.boutiques.model.ContainerImageItem1.url", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.url", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.ContainerImageItem1.working_directory": {"fullname": "styx.boutiques.model.ContainerImageItem1.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem1.container_hash": {"fullname": "styx.boutiques.model.ContainerImageItem1.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem1.model_fields": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type1, required=True), 'url': FieldInfo(annotation=str, required=True, description='URL where the image is available.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2)}"}, "styx.boutiques.model.ContainerImageItem1.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage1": {"fullname": "styx.boutiques.model.ContainerImage1", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImage1.working_directory": {"fullname": "styx.boutiques.model.ContainerImage1.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImage1.container_hash": {"fullname": "styx.boutiques.model.ContainerImage1.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImage1.model_config": {"fullname": "styx.boutiques.model.ContainerImage1.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage1.model_fields": {"fullname": "styx.boutiques.model.ContainerImage1.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='working-directory', alias_priority=2, description='Location from which this task must be launched within the container.'), 'container_hash': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='container-hash', alias_priority=2, description='Hash for the given container.')}"}, "styx.boutiques.model.ContainerImage1.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage2": {"fullname": "styx.boutiques.model.ContainerImage2", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "ContainerImageItem, ContainerImage1"}, "styx.boutiques.model.ContainerImage2.model_config": {"fullname": "styx.boutiques.model.ContainerImage2.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImage2.model_fields": {"fullname": "styx.boutiques.model.ContainerImage2.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2), 'type': FieldInfo(annotation=Type, required=True), 'image': FieldInfo(annotation=str, required=True, description='Name of an image where the tool is installed and configured. Example: bids/mriqc.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'entrypoint': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Flag indicating whether or not the container uses an entrypoint.'), 'index': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Optional index where the image is available, if not the standard location. Example: docker.io'), 'container_opts': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='container-opts', alias_priority=2, description='Container-level arguments for the application. Example: --privileged')}"}, "styx.boutiques.model.ContainerImage2.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage2.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage3": {"fullname": "styx.boutiques.model.ContainerImage3", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "ContainerImageItem1, ContainerImage1"}, "styx.boutiques.model.ContainerImage3.model_config": {"fullname": "styx.boutiques.model.ContainerImage3.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImage3.model_fields": {"fullname": "styx.boutiques.model.ContainerImage3.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2), 'type': FieldInfo(annotation=Type1, required=True), 'url': FieldInfo(annotation=str, required=True, description='URL where the image is available.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)])}"}, "styx.boutiques.model.ContainerImage3.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage3.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage": {"fullname": "styx.boutiques.model.ContainerImage", "modulename": "styx.boutiques.model", "qualname": "ContainerImage", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/#rootmodel-and-custom-root-types

\n\n

A Pydantic BaseModel for the root object of the model.

\n\n
Attributes:
\n\n
    \n
  • root: The root object of the model.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_private__: Private fields in the model.
    • \n
  • __pydantic_extra__: Extra fields in the model.
    • \n
\n", "bases": "pydantic.main.BaseModel, typing.Generic[~RootModelRootType]"}, "styx.boutiques.model.ContainerImage.root": {"fullname": "styx.boutiques.model.ContainerImage.root", "modulename": "styx.boutiques.model", "qualname": "ContainerImage.root", "kind": "variable", "doc": "

\n", "annotation": ": Union[styx.boutiques.model.ContainerImage2, styx.boutiques.model.ContainerImage3]"}, "styx.boutiques.model.SchemaVersion": {"fullname": "styx.boutiques.model.SchemaVersion", "modulename": "styx.boutiques.model", "qualname": "SchemaVersion", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.SchemaVersion.field_0_5": {"fullname": "styx.boutiques.model.SchemaVersion.field_0_5", "modulename": "styx.boutiques.model", "qualname": "SchemaVersion.field_0_5", "kind": "variable", "doc": "

\n", "default_value": "<SchemaVersion.field_0_5: '0.5'>"}, "styx.boutiques.model.EnvironmentVariable": {"fullname": "styx.boutiques.model.EnvironmentVariable", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.EnvironmentVariable.model_config": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_config", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.EnvironmentVariable.name": {"fullname": "styx.boutiques.model.EnvironmentVariable.name", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[a-z,A-Z][0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.EnvironmentVariable.value": {"fullname": "styx.boutiques.model.EnvironmentVariable.value", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.value", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.boutiques.model.EnvironmentVariable.description": {"fullname": "styx.boutiques.model.EnvironmentVariable.description", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.EnvironmentVariable.model_fields": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_fields", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='The environment variable name (identifier) containing only alphanumeric characters and underscores. Example: "PROGRAM_PATH".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[a-z,A-Z][0-9,_,a-z,A-Z]*$')]), 'value': FieldInfo(annotation=str, required=True, description='The value of the environment variable.'), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Description of the environment variable.')}"}, "styx.boutiques.model.EnvironmentVariable.model_computed_fields": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Group": {"fullname": "styx.boutiques.model.Group", "modulename": "styx.boutiques.model", "qualname": "Group", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Group.model_config": {"fullname": "styx.boutiques.model.Group.model_config", "modulename": "styx.boutiques.model", "qualname": "Group.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Group.id": {"fullname": "styx.boutiques.model.Group.id", "modulename": "styx.boutiques.model", "qualname": "Group.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Group.name": {"fullname": "styx.boutiques.model.Group.name", "modulename": "styx.boutiques.model", "qualname": "Group.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Group.description": {"fullname": "styx.boutiques.model.Group.description", "modulename": "styx.boutiques.model", "qualname": "Group.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Group.members": {"fullname": "styx.boutiques.model.Group.members", "modulename": "styx.boutiques.model", "qualname": "Group.members", "kind": "variable", "doc": "

\n", "annotation": ": List[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]]"}, "styx.boutiques.model.Group.mutually_exclusive": {"fullname": "styx.boutiques.model.Group.mutually_exclusive", "modulename": "styx.boutiques.model", "qualname": "Group.mutually_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.one_is_required": {"fullname": "styx.boutiques.model.Group.one_is_required", "modulename": "styx.boutiques.model", "qualname": "Group.one_is_required", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.all_or_none": {"fullname": "styx.boutiques.model.Group.all_or_none", "modulename": "styx.boutiques.model", "qualname": "Group.all_or_none", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.model_fields": {"fullname": "styx.boutiques.model.Group.model_fields", "modulename": "styx.boutiques.model", "qualname": "Group.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "outfile_group".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description='A human-readable name for the input group.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Description of the input group.'), 'members': FieldInfo(annotation=List[Annotated[str, StringConstraints]], required=True, description='IDs of the inputs belonging to this group.'), 'mutually_exclusive': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='mutually-exclusive', alias_priority=2, description='True if only one input in the group may be active at runtime.'), 'one_is_required': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='one-is-required', alias_priority=2, description='True if at least one of the inputs in the group must be active at runtime.'), 'all_or_none': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='all-or-none', alias_priority=2, description='True if members of the group need to be toggled together')}"}, "styx.boutiques.model.Group.model_computed_fields": {"fullname": "styx.boutiques.model.Group.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Group.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type2": {"fullname": "styx.boutiques.model.Type2", "modulename": "styx.boutiques.model", "qualname": "Type2", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type2.Flag": {"fullname": "styx.boutiques.model.Type2.Flag", "modulename": "styx.boutiques.model", "qualname": "Type2.Flag", "kind": "variable", "doc": "

\n", "default_value": "<Type2.Flag: 'Flag'>"}, "styx.boutiques.model.ListModel": {"fullname": "styx.boutiques.model.ListModel", "modulename": "styx.boutiques.model", "qualname": "ListModel", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.ListModel.bool_False": {"fullname": "styx.boutiques.model.ListModel.bool_False", "modulename": "styx.boutiques.model", "qualname": "ListModel.bool_False", "kind": "variable", "doc": "

\n", "default_value": "<ListModel.bool_False: False>"}, "styx.boutiques.model.Input": {"fullname": "styx.boutiques.model.Input", "modulename": "styx.boutiques.model", "qualname": "Input", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Input.type": {"fullname": "styx.boutiques.model.Input.type", "modulename": "styx.boutiques.model", "qualname": "Input.type", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.Type2]"}, "styx.boutiques.model.Input.list": {"fullname": "styx.boutiques.model.Input.list", "modulename": "styx.boutiques.model", "qualname": "Input.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ListModel]"}, "styx.boutiques.model.Input.model_config": {"fullname": "styx.boutiques.model.Input.model_config", "modulename": "styx.boutiques.model", "qualname": "Input.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Input.model_fields": {"fullname": "styx.boutiques.model.Input.model_fields", "modulename": "styx.boutiques.model", "qualname": "Input.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Union[Type2, NoneType], required=False), 'list': FieldInfo(annotation=Union[ListModel, NoneType], required=False)}"}, "styx.boutiques.model.Input.model_computed_fields": {"fullname": "styx.boutiques.model.Input.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Input.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type3": {"fullname": "styx.boutiques.model.Type3", "modulename": "styx.boutiques.model", "qualname": "Type3", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type3.String": {"fullname": "styx.boutiques.model.Type3.String", "modulename": "styx.boutiques.model", "qualname": "Type3.String", "kind": "variable", "doc": "

\n", "default_value": "<Type3.String: 'String'>"}, "styx.boutiques.model.Type3.File": {"fullname": "styx.boutiques.model.Type3.File", "modulename": "styx.boutiques.model", "qualname": "Type3.File", "kind": "variable", "doc": "

\n", "default_value": "<Type3.File: 'File'>"}, "styx.boutiques.model.Type3.Number": {"fullname": "styx.boutiques.model.Type3.Number", "modulename": "styx.boutiques.model", "qualname": "Type3.Number", "kind": "variable", "doc": "

\n", "default_value": "<Type3.Number: 'Number'>"}, "styx.boutiques.model.Input1": {"fullname": "styx.boutiques.model.Input1", "modulename": "styx.boutiques.model", "qualname": "Input1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Input1.type": {"fullname": "styx.boutiques.model.Input1.type", "modulename": "styx.boutiques.model", "qualname": "Input1.type", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.Type3]"}, "styx.boutiques.model.Input1.model_config": {"fullname": "styx.boutiques.model.Input1.model_config", "modulename": "styx.boutiques.model", "qualname": "Input1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Input1.model_fields": {"fullname": "styx.boutiques.model.Input1.model_fields", "modulename": "styx.boutiques.model", "qualname": "Input1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Union[Type3, NoneType], required=False)}"}, "styx.boutiques.model.Input1.model_computed_fields": {"fullname": "styx.boutiques.model.Input1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Input1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type4": {"fullname": "styx.boutiques.model.Type4", "modulename": "styx.boutiques.model", "qualname": "Type4", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type4.String": {"fullname": "styx.boutiques.model.Type4.String", "modulename": "styx.boutiques.model", "qualname": "Type4.String", "kind": "variable", "doc": "

\n", "default_value": "<Type4.String: 'String'>"}, "styx.boutiques.model.Type4.File": {"fullname": "styx.boutiques.model.Type4.File", "modulename": "styx.boutiques.model", "qualname": "Type4.File", "kind": "variable", "doc": "

\n", "default_value": "<Type4.File: 'File'>"}, "styx.boutiques.model.Type4.Flag": {"fullname": "styx.boutiques.model.Type4.Flag", "modulename": "styx.boutiques.model", "qualname": "Type4.Flag", "kind": "variable", "doc": "

\n", "default_value": "<Type4.Flag: 'Flag'>"}, "styx.boutiques.model.Type4.Number": {"fullname": "styx.boutiques.model.Type4.Number", "modulename": "styx.boutiques.model", "qualname": "Type4.Number", "kind": "variable", "doc": "

\n", "default_value": "<Type4.Number: 'Number'>"}, "styx.boutiques.model.Inputs": {"fullname": "styx.boutiques.model.Inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "Input"}, "styx.boutiques.model.Inputs.model_config": {"fullname": "styx.boutiques.model.Inputs.model_config", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Inputs.id": {"fullname": "styx.boutiques.model.Inputs.id", "modulename": "styx.boutiques.model", "qualname": "Inputs.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Inputs.name": {"fullname": "styx.boutiques.model.Inputs.name", "modulename": "styx.boutiques.model", "qualname": "Inputs.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Inputs.type": {"fullname": "styx.boutiques.model.Inputs.type", "modulename": "styx.boutiques.model", "qualname": "Inputs.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type4"}, "styx.boutiques.model.Inputs.description": {"fullname": "styx.boutiques.model.Inputs.description", "modulename": "styx.boutiques.model", "qualname": "Inputs.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.value_key": {"fullname": "styx.boutiques.model.Inputs.value_key", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.list": {"fullname": "styx.boutiques.model.Inputs.list", "modulename": "styx.boutiques.model", "qualname": "Inputs.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.list_separator": {"fullname": "styx.boutiques.model.Inputs.list_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.optional": {"fullname": "styx.boutiques.model.Inputs.optional", "modulename": "styx.boutiques.model", "qualname": "Inputs.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.command_line_flag": {"fullname": "styx.boutiques.model.Inputs.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "Inputs.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.requires_inputs": {"fullname": "styx.boutiques.model.Inputs.requires_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs.requires_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs.disables_inputs": {"fullname": "styx.boutiques.model.Inputs.disables_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs.disables_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs.command_line_flag_separator": {"fullname": "styx.boutiques.model.Inputs.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.default_value": {"fullname": "styx.boutiques.model.Inputs.default_value", "modulename": "styx.boutiques.model", "qualname": "Inputs.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.Inputs.value_choices": {"fullname": "styx.boutiques.model.Inputs.value_choices", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_choices", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[str, float]]]"}, "styx.boutiques.model.Inputs.value_requires": {"fullname": "styx.boutiques.model.Inputs.value_requires", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_requires", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs.value_disables": {"fullname": "styx.boutiques.model.Inputs.value_disables", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_disables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs.integer": {"fullname": "styx.boutiques.model.Inputs.integer", "modulename": "styx.boutiques.model", "qualname": "Inputs.integer", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.minimum": {"fullname": "styx.boutiques.model.Inputs.minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs.minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.maximum": {"fullname": "styx.boutiques.model.Inputs.maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs.maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.exclusive_minimum": {"fullname": "styx.boutiques.model.Inputs.exclusive_minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs.exclusive_minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.exclusive_maximum": {"fullname": "styx.boutiques.model.Inputs.exclusive_maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs.exclusive_maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.min_list_entries": {"fullname": "styx.boutiques.model.Inputs.min_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs.min_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.max_list_entries": {"fullname": "styx.boutiques.model.Inputs.max_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs.max_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.uses_absolute_path": {"fullname": "styx.boutiques.model.Inputs.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "Inputs.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.model_fields": {"fullname": "styx.boutiques.model.Inputs.model_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type4, required=True, description='Input type.'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is a list of value. An input of type "Flag" cannot be a list.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable input name. Example: 'Data file'.", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Input description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the input value and/or flag at runtime.'), 'list_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='list-separator', alias_priority=2, description='Separator used between list items. Defaults to a single space.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is optional.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the input, involved in the value-key substitution. Inputs of type "Flag" have to have a command-line flag. Examples: -v, --force.'), 'requires_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='requires-inputs', alias_priority=2, description='Ids of the inputs or ids of groups whose members must be active for this input to be available.'), 'disables_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='disables-inputs', alias_priority=2, description='Ids of the inputs that are disabled when this input is active.'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'default_value': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='default-value', alias_priority=2, description='Default value of the input. The default value is set when no value is specified, even when the input is optional. If the desired behavior is to omit the input from the command line when no value is specified, then no default value should be used. In this case, the tool might still use a default value internally, but this will remain undocumented in the Boutiques interface.'), 'value_choices': FieldInfo(annotation=Union[List[Union[str, float]], NoneType], required=False, alias='value-choices', alias_priority=2, description='Permitted choices for input value. May not be used with the Flag type.'), 'value_requires': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-requires', alias_priority=2, description='Ids of the inputs that are required when the corresponding value choice is selected.'), 'value_disables': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-disables', alias_priority=2, description='Ids of the inputs that are disabled when the corresponding value choice is selected.'), 'integer': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Specify whether the input should be an integer. May only be used with Number type inputs.'), 'minimum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the minimum value of the input (inclusive). May only be used with Number type inputs.'), 'maximum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the maximum value of the input (inclusive). May only be used with Number type inputs.'), 'exclusive_minimum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-minimum', alias_priority=2, description='Specify whether the minimum is exclusive or not. May only be used with Number type inputs.'), 'exclusive_maximum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-maximum', alias_priority=2, description='Specify whether the maximum is exclusive or not. May only be used with Number type inputs.'), 'min_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='min-list-entries', alias_priority=2, description='Specify the minimum number of entries in the list. May only be used with List type inputs.'), 'max_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='max-list-entries', alias_priority=2, description='Specify the maximum number of entries in the list. May only be used with List type inputs.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this input must be given as an absolute path. Only specifiable for File type inputs.')}"}, "styx.boutiques.model.Inputs.model_computed_fields": {"fullname": "styx.boutiques.model.Inputs.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Inputs1": {"fullname": "styx.boutiques.model.Inputs1", "modulename": "styx.boutiques.model", "qualname": "Inputs1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "Input1"}, "styx.boutiques.model.Inputs1.model_config": {"fullname": "styx.boutiques.model.Inputs1.model_config", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Inputs1.id": {"fullname": "styx.boutiques.model.Inputs1.id", "modulename": "styx.boutiques.model", "qualname": "Inputs1.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Inputs1.name": {"fullname": "styx.boutiques.model.Inputs1.name", "modulename": "styx.boutiques.model", "qualname": "Inputs1.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Inputs1.type": {"fullname": "styx.boutiques.model.Inputs1.type", "modulename": "styx.boutiques.model", "qualname": "Inputs1.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type4"}, "styx.boutiques.model.Inputs1.description": {"fullname": "styx.boutiques.model.Inputs1.description", "modulename": "styx.boutiques.model", "qualname": "Inputs1.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.value_key": {"fullname": "styx.boutiques.model.Inputs1.value_key", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.list": {"fullname": "styx.boutiques.model.Inputs1.list", "modulename": "styx.boutiques.model", "qualname": "Inputs1.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.list_separator": {"fullname": "styx.boutiques.model.Inputs1.list_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs1.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.optional": {"fullname": "styx.boutiques.model.Inputs1.optional", "modulename": "styx.boutiques.model", "qualname": "Inputs1.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.command_line_flag": {"fullname": "styx.boutiques.model.Inputs1.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "Inputs1.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.requires_inputs": {"fullname": "styx.boutiques.model.Inputs1.requires_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs1.requires_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs1.disables_inputs": {"fullname": "styx.boutiques.model.Inputs1.disables_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs1.disables_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs1.command_line_flag_separator": {"fullname": "styx.boutiques.model.Inputs1.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs1.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.default_value": {"fullname": "styx.boutiques.model.Inputs1.default_value", "modulename": "styx.boutiques.model", "qualname": "Inputs1.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.Inputs1.value_choices": {"fullname": "styx.boutiques.model.Inputs1.value_choices", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_choices", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[str, float]]]"}, "styx.boutiques.model.Inputs1.value_requires": {"fullname": "styx.boutiques.model.Inputs1.value_requires", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_requires", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs1.value_disables": {"fullname": "styx.boutiques.model.Inputs1.value_disables", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_disables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs1.integer": {"fullname": "styx.boutiques.model.Inputs1.integer", "modulename": "styx.boutiques.model", "qualname": "Inputs1.integer", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.minimum": {"fullname": "styx.boutiques.model.Inputs1.minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.maximum": {"fullname": "styx.boutiques.model.Inputs1.maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.exclusive_minimum": {"fullname": "styx.boutiques.model.Inputs1.exclusive_minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.exclusive_minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.exclusive_maximum": {"fullname": "styx.boutiques.model.Inputs1.exclusive_maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.exclusive_maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.min_list_entries": {"fullname": "styx.boutiques.model.Inputs1.min_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs1.min_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.max_list_entries": {"fullname": "styx.boutiques.model.Inputs1.max_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs1.max_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.uses_absolute_path": {"fullname": "styx.boutiques.model.Inputs1.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "Inputs1.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.model_fields": {"fullname": "styx.boutiques.model.Inputs1.model_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type4, required=True, description='Input type.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable input name. Example: 'Data file'.", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Input description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the input value and/or flag at runtime.'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is a list of value. An input of type "Flag" cannot be a list.'), 'list_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='list-separator', alias_priority=2, description='Separator used between list items. Defaults to a single space.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is optional.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the input, involved in the value-key substitution. Inputs of type "Flag" have to have a command-line flag. Examples: -v, --force.'), 'requires_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='requires-inputs', alias_priority=2, description='Ids of the inputs or ids of groups whose members must be active for this input to be available.'), 'disables_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='disables-inputs', alias_priority=2, description='Ids of the inputs that are disabled when this input is active.'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'default_value': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='default-value', alias_priority=2, description='Default value of the input. The default value is set when no value is specified, even when the input is optional. If the desired behavior is to omit the input from the command line when no value is specified, then no default value should be used. In this case, the tool might still use a default value internally, but this will remain undocumented in the Boutiques interface.'), 'value_choices': FieldInfo(annotation=Union[List[Union[str, float]], NoneType], required=False, alias='value-choices', alias_priority=2, description='Permitted choices for input value. May not be used with the Flag type.'), 'value_requires': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-requires', alias_priority=2, description='Ids of the inputs that are required when the corresponding value choice is selected.'), 'value_disables': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-disables', alias_priority=2, description='Ids of the inputs that are disabled when the corresponding value choice is selected.'), 'integer': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Specify whether the input should be an integer. May only be used with Number type inputs.'), 'minimum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the minimum value of the input (inclusive). May only be used with Number type inputs.'), 'maximum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the maximum value of the input (inclusive). May only be used with Number type inputs.'), 'exclusive_minimum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-minimum', alias_priority=2, description='Specify whether the minimum is exclusive or not. May only be used with Number type inputs.'), 'exclusive_maximum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-maximum', alias_priority=2, description='Specify whether the maximum is exclusive or not. May only be used with Number type inputs.'), 'min_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='min-list-entries', alias_priority=2, description='Specify the minimum number of entries in the list. May only be used with List type inputs.'), 'max_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='max-list-entries', alias_priority=2, description='Specify the maximum number of entries in the list. May only be used with List type inputs.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this input must be given as an absolute path. Only specifiable for File type inputs.')}"}, "styx.boutiques.model.Inputs1.model_computed_fields": {"fullname": "styx.boutiques.model.Inputs1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Test": {"fullname": "styx.boutiques.model.Test", "modulename": "styx.boutiques.model", "qualname": "Test", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Test.name": {"fullname": "styx.boutiques.model.Test.name", "modulename": "styx.boutiques.model", "qualname": "Test.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Test.invocation": {"fullname": "styx.boutiques.model.Test.invocation", "modulename": "styx.boutiques.model", "qualname": "Test.invocation", "kind": "variable", "doc": "

\n", "annotation": ": Dict[str, Any]"}, "styx.boutiques.model.Test.model_config": {"fullname": "styx.boutiques.model.Test.model_config", "modulename": "styx.boutiques.model", "qualname": "Test.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Test.model_fields": {"fullname": "styx.boutiques.model.Test.model_fields", "modulename": "styx.boutiques.model", "qualname": "Test.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='Name of the test-case', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'invocation': FieldInfo(annotation=Dict[str, Any], required=True)}"}, "styx.boutiques.model.Test.model_computed_fields": {"fullname": "styx.boutiques.model.Test.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Test.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile": {"fullname": "styx.boutiques.model.OutputFile", "modulename": "styx.boutiques.model", "qualname": "OutputFile", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.OutputFile.file_template": {"fullname": "styx.boutiques.model.OutputFile.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFile.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFile.list": {"fullname": "styx.boutiques.model.OutputFile.list", "modulename": "styx.boutiques.model", "qualname": "OutputFile.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ListModel]"}, "styx.boutiques.model.OutputFile.model_config": {"fullname": "styx.boutiques.model.OutputFile.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile.model_fields": {"fullname": "styx.boutiques.model.OutputFile.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, metadata=[MinLen(min_length=1)]), 'list': FieldInfo(annotation=Union[ListModel, NoneType], required=False)}"}, "styx.boutiques.model.OutputFile.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFile.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.FileTemplate": {"fullname": "styx.boutiques.model.FileTemplate", "modulename": "styx.boutiques.model", "qualname": "FileTemplate", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.FileTemplate.bool_False": {"fullname": "styx.boutiques.model.FileTemplate.bool_False", "modulename": "styx.boutiques.model", "qualname": "FileTemplate.bool_False", "kind": "variable", "doc": "

\n", "default_value": "<FileTemplate.bool_False: False>"}, "styx.boutiques.model.OutputFile1": {"fullname": "styx.boutiques.model.OutputFile1", "modulename": "styx.boutiques.model", "qualname": "OutputFile1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.OutputFile1.file_template": {"fullname": "styx.boutiques.model.OutputFile1.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.FileTemplate]"}, "styx.boutiques.model.OutputFile1.model_config": {"fullname": "styx.boutiques.model.OutputFile1.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile1.model_fields": {"fullname": "styx.boutiques.model.OutputFile1.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[FileTemplate, NoneType], required=False, alias='file-template', alias_priority=2)}"}, "styx.boutiques.model.OutputFile1.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFile1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ConditionalPathTemplateItem": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ConditionalPathTemplateItem.propertyNames": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.propertyNames", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.propertyNames", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_config": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_config", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_fields": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_fields", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'propertyNames': FieldInfo(annotation=Union[Any, NoneType], required=False)}"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_computed_fields": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFiles": {"fullname": "styx.boutiques.model.OutputFiles", "modulename": "styx.boutiques.model", "qualname": "OutputFiles", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "OutputFile"}, "styx.boutiques.model.OutputFiles.model_config": {"fullname": "styx.boutiques.model.OutputFiles.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.OutputFiles.id": {"fullname": "styx.boutiques.model.OutputFiles.id", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.OutputFiles.name": {"fullname": "styx.boutiques.model.OutputFiles.name", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.OutputFiles.description": {"fullname": "styx.boutiques.model.OutputFiles.description", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.value_key": {"fullname": "styx.boutiques.model.OutputFiles.value_key", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.path_template": {"fullname": "styx.boutiques.model.OutputFiles.path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.OutputFiles.conditional_path_template": {"fullname": "styx.boutiques.model.OutputFiles.conditional_path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.conditional_path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ConditionalPathTemplateItem]]"}, "styx.boutiques.model.OutputFiles.path_template_stripped_extensions": {"fullname": "styx.boutiques.model.OutputFiles.path_template_stripped_extensions", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.path_template_stripped_extensions", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles.list": {"fullname": "styx.boutiques.model.OutputFiles.list", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.optional": {"fullname": "styx.boutiques.model.OutputFiles.optional", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.command_line_flag": {"fullname": "styx.boutiques.model.OutputFiles.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.command_line_flag_separator": {"fullname": "styx.boutiques.model.OutputFiles.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.uses_absolute_path": {"fullname": "styx.boutiques.model.OutputFiles.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.file_template": {"fullname": "styx.boutiques.model.OutputFiles.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles.model_fields": {"fullname": "styx.boutiques.model.OutputFiles.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, description='An array of strings that may contain value keys. Each item will be a line in the configuration file.', metadata=[MinLen(min_length=1)]), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output is a list of value.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file"', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable output name. Example: 'Data file'", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Output description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the output value and/or flag at runtime.'), 'path_template': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='path-template', alias_priority=2, description='Describes the output file path relatively to the execution directory. May contain input value keys and wildcards. Example: "results/[INPUT1]_brain*.mnc".'), 'conditional_path_template': FieldInfo(annotation=Union[List[ConditionalPathTemplateItem], NoneType], required=False, alias='conditional-path-template', alias_priority=2, description='List of objects containing boolean statement (Limited python syntax: ==, !=, <, >, <=, >=, and, or) and output file paths relative to the execution directory, assign path of first true boolean statement. May contain input value keys, "default" object required if "optional" set to True . Example list: "[{"[PARAM1] > 8": "outputs/[INPUT1].txt"}, {"default": "outputs/default.txt"}]".', metadata=[MinLen(min_length=1)]), 'path_template_stripped_extensions': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='path-template-stripped-extensions', alias_priority=2, description='List of file extensions that will be stripped from the input values before being substituted in the path template. Example: [".nii",".nii.gz"].'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output may not be produced by the tool.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the output, involved in the value-key substitution. Examples: -o, --output'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this output filepath will be given as an absolute path.')}"}, "styx.boutiques.model.OutputFiles.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFiles.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFiles1": {"fullname": "styx.boutiques.model.OutputFiles1", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "OutputFile1"}, "styx.boutiques.model.OutputFiles1.model_config": {"fullname": "styx.boutiques.model.OutputFiles1.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.OutputFiles1.id": {"fullname": "styx.boutiques.model.OutputFiles1.id", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.OutputFiles1.name": {"fullname": "styx.boutiques.model.OutputFiles1.name", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.OutputFiles1.description": {"fullname": "styx.boutiques.model.OutputFiles1.description", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.value_key": {"fullname": "styx.boutiques.model.OutputFiles1.value_key", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.path_template": {"fullname": "styx.boutiques.model.OutputFiles1.path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.OutputFiles1.conditional_path_template": {"fullname": "styx.boutiques.model.OutputFiles1.conditional_path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.conditional_path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ConditionalPathTemplateItem]]"}, "styx.boutiques.model.OutputFiles1.path_template_stripped_extensions": {"fullname": "styx.boutiques.model.OutputFiles1.path_template_stripped_extensions", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.path_template_stripped_extensions", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles1.list": {"fullname": "styx.boutiques.model.OutputFiles1.list", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.optional": {"fullname": "styx.boutiques.model.OutputFiles1.optional", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.command_line_flag": {"fullname": "styx.boutiques.model.OutputFiles1.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.command_line_flag_separator": {"fullname": "styx.boutiques.model.OutputFiles1.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.uses_absolute_path": {"fullname": "styx.boutiques.model.OutputFiles1.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.file_template": {"fullname": "styx.boutiques.model.OutputFiles1.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles1.model_fields": {"fullname": "styx.boutiques.model.OutputFiles1.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, description='An array of strings that may contain value keys. Each item will be a line in the configuration file.', metadata=[MinLen(min_length=1)]), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file"', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable output name. Example: 'Data file'", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Output description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the output value and/or flag at runtime.'), 'path_template': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='path-template', alias_priority=2, description='Describes the output file path relatively to the execution directory. May contain input value keys and wildcards. Example: "results/[INPUT1]_brain*.mnc".'), 'conditional_path_template': FieldInfo(annotation=Union[List[ConditionalPathTemplateItem], NoneType], required=False, alias='conditional-path-template', alias_priority=2, description='List of objects containing boolean statement (Limited python syntax: ==, !=, <, >, <=, >=, and, or) and output file paths relative to the execution directory, assign path of first true boolean statement. May contain input value keys, "default" object required if "optional" set to True . Example list: "[{"[PARAM1] > 8": "outputs/[INPUT1].txt"}, {"default": "outputs/default.txt"}]".', metadata=[MinLen(min_length=1)]), 'path_template_stripped_extensions': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='path-template-stripped-extensions', alias_priority=2, description='List of file extensions that will be stripped from the input values before being substituted in the path template. Example: [".nii",".nii.gz"].'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output is a list of value.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output may not be produced by the tool.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the output, involved in the value-key substitution. Examples: -o, --output'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this output filepath will be given as an absolute path.')}"}, "styx.boutiques.model.OutputFiles1.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFiles1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.SuggestedResources": {"fullname": "styx.boutiques.model.SuggestedResources", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.SuggestedResources.cpu_cores": {"fullname": "styx.boutiques.model.SuggestedResources.cpu_cores", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.cpu_cores", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[int, None, Interval(gt=None, ge=1, lt=None, le=None), None]]"}, "styx.boutiques.model.SuggestedResources.ram": {"fullname": "styx.boutiques.model.SuggestedResources.ram", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.ram", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.disk_space": {"fullname": "styx.boutiques.model.SuggestedResources.disk_space", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.disk_space", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.nodes": {"fullname": "styx.boutiques.model.SuggestedResources.nodes", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.nodes", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[int, None, Interval(gt=None, ge=1, lt=None, le=None), None]]"}, "styx.boutiques.model.SuggestedResources.walltime_estimate": {"fullname": "styx.boutiques.model.SuggestedResources.walltime_estimate", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.walltime_estimate", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.model_config": {"fullname": "styx.boutiques.model.SuggestedResources.model_config", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.SuggestedResources.model_fields": {"fullname": "styx.boutiques.model.SuggestedResources.model_fields", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'cpu_cores': FieldInfo(annotation=Union[Annotated[int, NoneType, Interval, NoneType], NoneType], required=False, alias='cpu-cores', alias_priority=2, description='The requested number of cpu cores to run the described application'), 'ram': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, description='The requested number of GB RAM to run the described application'), 'disk_space': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, alias='disk-space', alias_priority=2, description='The requested number of GB of storage to run the described application'), 'nodes': FieldInfo(annotation=Union[Annotated[int, NoneType, Interval, NoneType], NoneType], required=False, description='The requested number of nodes to spread the described application across'), 'walltime_estimate': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, alias='walltime-estimate', alias_priority=2, description='Estimated wall time of a task in seconds.')}"}, "styx.boutiques.model.SuggestedResources.model_computed_fields": {"fullname": "styx.boutiques.model.SuggestedResources.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ErrorCode": {"fullname": "styx.boutiques.model.ErrorCode", "modulename": "styx.boutiques.model", "qualname": "ErrorCode", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ErrorCode.model_config": {"fullname": "styx.boutiques.model.ErrorCode.model_config", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ErrorCode.code": {"fullname": "styx.boutiques.model.ErrorCode.code", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.code", "kind": "variable", "doc": "

\n", "annotation": ": int"}, "styx.boutiques.model.ErrorCode.description": {"fullname": "styx.boutiques.model.ErrorCode.description", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.boutiques.model.ErrorCode.model_fields": {"fullname": "styx.boutiques.model.ErrorCode.model_fields", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'code': FieldInfo(annotation=int, required=True, description='Value of the exit code'), 'description': FieldInfo(annotation=str, required=True, description='Description of the error code.')}"}, "styx.boutiques.model.ErrorCode.model_computed_fields": {"fullname": "styx.boutiques.model.ErrorCode.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Tool": {"fullname": "styx.boutiques.model.Tool", "modulename": "styx.boutiques.model", "qualname": "Tool", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Tool.model_config": {"fullname": "styx.boutiques.model.Tool.model_config", "modulename": "styx.boutiques.model", "qualname": "Tool.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Tool.name": {"fullname": "styx.boutiques.model.Tool.name", "modulename": "styx.boutiques.model", "qualname": "Tool.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.tool_version": {"fullname": "styx.boutiques.model.Tool.tool_version", "modulename": "styx.boutiques.model", "qualname": "Tool.tool_version", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.description": {"fullname": "styx.boutiques.model.Tool.description", "modulename": "styx.boutiques.model", "qualname": "Tool.description", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.deprecated_by_doi": {"fullname": "styx.boutiques.model.Tool.deprecated_by_doi", "modulename": "styx.boutiques.model", "qualname": "Tool.deprecated_by_doi", "kind": "variable", "doc": "

\n", "annotation": ": Union[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)], bool, NoneType]"}, "styx.boutiques.model.Tool.author": {"fullname": "styx.boutiques.model.Tool.author", "modulename": "styx.boutiques.model", "qualname": "Tool.author", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.url": {"fullname": "styx.boutiques.model.Tool.url", "modulename": "styx.boutiques.model", "qualname": "Tool.url", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.descriptor_url": {"fullname": "styx.boutiques.model.Tool.descriptor_url", "modulename": "styx.boutiques.model", "qualname": "Tool.descriptor_url", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.doi": {"fullname": "styx.boutiques.model.Tool.doi", "modulename": "styx.boutiques.model", "qualname": "Tool.doi", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.shell": {"fullname": "styx.boutiques.model.Tool.shell", "modulename": "styx.boutiques.model", "qualname": "Tool.shell", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.tool_doi": {"fullname": "styx.boutiques.model.Tool.tool_doi", "modulename": "styx.boutiques.model", "qualname": "Tool.tool_doi", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.command_line": {"fullname": "styx.boutiques.model.Tool.command_line", "modulename": "styx.boutiques.model", "qualname": "Tool.command_line", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.container_image": {"fullname": "styx.boutiques.model.Tool.container_image", "modulename": "styx.boutiques.model", "qualname": "Tool.container_image", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ContainerImage]"}, "styx.boutiques.model.Tool.schema_version": {"fullname": "styx.boutiques.model.Tool.schema_version", "modulename": "styx.boutiques.model", "qualname": "Tool.schema_version", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.SchemaVersion"}, "styx.boutiques.model.Tool.environment_variables": {"fullname": "styx.boutiques.model.Tool.environment_variables", "modulename": "styx.boutiques.model", "qualname": "Tool.environment_variables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.EnvironmentVariable]]"}, "styx.boutiques.model.Tool.groups": {"fullname": "styx.boutiques.model.Tool.groups", "modulename": "styx.boutiques.model", "qualname": "Tool.groups", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.Group]]"}, "styx.boutiques.model.Tool.inputs": {"fullname": "styx.boutiques.model.Tool.inputs", "modulename": "styx.boutiques.model", "qualname": "Tool.inputs", "kind": "variable", "doc": "

\n", "annotation": ": List[Union[styx.boutiques.model.Inputs, styx.boutiques.model.Inputs1]]"}, "styx.boutiques.model.Tool.tests": {"fullname": "styx.boutiques.model.Tool.tests", "modulename": "styx.boutiques.model", "qualname": "Tool.tests", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.Test]]"}, "styx.boutiques.model.Tool.online_platform_urls": {"fullname": "styx.boutiques.model.Tool.online_platform_urls", "modulename": "styx.boutiques.model", "qualname": "Tool.online_platform_urls", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern='^https?://')]]]"}, "styx.boutiques.model.Tool.output_files": {"fullname": "styx.boutiques.model.Tool.output_files", "modulename": "styx.boutiques.model", "qualname": "Tool.output_files", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[styx.boutiques.model.OutputFiles, styx.boutiques.model.OutputFiles1]]]"}, "styx.boutiques.model.Tool.invocation_schema": {"fullname": "styx.boutiques.model.Tool.invocation_schema", "modulename": "styx.boutiques.model", "qualname": "Tool.invocation_schema", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Tool.suggested_resources": {"fullname": "styx.boutiques.model.Tool.suggested_resources", "modulename": "styx.boutiques.model", "qualname": "Tool.suggested_resources", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.SuggestedResources]"}, "styx.boutiques.model.Tool.tags": {"fullname": "styx.boutiques.model.Tool.tags", "modulename": "styx.boutiques.model", "qualname": "Tool.tags", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, List[str]]]"}, "styx.boutiques.model.Tool.error_codes": {"fullname": "styx.boutiques.model.Tool.error_codes", "modulename": "styx.boutiques.model", "qualname": "Tool.error_codes", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ErrorCode]]"}, "styx.boutiques.model.Tool.custom": {"fullname": "styx.boutiques.model.Tool.custom", "modulename": "styx.boutiques.model", "qualname": "Tool.custom", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Tool.model_fields": {"fullname": "styx.boutiques.model.Tool.model_fields", "modulename": "styx.boutiques.model", "qualname": "Tool.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='Tool name.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'tool_version': FieldInfo(annotation=str, required=True, alias='tool-version', alias_priority=2, description='Tool version.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=str, required=True, description='Tool description.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'deprecated_by_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], bool, NoneType], required=False, alias='deprecated-by-doi', alias_priority=2, description="doi of the tool that deprecates the current one. May be set to 'true' if the current tool is deprecated but no specific tool deprecates it."), 'author': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool author name(s).'), 'url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool URL.'), 'descriptor_url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='descriptor-url', alias_priority=2, description='Link to the descriptor itself (e.g. the GitHub repo where it is hosted).'), 'doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='DOI of the descriptor (not of the tool itself).'), 'shell': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Absolute path of the shell interpreter to use in the container (defaults to /bin/sh).'), 'tool_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='tool-doi', alias_priority=2, description='DOI of the tool (not of the descriptor).'), 'command_line': FieldInfo(annotation=str, required=True, alias='command-line', alias_priority=2, description='A string that describes the tool command line, where input and output values are identified by "keys". At runtime, command-line keys are substituted with flags and values.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'container_image': FieldInfo(annotation=Union[ContainerImage, NoneType], required=False, alias='container-image', alias_priority=2), 'schema_version': FieldInfo(annotation=SchemaVersion, required=True, alias='schema-version', alias_priority=2, description='Version of the schema used.'), 'environment_variables': FieldInfo(annotation=Union[List[EnvironmentVariable], NoneType], required=False, alias='environment-variables', alias_priority=2, description='An array of key-value pairs specifying environment variable names and their values to be used in the execution environment.', metadata=[MinLen(min_length=1)]), 'groups': FieldInfo(annotation=Union[List[Group], NoneType], required=False, description='Sets of identifiers of inputs, each specifying an input group.', metadata=[MinLen(min_length=1)]), 'inputs': FieldInfo(annotation=List[Union[Inputs, Inputs1]], required=True, metadata=[MinLen(min_length=1)]), 'tests': FieldInfo(annotation=Union[List[Test], NoneType], required=False, metadata=[MinLen(min_length=1)]), 'online_platform_urls': FieldInfo(annotation=Union[List[Annotated[str, StringConstraints]], NoneType], required=False, alias='online-platform-urls', alias_priority=2, description='Online platform URLs from which the tool can be executed.'), 'output_files': FieldInfo(annotation=Union[List[Union[OutputFiles, OutputFiles1]], NoneType], required=False, alias='output-files', alias_priority=2, metadata=[MinLen(min_length=1)]), 'invocation_schema': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='invocation-schema', alias_priority=2), 'suggested_resources': FieldInfo(annotation=Union[SuggestedResources, NoneType], required=False, alias='suggested-resources', alias_priority=2), 'tags': FieldInfo(annotation=Union[Dict[str, List[str]], NoneType], required=False, description='A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.'), 'error_codes': FieldInfo(annotation=Union[List[ErrorCode], NoneType], required=False, alias='error-codes', alias_priority=2, description='An array of key-value pairs specifying exit codes and their description. Can be used for tools to specify the meaning of particular exit codes. Exit code 0 is assumed to indicate a successful execution.', metadata=[MinLen(min_length=1)]), 'custom': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False)}"}, "styx.boutiques.model.Tool.model_computed_fields": {"fullname": "styx.boutiques.model.Tool.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Tool.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.utils": {"fullname": "styx.boutiques.utils", "modulename": "styx.boutiques.utils", "kind": "module", "doc": "

\n"}, "styx.boutiques.utils.boutiques_from_dict": {"fullname": "styx.boutiques.utils.boutiques_from_dict", "modulename": "styx.boutiques.utils", "qualname": "boutiques_from_dict", "kind": "function", "doc": "

Create a Boutiques model from a dictionary.

\n\n
Arguments:
\n\n
    \n
  • data (dict): The dictionary.
    • \n
\n\n
Returns:
\n\n
\n

styx.boutiques.model.Tool: The Boutiques model.

\n
\n", "signature": "(data: dict) -> styx.boutiques.model.Tool:", "funcdef": "def"}, "styx.boutiques.utils.boutiques_split_command": {"fullname": "styx.boutiques.utils.boutiques_split_command", "modulename": "styx.boutiques.utils", "qualname": "boutiques_split_command", "kind": "function", "doc": "

Split a Boutiques command into a list of arguments.

\n\n
Arguments:
\n\n
    \n
  • command (str): The Boutiques command.
    • \n
\n\n
Returns:
\n\n
\n

list[str]: The list of arguments.

\n
\n", "signature": "(command: str) -> list[str]:", "funcdef": "def"}, "styx.compiler": {"fullname": "styx.compiler", "modulename": "styx.compiler", "kind": "module", "doc": "

Boutiques to python compiler.

\n"}, "styx.compiler.compile": {"fullname": "styx.compiler.compile", "modulename": "styx.compiler.compile", "kind": "module", "doc": "

Compilation of Styx data model to Python code.

\n"}, "styx.compiler.compile.common": {"fullname": "styx.compiler.compile.common", "modulename": "styx.compiler.compile.common", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.common.SharedScopes": {"fullname": "styx.compiler.compile.common.SharedScopes", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes", "kind": "class", "doc": "

\n"}, "styx.compiler.compile.common.SharedScopes.__init__": {"fullname": "styx.compiler.compile.common.SharedScopes.__init__", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.__init__", "kind": "function", "doc": "

\n", "signature": "(\tmodule: styx.pycodegen.scope.Scope,\tfunction: styx.pycodegen.scope.Scope,\toutput_tuple: styx.pycodegen.scope.Scope)"}, "styx.compiler.compile.common.SharedScopes.module": {"fullname": "styx.compiler.compile.common.SharedScopes.module", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.module", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedScopes.function": {"fullname": "styx.compiler.compile.common.SharedScopes.function", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.function", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedScopes.output_tuple": {"fullname": "styx.compiler.compile.common.SharedScopes.output_tuple", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.output_tuple", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedSymbols": {"fullname": "styx.compiler.compile.common.SharedSymbols", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols", "kind": "class", "doc": "

\n"}, "styx.compiler.compile.common.SharedSymbols.__init__": {"fullname": "styx.compiler.compile.common.SharedSymbols.__init__", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.__init__", "kind": "function", "doc": "

\n", "signature": "(\tfunction: str,\toutput_class: str,\tmetadata: str,\trunner: str,\texecution: str,\tcargs: str,\tret: str)"}, "styx.compiler.compile.common.SharedSymbols.function": {"fullname": "styx.compiler.compile.common.SharedSymbols.function", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.function", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.output_class": {"fullname": "styx.compiler.compile.common.SharedSymbols.output_class", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.output_class", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.metadata": {"fullname": "styx.compiler.compile.common.SharedSymbols.metadata", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.metadata", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.runner": {"fullname": "styx.compiler.compile.common.SharedSymbols.runner", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.runner", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.execution": {"fullname": "styx.compiler.compile.common.SharedSymbols.execution", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.execution", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.cargs": {"fullname": "styx.compiler.compile.common.SharedSymbols.cargs", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.cargs", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.ret": {"fullname": "styx.compiler.compile.common.SharedSymbols.ret", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.ret", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.constraints": {"fullname": "styx.compiler.compile.constraints", "modulename": "styx.compiler.compile.constraints", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.constraints.generate_input_constraint_validation": {"fullname": "styx.compiler.compile.constraints.generate_input_constraint_validation", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_input_constraint_validation", "kind": "function", "doc": "

Generate input constraint validation code for an input argument.

\n", "signature": "(\tbuf: list[str],\tinput_: styx.model.core.WithSymbol[styx.model.core.InputArgument]) -> None:", "funcdef": "def"}, "styx.compiler.compile.constraints.generate_group_constraint_validation": {"fullname": "styx.compiler.compile.constraints.generate_group_constraint_validation", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_group_constraint_validation", "kind": "function", "doc": "

\n", "signature": "(\tbuf: list[str],\tgroup: styx.model.core.GroupConstraint,\targs_lookup: dict[str, styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.constraints.generate_constraint_checks": {"fullname": "styx.compiler.compile.constraints.generate_constraint_checks", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_constraint_checks", "kind": "function", "doc": "

\n", "signature": "(\tfunc: styx.pycodegen.core.PyFunc,\tdescriptor: styx.model.core.Descriptor,\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.definitions": {"fullname": "styx.compiler.compile.definitions", "modulename": "styx.compiler.compile.definitions", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.definitions.compile_definitions": {"fullname": "styx.compiler.compile.definitions.compile_definitions", "modulename": "styx.compiler.compile.definitions", "qualname": "compile_definitions", "kind": "function", "doc": "

Compile the definitions to Python code.

\n", "signature": "() -> str:", "funcdef": "def"}, "styx.compiler.compile.definitions.generate_definitions": {"fullname": "styx.compiler.compile.definitions.generate_definitions", "modulename": "styx.compiler.compile.definitions", "qualname": "generate_definitions", "kind": "function", "doc": "

Generate the definition code in the header.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tsettings: styx.compiler.settings.CompilerSettings) -> None:", "funcdef": "def"}, "styx.compiler.compile.descriptor": {"fullname": "styx.compiler.compile.descriptor", "modulename": "styx.compiler.compile.descriptor", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.descriptor.compile_descriptor": {"fullname": "styx.compiler.compile.descriptor.compile_descriptor", "modulename": "styx.compiler.compile.descriptor", "qualname": "compile_descriptor", "kind": "function", "doc": "

Compile a descriptor to Python code.

\n", "signature": "(\tdescriptor: styx.model.core.Descriptor,\tsettings: styx.compiler.settings.CompilerSettings) -> str:", "funcdef": "def"}, "styx.compiler.compile.inputs": {"fullname": "styx.compiler.compile.inputs", "modulename": "styx.compiler.compile.inputs", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.inputs.build_input_arguments": {"fullname": "styx.compiler.compile.inputs.build_input_arguments", "modulename": "styx.compiler.compile.inputs", "qualname": "build_input_arguments", "kind": "function", "doc": "

Build Python function arguments from input arguments.

\n", "signature": "(\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> list[styx.pycodegen.core.PyArg]:", "funcdef": "def"}, "styx.compiler.compile.inputs.generate_command_line_args_building": {"fullname": "styx.compiler.compile.inputs.generate_command_line_args_building", "modulename": "styx.compiler.compile.inputs", "qualname": "generate_command_line_args_building", "kind": "function", "doc": "

Generate the command line arguments building code.

\n", "signature": "(\tdescriptor: styx.model.core.Descriptor,\tsymbols: styx.compiler.compile.common.SharedSymbols,\tfunc: styx.pycodegen.core.PyFunc,\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.metadata": {"fullname": "styx.compiler.compile.metadata", "modulename": "styx.compiler.compile.metadata", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.metadata.generate_static_metadata": {"fullname": "styx.compiler.compile.metadata.generate_static_metadata", "modulename": "styx.compiler.compile.metadata", "qualname": "generate_static_metadata", "kind": "function", "doc": "

Generate the static metadata.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tdescriptor: styx.model.core.Descriptor,\tsymbols: styx.compiler.compile.common.SharedSymbols) -> None:", "funcdef": "def"}, "styx.compiler.compile.outputs": {"fullname": "styx.compiler.compile.outputs", "modulename": "styx.compiler.compile.outputs", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.outputs.generate_outputs_definition": {"fullname": "styx.compiler.compile.outputs.generate_outputs_definition", "modulename": "styx.compiler.compile.outputs", "qualname": "generate_outputs_definition", "kind": "function", "doc": "

Generate the static output class definition.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tsymbols: styx.compiler.compile.common.SharedSymbols,\toutputs: list[styx.model.core.WithSymbol[styx.model.core.OutputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.outputs.generate_output_building": {"fullname": "styx.compiler.compile.outputs.generate_output_building", "modulename": "styx.compiler.compile.outputs", "qualname": "generate_output_building", "kind": "function", "doc": "

Generate the output building code.

\n", "signature": "(\tfunc: styx.pycodegen.core.PyFunc,\tscopes: styx.compiler.compile.common.SharedScopes,\tsymbols: styx.compiler.compile.common.SharedSymbols,\toutputs: list[styx.model.core.WithSymbol[styx.model.core.OutputArgument]],\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.core": {"fullname": "styx.compiler.core", "modulename": "styx.compiler.core", "kind": "module", "doc": "

\n"}, "styx.compiler.core.compile_boutiques_dict": {"fullname": "styx.compiler.core.compile_boutiques_dict", "modulename": "styx.compiler.core", "qualname": "compile_boutiques_dict", "kind": "function", "doc": "

\n", "signature": "(\tboutiques_descriptor: dict,\tsettings: styx.compiler.settings.CompilerSettings) -> str:", "funcdef": "def"}, "styx.compiler.settings": {"fullname": "styx.compiler.settings", "modulename": "styx.compiler.settings", "kind": "module", "doc": "

Compiler settings.

\n"}, "styx.compiler.settings.DefsMode": {"fullname": "styx.compiler.settings.DefsMode", "modulename": "styx.compiler.settings", "qualname": "DefsMode", "kind": "class", "doc": "

Runtime definitions mode.

\n", "bases": "enum.Enum"}, "styx.compiler.settings.DefsMode.INLINE": {"fullname": "styx.compiler.settings.DefsMode.INLINE", "modulename": "styx.compiler.settings", "qualname": "DefsMode.INLINE", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.INLINE: 0>"}, "styx.compiler.settings.DefsMode.IMPORT": {"fullname": "styx.compiler.settings.DefsMode.IMPORT", "modulename": "styx.compiler.settings", "qualname": "DefsMode.IMPORT", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.IMPORT: 1>"}, "styx.compiler.settings.DefsMode.DEFS_ONLY": {"fullname": "styx.compiler.settings.DefsMode.DEFS_ONLY", "modulename": "styx.compiler.settings", "qualname": "DefsMode.DEFS_ONLY", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.DEFS_ONLY: 2>"}, "styx.compiler.settings.CompilerSettings": {"fullname": "styx.compiler.settings.CompilerSettings", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings", "kind": "class", "doc": "

Compiler settings.

\n"}, "styx.compiler.settings.CompilerSettings.__init__": {"fullname": "styx.compiler.settings.CompilerSettings.__init__", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.__init__", "kind": "function", "doc": "

\n", "signature": "(\tinput_path: pathlib.Path | None = None,\toutput_path: pathlib.Path | None = None,\tdefs_module_path: str | None = None,\tdefs_mode: styx.compiler.settings.DefsMode = <DefsMode.IMPORT: 1>)"}, "styx.compiler.settings.CompilerSettings.input_path": {"fullname": "styx.compiler.settings.CompilerSettings.input_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.input_path", "kind": "variable", "doc": "

\n", "annotation": ": pathlib.Path | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.output_path": {"fullname": "styx.compiler.settings.CompilerSettings.output_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.output_path", "kind": "variable", "doc": "

\n", "annotation": ": pathlib.Path | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.defs_module_path": {"fullname": "styx.compiler.settings.CompilerSettings.defs_module_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.defs_module_path", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.defs_mode": {"fullname": "styx.compiler.settings.CompilerSettings.defs_mode", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.defs_mode", "kind": "variable", "doc": "

\n", "annotation": ": styx.compiler.settings.DefsMode", "default_value": "<DefsMode.IMPORT: 1>"}, "styx.compiler.utils": {"fullname": "styx.compiler.utils", "modulename": "styx.compiler.utils", "kind": "module", "doc": "

Compiler utilities.

\n"}, "styx.compiler.utils.optional_float_to_int": {"fullname": "styx.compiler.utils.optional_float_to_int", "modulename": "styx.compiler.utils", "qualname": "optional_float_to_int", "kind": "function", "doc": "

Convert an optional float to an optional int.

\n", "signature": "(value: float | None) -> int | None:", "funcdef": "def"}, "styx.main": {"fullname": "styx.main", "modulename": "styx.main", "kind": "module", "doc": "

\n"}, "styx.main.load_settings_from_toml": {"fullname": "styx.main.load_settings_from_toml", "modulename": "styx.main", "qualname": "load_settings_from_toml", "kind": "function", "doc": "

Load settings from a TOML file.

\n", "signature": "(\tconfig_path: pathlib.Path,\toverride_input_folder: pathlib.Path | None = None,\toverride_output_folder: pathlib.Path | None = None) -> styx.compiler.settings.CompilerSettings:", "funcdef": "def"}, "styx.main.collect_settings": {"fullname": "styx.main.collect_settings", "modulename": "styx.main", "qualname": "collect_settings", "kind": "function", "doc": "

Collect settings.

\n", "signature": "(\twork_dir: pathlib.Path,\toverride_input_folder: pathlib.Path | None = None,\toverride_output_folder: pathlib.Path | None = None,\toverride_config_file: pathlib.Path | None = None) -> styx.compiler.settings.CompilerSettings:", "funcdef": "def"}, "styx.main.main": {"fullname": "styx.main.main", "modulename": "styx.main", "qualname": "main", "kind": "function", "doc": "

Main entry point.

\n", "signature": "() -> None:", "funcdef": "def"}, "styx.model": {"fullname": "styx.model", "modulename": "styx.model", "kind": "module", "doc": "

Styx data model.

\n"}, "styx.model.core": {"fullname": "styx.model.core", "modulename": "styx.model.core", "kind": "module", "doc": "

\n"}, "styx.model.core.TYPE_INPUT_VALUE_PRIMITIVE": {"fullname": "styx.model.core.TYPE_INPUT_VALUE_PRIMITIVE", "modulename": "styx.model.core", "qualname": "TYPE_INPUT_VALUE_PRIMITIVE", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "str | float | int | bool | pathlib.Path"}, "styx.model.core.TYPE_INPUT_VALUE": {"fullname": "styx.model.core.TYPE_INPUT_VALUE", "modulename": "styx.model.core", "qualname": "TYPE_INPUT_VALUE", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType]"}, "styx.model.core.TYPE_METADATA": {"fullname": "styx.model.core.TYPE_METADATA", "modulename": "styx.model.core", "qualname": "TYPE_METADATA", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "Mapping[str, str | int | float]"}, "styx.model.core.InputTypePrimitive": {"fullname": "styx.model.core.InputTypePrimitive", "modulename": "styx.model.core", "qualname": "InputTypePrimitive", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.model.core.InputTypePrimitive.String": {"fullname": "styx.model.core.InputTypePrimitive.String", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.String", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.String: 1>"}, "styx.model.core.InputTypePrimitive.Number": {"fullname": "styx.model.core.InputTypePrimitive.Number", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Number", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Number: 2>"}, "styx.model.core.InputTypePrimitive.Integer": {"fullname": "styx.model.core.InputTypePrimitive.Integer", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Integer", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Integer: 3>"}, "styx.model.core.InputTypePrimitive.File": {"fullname": "styx.model.core.InputTypePrimitive.File", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.File", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.File: 4>"}, "styx.model.core.InputTypePrimitive.Flag": {"fullname": "styx.model.core.InputTypePrimitive.Flag", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Flag", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Flag: 5>"}, "styx.model.core.InputType": {"fullname": "styx.model.core.InputType", "modulename": "styx.model.core", "qualname": "InputType", "kind": "class", "doc": "

\n"}, "styx.model.core.InputType.__init__": {"fullname": "styx.model.core.InputType.__init__", "modulename": "styx.model.core", "qualname": "InputType.__init__", "kind": "function", "doc": "

\n", "signature": "(\tprimitive: styx.model.core.InputTypePrimitive,\tis_list: bool = False,\tis_optional: bool = False,\tis_enum: bool = False)"}, "styx.model.core.InputType.primitive": {"fullname": "styx.model.core.InputType.primitive", "modulename": "styx.model.core", "qualname": "InputType.primitive", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputTypePrimitive"}, "styx.model.core.InputType.is_list": {"fullname": "styx.model.core.InputType.is_list", "modulename": "styx.model.core", "qualname": "InputType.is_list", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputType.is_optional": {"fullname": "styx.model.core.InputType.is_optional", "modulename": "styx.model.core", "qualname": "InputType.is_optional", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputType.is_enum": {"fullname": "styx.model.core.InputType.is_enum", "modulename": "styx.model.core", "qualname": "InputType.is_enum", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints": {"fullname": "styx.model.core.InputArgumentConstraints", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints", "kind": "class", "doc": "

\n"}, "styx.model.core.InputArgumentConstraints.__init__": {"fullname": "styx.model.core.InputArgumentConstraints.__init__", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.__init__", "kind": "function", "doc": "

\n", "signature": "(\tvalue_min: float | int | None = None,\tvalue_min_exclusive: bool = False,\tvalue_max: float | int | None = None,\tvalue_max_exclusive: bool = False,\tlist_length_min: int | None = None,\tlist_length_max: int | None = None)"}, "styx.model.core.InputArgumentConstraints.value_min": {"fullname": "styx.model.core.InputArgumentConstraints.value_min", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_min", "kind": "variable", "doc": "

\n", "annotation": ": float | int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.value_min_exclusive": {"fullname": "styx.model.core.InputArgumentConstraints.value_min_exclusive", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_min_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints.value_max": {"fullname": "styx.model.core.InputArgumentConstraints.value_max", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_max", "kind": "variable", "doc": "

\n", "annotation": ": float | int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.value_max_exclusive": {"fullname": "styx.model.core.InputArgumentConstraints.value_max_exclusive", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_max_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints.list_length_min": {"fullname": "styx.model.core.InputArgumentConstraints.list_length_min", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.list_length_min", "kind": "variable", "doc": "

\n", "annotation": ": int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.list_length_max": {"fullname": "styx.model.core.InputArgumentConstraints.list_length_max", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.list_length_max", "kind": "variable", "doc": "

\n", "annotation": ": int | None", "default_value": "None"}, "styx.model.core.InputArgument": {"fullname": "styx.model.core.InputArgument", "modulename": "styx.model.core", "qualname": "InputArgument", "kind": "class", "doc": "

\n"}, "styx.model.core.InputArgument.__init__": {"fullname": "styx.model.core.InputArgument.__init__", "modulename": "styx.model.core", "qualname": "InputArgument.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\ttype: styx.model.core.InputType,\tdescription: str,\tconstraints: styx.model.core.InputArgumentConstraints,\thas_default_value: bool = False,\tdefault_value: Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType] = None,\tcommand_line_flag: str | None = None,\tlist_separator: str | None = None,\tenum_values: list[str | float | int | bool | pathlib.Path] | None = None,\tbt_ref: str | None = None)"}, "styx.model.core.InputArgument.name": {"fullname": "styx.model.core.InputArgument.name", "modulename": "styx.model.core", "qualname": "InputArgument.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.InputArgument.type": {"fullname": "styx.model.core.InputArgument.type", "modulename": "styx.model.core", "qualname": "InputArgument.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputType"}, "styx.model.core.InputArgument.description": {"fullname": "styx.model.core.InputArgument.description", "modulename": "styx.model.core", "qualname": "InputArgument.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.InputArgument.constraints": {"fullname": "styx.model.core.InputArgument.constraints", "modulename": "styx.model.core", "qualname": "InputArgument.constraints", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputArgumentConstraints"}, "styx.model.core.InputArgument.has_default_value": {"fullname": "styx.model.core.InputArgument.has_default_value", "modulename": "styx.model.core", "qualname": "InputArgument.has_default_value", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgument.default_value": {"fullname": "styx.model.core.InputArgument.default_value", "modulename": "styx.model.core", "qualname": "InputArgument.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType]", "default_value": "None"}, "styx.model.core.InputArgument.command_line_flag": {"fullname": "styx.model.core.InputArgument.command_line_flag", "modulename": "styx.model.core", "qualname": "InputArgument.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.InputArgument.list_separator": {"fullname": "styx.model.core.InputArgument.list_separator", "modulename": "styx.model.core", "qualname": "InputArgument.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.InputArgument.enum_values": {"fullname": "styx.model.core.InputArgument.enum_values", "modulename": "styx.model.core", "qualname": "InputArgument.enum_values", "kind": "variable", "doc": "

\n", "annotation": ": list[str | float | int | bool | pathlib.Path] | None", "default_value": "None"}, "styx.model.core.InputArgument.bt_ref": {"fullname": "styx.model.core.InputArgument.bt_ref", "modulename": "styx.model.core", "qualname": "InputArgument.bt_ref", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.OutputArgument": {"fullname": "styx.model.core.OutputArgument", "modulename": "styx.model.core", "qualname": "OutputArgument", "kind": "class", "doc": "

\n"}, "styx.model.core.OutputArgument.__init__": {"fullname": "styx.model.core.OutputArgument.__init__", "modulename": "styx.model.core", "qualname": "OutputArgument.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\tdescription: str,\tpath_template: str,\toptional: bool = False,\tstripped_file_extensions: list[str] | None = None)"}, "styx.model.core.OutputArgument.name": {"fullname": "styx.model.core.OutputArgument.name", "modulename": "styx.model.core", "qualname": "OutputArgument.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.description": {"fullname": "styx.model.core.OutputArgument.description", "modulename": "styx.model.core", "qualname": "OutputArgument.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.path_template": {"fullname": "styx.model.core.OutputArgument.path_template", "modulename": "styx.model.core", "qualname": "OutputArgument.path_template", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.optional": {"fullname": "styx.model.core.OutputArgument.optional", "modulename": "styx.model.core", "qualname": "OutputArgument.optional", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.OutputArgument.stripped_file_extensions": {"fullname": "styx.model.core.OutputArgument.stripped_file_extensions", "modulename": "styx.model.core", "qualname": "OutputArgument.stripped_file_extensions", "kind": "variable", "doc": "

\n", "annotation": ": list[str] | None", "default_value": "None"}, "styx.model.core.GroupConstraint": {"fullname": "styx.model.core.GroupConstraint", "modulename": "styx.model.core", "qualname": "GroupConstraint", "kind": "class", "doc": "

\n"}, "styx.model.core.GroupConstraint.__init__": {"fullname": "styx.model.core.GroupConstraint.__init__", "modulename": "styx.model.core", "qualname": "GroupConstraint.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\tdescription: str,\tmembers: list[str],\tmembers_mutually_exclusive: bool = False,\tmembers_must_include_one: bool = False,\tmembers_must_include_all_or_none: bool = False)"}, "styx.model.core.GroupConstraint.name": {"fullname": "styx.model.core.GroupConstraint.name", "modulename": "styx.model.core", "qualname": "GroupConstraint.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.GroupConstraint.description": {"fullname": "styx.model.core.GroupConstraint.description", "modulename": "styx.model.core", "qualname": "GroupConstraint.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.GroupConstraint.members": {"fullname": "styx.model.core.GroupConstraint.members", "modulename": "styx.model.core", "qualname": "GroupConstraint.members", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.model.core.GroupConstraint.members_mutually_exclusive": {"fullname": "styx.model.core.GroupConstraint.members_mutually_exclusive", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_mutually_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.GroupConstraint.members_must_include_one": {"fullname": "styx.model.core.GroupConstraint.members_must_include_one", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_must_include_one", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.GroupConstraint.members_must_include_all_or_none": {"fullname": "styx.model.core.GroupConstraint.members_must_include_all_or_none", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_must_include_all_or_none", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.Descriptor": {"fullname": "styx.model.core.Descriptor", "modulename": "styx.model.core", "qualname": "Descriptor", "kind": "class", "doc": "

\n"}, "styx.model.core.Descriptor.__init__": {"fullname": "styx.model.core.Descriptor.__init__", "modulename": "styx.model.core", "qualname": "Descriptor.__init__", "kind": "function", "doc": "

\n", "signature": "(\thash: str,\tname: str,\tdescription: str,\tinput_command_line_template: str,\tinputs: list[styx.model.core.InputArgument],\toutputs: list[styx.model.core.OutputArgument],\tgroup_constraints: list[styx.model.core.GroupConstraint],\tmetadata: Mapping[str, str | int | float])"}, "styx.model.core.Descriptor.hash": {"fullname": "styx.model.core.Descriptor.hash", "modulename": "styx.model.core", "qualname": "Descriptor.hash", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.name": {"fullname": "styx.model.core.Descriptor.name", "modulename": "styx.model.core", "qualname": "Descriptor.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.description": {"fullname": "styx.model.core.Descriptor.description", "modulename": "styx.model.core", "qualname": "Descriptor.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.input_command_line_template": {"fullname": "styx.model.core.Descriptor.input_command_line_template", "modulename": "styx.model.core", "qualname": "Descriptor.input_command_line_template", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.inputs": {"fullname": "styx.model.core.Descriptor.inputs", "modulename": "styx.model.core", "qualname": "Descriptor.inputs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.InputArgument]"}, "styx.model.core.Descriptor.outputs": {"fullname": "styx.model.core.Descriptor.outputs", "modulename": "styx.model.core", "qualname": "Descriptor.outputs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.OutputArgument]"}, "styx.model.core.Descriptor.group_constraints": {"fullname": "styx.model.core.Descriptor.group_constraints", "modulename": "styx.model.core", "qualname": "Descriptor.group_constraints", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.GroupConstraint]"}, "styx.model.core.Descriptor.metadata": {"fullname": "styx.model.core.Descriptor.metadata", "modulename": "styx.model.core", "qualname": "Descriptor.metadata", "kind": "variable", "doc": "

\n", "annotation": ": Mapping[str, str | int | float]"}, "styx.model.core.WithSymbol": {"fullname": "styx.model.core.WithSymbol", "modulename": "styx.model.core", "qualname": "WithSymbol", "kind": "class", "doc": "

\n", "bases": "typing.Generic[~T]"}, "styx.model.core.WithSymbol.__init__": {"fullname": "styx.model.core.WithSymbol.__init__", "modulename": "styx.model.core", "qualname": "WithSymbol.__init__", "kind": "function", "doc": "

\n", "signature": "(data: ~T, symbol: str)"}, "styx.model.core.WithSymbol.data": {"fullname": "styx.model.core.WithSymbol.data", "modulename": "styx.model.core", "qualname": "WithSymbol.data", "kind": "variable", "doc": "

\n", "annotation": ": ~T"}, "styx.model.core.WithSymbol.symbol": {"fullname": "styx.model.core.WithSymbol.symbol", "modulename": "styx.model.core", "qualname": "WithSymbol.symbol", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.from_boutiques": {"fullname": "styx.model.from_boutiques", "modulename": "styx.model.from_boutiques", "kind": "module", "doc": "

\n"}, "styx.model.from_boutiques.descriptor_from_boutiques": {"fullname": "styx.model.from_boutiques.descriptor_from_boutiques", "modulename": "styx.model.from_boutiques", "qualname": "descriptor_from_boutiques", "kind": "function", "doc": "

Convert a Boutiques tool to a Styx descriptor.

\n", "signature": "(tool: styx.boutiques.model.Tool) -> styx.model.core.Descriptor:", "funcdef": "def"}, "styx.pycodegen": {"fullname": "styx.pycodegen", "modulename": "styx.pycodegen", "kind": "module", "doc": "

Generic Python code generation utilities. Implemented on demand.

\n"}, "styx.pycodegen.core": {"fullname": "styx.pycodegen.core", "modulename": "styx.pycodegen.core", "kind": "module", "doc": "

Generic Python code generation utilities. Implemented on demand.

\n"}, "styx.pycodegen.core.LineBuffer": {"fullname": "styx.pycodegen.core.LineBuffer", "modulename": "styx.pycodegen.core", "qualname": "LineBuffer", "kind": "variable", "doc": "

\n", "default_value": "list[str]"}, "styx.pycodegen.core.INDENT": {"fullname": "styx.pycodegen.core.INDENT", "modulename": "styx.pycodegen.core", "qualname": "INDENT", "kind": "variable", "doc": "

\n", "default_value": "' '"}, "styx.pycodegen.core.indent": {"fullname": "styx.pycodegen.core.indent", "modulename": "styx.pycodegen.core", "qualname": "indent", "kind": "function", "doc": "

Indent a LineBuffer by a given level.

\n", "signature": "(lines: list[str], level: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.comment": {"fullname": "styx.pycodegen.core.comment", "modulename": "styx.pycodegen.core", "qualname": "comment", "kind": "function", "doc": "

Add a comment to a LineBuffer.

\n", "signature": "(lines: list[str]) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.collapse": {"fullname": "styx.pycodegen.core.collapse", "modulename": "styx.pycodegen.core", "qualname": "collapse", "kind": "function", "doc": "

Collapse a LineBuffer into a single string.

\n", "signature": "(lines: list[str]) -> str:", "funcdef": "def"}, "styx.pycodegen.core.expand": {"fullname": "styx.pycodegen.core.expand", "modulename": "styx.pycodegen.core", "qualname": "expand", "kind": "function", "doc": "

Expand a string into a LineBuffer.

\n", "signature": "(text: str) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.concat": {"fullname": "styx.pycodegen.core.concat", "modulename": "styx.pycodegen.core", "qualname": "concat", "kind": "function", "doc": "

Concatenate multiple LineBuffers.

\n", "signature": "(line_buffers: list[list[str]]) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.blank_before": {"fullname": "styx.pycodegen.core.blank_before", "modulename": "styx.pycodegen.core", "qualname": "blank_before", "kind": "function", "doc": "

Add blank lines at the beginning of a LineBuffer if it is not empty.

\n", "signature": "(lines: list[str], blanks: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.blank_after": {"fullname": "styx.pycodegen.core.blank_after", "modulename": "styx.pycodegen.core", "qualname": "blank_after", "kind": "function", "doc": "

Add blank lines at the end of a LineBuffer if it is not empty.

\n", "signature": "(lines: list[str], blanks: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyGen": {"fullname": "styx.pycodegen.core.PyGen", "modulename": "styx.pycodegen.core", "qualname": "PyGen", "kind": "class", "doc": "

Helper class that provides a standard way to create an ABC using\ninheritance.

\n", "bases": "abc.ABC"}, "styx.pycodegen.core.PyGen.generate": {"fullname": "styx.pycodegen.core.PyGen.generate", "modulename": "styx.pycodegen.core", "qualname": "PyGen.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyGen.text": {"fullname": "styx.pycodegen.core.PyGen.text", "modulename": "styx.pycodegen.core", "qualname": "PyGen.text", "kind": "function", "doc": "

Generate the code and collapse it into a single string.

\n", "signature": "(self) -> str:", "funcdef": "def"}, "styx.pycodegen.core.PyArg": {"fullname": "styx.pycodegen.core.PyArg", "modulename": "styx.pycodegen.core", "qualname": "PyArg", "kind": "class", "doc": "

Python function argument.

\n"}, "styx.pycodegen.core.PyArg.__init__": {"fullname": "styx.pycodegen.core.PyArg.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyArg.__init__", "kind": "function", "doc": "

\n", "signature": "(name: str, type: str, default: str | None, docstring: str)"}, "styx.pycodegen.core.PyArg.name": {"fullname": "styx.pycodegen.core.PyArg.name", "modulename": "styx.pycodegen.core", "qualname": "PyArg.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyArg.type": {"fullname": "styx.pycodegen.core.PyArg.type", "modulename": "styx.pycodegen.core", "qualname": "PyArg.type", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyArg.default": {"fullname": "styx.pycodegen.core.PyArg.default", "modulename": "styx.pycodegen.core", "qualname": "PyArg.default", "kind": "variable", "doc": "

\n", "annotation": ": str | None"}, "styx.pycodegen.core.PyArg.docstring": {"fullname": "styx.pycodegen.core.PyArg.docstring", "modulename": "styx.pycodegen.core", "qualname": "PyArg.docstring", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyFunc": {"fullname": "styx.pycodegen.core.PyFunc", "modulename": "styx.pycodegen.core", "qualname": "PyFunc", "kind": "class", "doc": "

Python function.

\n", "bases": "PyGen"}, "styx.pycodegen.core.PyFunc.__init__": {"fullname": "styx.pycodegen.core.PyFunc.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str = '',\targs: list[styx.pycodegen.core.PyArg] = <factory>,\tdocstring_body: str = '',\tbody: list[str] = <factory>,\treturn_descr: str = '',\treturn_type: str | None = None)"}, "styx.pycodegen.core.PyFunc.name": {"fullname": "styx.pycodegen.core.PyFunc.name", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.name", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.args": {"fullname": "styx.pycodegen.core.PyFunc.args", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.args", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.pycodegen.core.PyArg]"}, "styx.pycodegen.core.PyFunc.docstring_body": {"fullname": "styx.pycodegen.core.PyFunc.docstring_body", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.docstring_body", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.body": {"fullname": "styx.pycodegen.core.PyFunc.body", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.body", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyFunc.return_descr": {"fullname": "styx.pycodegen.core.PyFunc.return_descr", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.return_descr", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.return_type": {"fullname": "styx.pycodegen.core.PyFunc.return_type", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.return_type", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.pycodegen.core.PyFunc.generate": {"fullname": "styx.pycodegen.core.PyFunc.generate", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyModule": {"fullname": "styx.pycodegen.core.PyModule", "modulename": "styx.pycodegen.core", "qualname": "PyModule", "kind": "class", "doc": "

Python module.

\n", "bases": "PyGen"}, "styx.pycodegen.core.PyModule.__init__": {"fullname": "styx.pycodegen.core.PyModule.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyModule.__init__", "kind": "function", "doc": "

\n", "signature": "(\timports: list[str] = <factory>,\theader: list[str] = <factory>,\tfuncs: list[styx.pycodegen.core.PyFunc] = <factory>,\tfooter: list[str] = <factory>)"}, "styx.pycodegen.core.PyModule.imports": {"fullname": "styx.pycodegen.core.PyModule.imports", "modulename": "styx.pycodegen.core", "qualname": "PyModule.imports", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.header": {"fullname": "styx.pycodegen.core.PyModule.header", "modulename": "styx.pycodegen.core", "qualname": "PyModule.header", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.funcs": {"fullname": "styx.pycodegen.core.PyModule.funcs", "modulename": "styx.pycodegen.core", "qualname": "PyModule.funcs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.pycodegen.core.PyFunc]"}, "styx.pycodegen.core.PyModule.footer": {"fullname": "styx.pycodegen.core.PyModule.footer", "modulename": "styx.pycodegen.core", "qualname": "PyModule.footer", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.generate": {"fullname": "styx.pycodegen.core.PyModule.generate", "modulename": "styx.pycodegen.core", "qualname": "PyModule.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.format": {"fullname": "styx.pycodegen.format", "modulename": "styx.pycodegen.format", "kind": "module", "doc": "

Format code using ruff.

\n"}, "styx.pycodegen.format.format_code": {"fullname": "styx.pycodegen.format.format_code", "modulename": "styx.pycodegen.format", "qualname": "format_code", "kind": "function", "doc": "

Format code using ruff.

\n", "signature": "(code: str) -> str | None:", "funcdef": "def"}, "styx.pycodegen.scope": {"fullname": "styx.pycodegen.scope", "modulename": "styx.pycodegen.scope", "kind": "module", "doc": "

\n"}, "styx.pycodegen.scope.Scope": {"fullname": "styx.pycodegen.scope.Scope", "modulename": "styx.pycodegen.scope", "qualname": "Scope", "kind": "class", "doc": "

A scope for Python symbols.

\n"}, "styx.pycodegen.scope.Scope.__init__": {"fullname": "styx.pycodegen.scope.Scope.__init__", "modulename": "styx.pycodegen.scope", "qualname": "Scope.__init__", "kind": "function", "doc": "

Create a scope.

\n", "signature": "(parent: styx.pycodegen.scope.Scope | None = None)"}, "styx.pycodegen.scope.Scope.parent": {"fullname": "styx.pycodegen.scope.Scope.parent", "modulename": "styx.pycodegen.scope", "qualname": "Scope.parent", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope | None"}, "styx.pycodegen.scope.Scope.add_or_dodge": {"fullname": "styx.pycodegen.scope.Scope.add_or_dodge", "modulename": "styx.pycodegen.scope", "qualname": "Scope.add_or_dodge", "kind": "function", "doc": "

Add a symbol to the scope, avoiding collisions.

\n", "signature": "(self, symbol: str) -> str:", "funcdef": "def"}, "styx.pycodegen.scope.Scope.add_or_die": {"fullname": "styx.pycodegen.scope.Scope.add_or_die", "modulename": "styx.pycodegen.scope", "qualname": "Scope.add_or_die", "kind": "function", "doc": "

Add a symbol to the scope.

\n", "signature": "(self, symbol: str) -> str:", "funcdef": "def"}, "styx.pycodegen.scope.Scope.python": {"fullname": "styx.pycodegen.scope.Scope.python", "modulename": "styx.pycodegen.scope", "qualname": "Scope.python", "kind": "function", "doc": "

Create a scope with all Python keywords, standard library modules, and builtins.

\n", "signature": "(cls) -> styx.pycodegen.scope.Scope:", "funcdef": "def"}, "styx.pycodegen.string_case": {"fullname": "styx.pycodegen.string_case", "modulename": "styx.pycodegen.string_case", "kind": "module", "doc": "

\n"}, "styx.pycodegen.string_case.snake_case": {"fullname": "styx.pycodegen.string_case.snake_case", "modulename": "styx.pycodegen.string_case", "qualname": "snake_case", "kind": "function", "doc": "

Converts a string to snake case.

\n\n

Consecutive uppercase letters do not receive underscores between them.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.pascal_case": {"fullname": "styx.pycodegen.string_case.pascal_case", "modulename": "styx.pycodegen.string_case", "qualname": "pascal_case", "kind": "function", "doc": "

Converts a string to pascal case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.camel_case": {"fullname": "styx.pycodegen.string_case.camel_case", "modulename": "styx.pycodegen.string_case", "qualname": "camel_case", "kind": "function", "doc": "

Converts a string to camel case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.screaming_snake_case": {"fullname": "styx.pycodegen.string_case.screaming_snake_case", "modulename": "styx.pycodegen.string_case", "qualname": "screaming_snake_case", "kind": "function", "doc": "

Converts a string to screaming snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils": {"fullname": "styx.pycodegen.utils", "modulename": "styx.pycodegen.utils", "kind": "module", "doc": "

\n"}, "styx.pycodegen.utils.ensure_python_symbol": {"fullname": "styx.pycodegen.utils.ensure_python_symbol", "modulename": "styx.pycodegen.utils", "qualname": "ensure_python_symbol", "kind": "function", "doc": "

Ensure that a string is a valid Python symbol.

\n\n
Arguments:
\n\n
    \n
  • name (str): The string to be converted.
    • \n
  • alt_prefix (str): The prefix to use if the name starts with a digit. Defaults to \"v_\".
    • \n
\n\n
Returns:
\n\n
\n

str: A valid Python symbol.

\n
\n", "signature": "(name: str, alt_prefix: str = 'v_') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_camelize": {"fullname": "styx.pycodegen.utils.python_camelize", "modulename": "styx.pycodegen.utils", "qualname": "python_camelize", "kind": "function", "doc": "

Converts a string to camel case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_pascalize": {"fullname": "styx.pycodegen.utils.python_pascalize", "modulename": "styx.pycodegen.utils", "qualname": "python_pascalize", "kind": "function", "doc": "

Converts a string to pascal case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_snakify": {"fullname": "styx.pycodegen.utils.python_snakify", "modulename": "styx.pycodegen.utils", "qualname": "python_snakify", "kind": "function", "doc": "

Converts a string to snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_screaming_snakify": {"fullname": "styx.pycodegen.utils.python_screaming_snakify", "modulename": "styx.pycodegen.utils", "qualname": "python_screaming_snakify", "kind": "function", "doc": "

Converts a string to screaming snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.enquote": {"fullname": "styx.pycodegen.utils.enquote", "modulename": "styx.pycodegen.utils", "qualname": "enquote", "kind": "function", "doc": "

Put a string in \"quotes\".

\n", "signature": "(s: str, quote: str = '"') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.enbrace": {"fullname": "styx.pycodegen.utils.enbrace", "modulename": "styx.pycodegen.utils", "qualname": "enbrace", "kind": "function", "doc": "

Put a string in {braces}.

\n", "signature": "(s: str, brace_type: str = '{') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.as_py_literal": {"fullname": "styx.pycodegen.utils.as_py_literal", "modulename": "styx.pycodegen.utils", "qualname": "as_py_literal", "kind": "function", "doc": "

Convert an object to a Python literal expression.

\n", "signature": "(\tobj: Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[ForwardRef('_TYPE_PYLITERAL')], Mapping[str, ForwardRef('_TYPE_PYLITERAL')]]], Mapping[str, Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[ForwardRef('_TYPE_PYLITERAL')], Mapping[str, ForwardRef('_TYPE_PYLITERAL')]]]],\tquote: str = '"') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.linebreak_line": {"fullname": "styx.pycodegen.utils.linebreak_line", "modulename": "styx.pycodegen.utils", "qualname": "linebreak_line", "kind": "function", "doc": "

Insert linebreaks into a line of text. Breaks lines at word boundaries.

\n", "signature": "(text: str, width: int = 80) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.utils.linebreak_paragraph": {"fullname": "styx.pycodegen.utils.linebreak_paragraph", "modulename": "styx.pycodegen.utils", "qualname": "linebreak_paragraph", "kind": "function", "doc": "

Insert linebreaks into a paragraph of text. Breaks lines at word boundaries.

\n", "signature": "(text: str, width: int = 80, first_line_width: int = 80) -> list[str]:", "funcdef": "def"}, "styx.runners": {"fullname": "styx.runners", "modulename": "styx.runners", "kind": "module", "doc": "

Example runners.

\n"}, "styx.runners.docker": {"fullname": "styx.runners.docker", "modulename": "styx.runners.docker", "kind": "module", "doc": "

\n"}, "styx.runners.docker.DockerExecution": {"fullname": "styx.runners.docker.DockerExecution", "modulename": "styx.runners.docker", "qualname": "DockerExecution", "kind": "class", "doc": "

Execution object used to execute commands.

\n\n

Created by Runner.start_execution().

\n", "bases": "styx.runners.styxdefs.Execution[pathlib.Path, pathlib.Path]"}, "styx.runners.docker.DockerExecution.__init__": {"fullname": "styx.runners.docker.DockerExecution.__init__", "modulename": "styx.runners.docker", "qualname": "DockerExecution.__init__", "kind": "function", "doc": "

\n", "signature": "(metadata: styx.runners.styxdefs.Metadata, output_dir: pathlib.Path)"}, "styx.runners.docker.DockerExecution.metadata": {"fullname": "styx.runners.docker.DockerExecution.metadata", "modulename": "styx.runners.docker", "qualname": "DockerExecution.metadata", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.input_files": {"fullname": "styx.runners.docker.DockerExecution.input_files", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_files", "kind": "variable", "doc": "

\n", "annotation": ": list[tuple[pathlib.Path, str]]"}, "styx.runners.docker.DockerExecution.input_file_next_id": {"fullname": "styx.runners.docker.DockerExecution.input_file_next_id", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_file_next_id", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.output_files": {"fullname": "styx.runners.docker.DockerExecution.output_files", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_files", "kind": "variable", "doc": "

\n", "annotation": ": list[tuple[pathlib.Path, str]]"}, "styx.runners.docker.DockerExecution.output_file_next_id": {"fullname": "styx.runners.docker.DockerExecution.output_file_next_id", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_file_next_id", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.output_dir": {"fullname": "styx.runners.docker.DockerExecution.output_dir", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_dir", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.input_file": {"fullname": "styx.runners.docker.DockerExecution.input_file", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: pathlib.Path) -> str:", "funcdef": "def"}, "styx.runners.docker.DockerExecution.output_file": {"fullname": "styx.runners.docker.DockerExecution.output_file", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> pathlib.Path:", "funcdef": "def"}, "styx.runners.docker.DockerExecution.run": {"fullname": "styx.runners.docker.DockerExecution.run", "modulename": "styx.runners.docker", "qualname": "DockerExecution.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.docker.DockerRunner": {"fullname": "styx.runners.docker.DockerRunner", "modulename": "styx.runners.docker", "qualname": "DockerRunner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "styx.runners.styxdefs.Runner[pathlib.Path, pathlib.Path]"}, "styx.runners.docker.DockerRunner.__init__": {"fullname": "styx.runners.docker.DockerRunner.__init__", "modulename": "styx.runners.docker", "qualname": "DockerRunner.__init__", "kind": "function", "doc": "

Create a new DockerRunner.

\n\n
Arguments:
\n\n
    \n
  • execution_output_dir: A function that returns the output directory for a given Metadata.\nIf None, a folder named 'output_' will be used.\nThis function is called once before every execution.
    • \n
\n", "signature": "(\texecution_output_dir: Optional[Callable[[styx.runners.styxdefs.Metadata], pathlib.Path]] = None)"}, "styx.runners.docker.DockerRunner.execution_output_dir": {"fullname": "styx.runners.docker.DockerRunner.execution_output_dir", "modulename": "styx.runners.docker", "qualname": "DockerRunner.execution_output_dir", "kind": "variable", "doc": "

\n", "annotation": ": Callable[[styx.runners.styxdefs.Metadata], pathlib.Path]"}, "styx.runners.docker.DockerRunner.start_execution": {"fullname": "styx.runners.docker.DockerRunner.start_execution", "modulename": "styx.runners.docker", "qualname": "DockerRunner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[pathlib.Path, pathlib.Path]:", "funcdef": "def"}, "styx.runners.dummy": {"fullname": "styx.runners.dummy", "modulename": "styx.runners.dummy", "kind": "module", "doc": "

\n"}, "styx.runners.dummy.DummyRunner": {"fullname": "styx.runners.dummy.DummyRunner", "modulename": "styx.runners.dummy", "qualname": "DummyRunner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "styx.runners.styxdefs.Runner[str, str], styx.runners.styxdefs.Execution[str, str]"}, "styx.runners.dummy.DummyRunner.last_cargs": {"fullname": "styx.runners.dummy.DummyRunner.last_cargs", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.last_cargs", "kind": "variable", "doc": "

\n", "annotation": ": list[str] | None"}, "styx.runners.dummy.DummyRunner.last_metadata": {"fullname": "styx.runners.dummy.DummyRunner.last_metadata", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.last_metadata", "kind": "variable", "doc": "

\n", "annotation": ": styx.runners.styxdefs.Metadata | None"}, "styx.runners.dummy.DummyRunner.start_execution": {"fullname": "styx.runners.dummy.DummyRunner.start_execution", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[str, str]:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.input_file": {"fullname": "styx.runners.dummy.DummyRunner.input_file", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: str) -> str:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.output_file": {"fullname": "styx.runners.dummy.DummyRunner.output_file", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> str:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.run": {"fullname": "styx.runners.dummy.DummyRunner.run", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.styxdefs": {"fullname": "styx.runners.styxdefs", "modulename": "styx.runners.styxdefs", "kind": "module", "doc": "

\n"}, "styx.runners.styxdefs.P": {"fullname": "styx.runners.styxdefs.P", "modulename": "styx.runners.styxdefs", "qualname": "P", "kind": "variable", "doc": "

Input host file type.

\n", "default_value": "-P"}, "styx.runners.styxdefs.R": {"fullname": "styx.runners.styxdefs.R", "modulename": "styx.runners.styxdefs", "qualname": "R", "kind": "variable", "doc": "

Output host file type.

\n", "default_value": "+R"}, "styx.runners.styxdefs.Execution": {"fullname": "styx.runners.styxdefs.Execution", "modulename": "styx.runners.styxdefs", "qualname": "Execution", "kind": "class", "doc": "

Execution object used to execute commands.

\n\n

Created by Runner.start_execution().

\n", "bases": "typing.Protocol[-P, +R]"}, "styx.runners.styxdefs.Execution.__init__": {"fullname": "styx.runners.styxdefs.Execution.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Execution.__init__", "kind": "function", "doc": "

\n", "signature": "(*args, **kwargs)"}, "styx.runners.styxdefs.Execution.input_file": {"fullname": "styx.runners.styxdefs.Execution.input_file", "modulename": "styx.runners.styxdefs", "qualname": "Execution.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: -P) -> str:", "funcdef": "def"}, "styx.runners.styxdefs.Execution.run": {"fullname": "styx.runners.styxdefs.Execution.run", "modulename": "styx.runners.styxdefs", "qualname": "Execution.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.styxdefs.Execution.output_file": {"fullname": "styx.runners.styxdefs.Execution.output_file", "modulename": "styx.runners.styxdefs", "qualname": "Execution.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> +R:", "funcdef": "def"}, "styx.runners.styxdefs.Metadata": {"fullname": "styx.runners.styxdefs.Metadata", "modulename": "styx.runners.styxdefs", "qualname": "Metadata", "kind": "class", "doc": "

Static tool metadata.

\n\n

This is structured static metadata that is known at compile time.\nRunners can use this to set up execution environments.

\n", "bases": "typing.NamedTuple"}, "styx.runners.styxdefs.Metadata.__init__": {"fullname": "styx.runners.styxdefs.Metadata.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.__init__", "kind": "function", "doc": "

Create new instance of Metadata(id, name, container_image_type, container_image_tag, container_image_index, container_image_opts)

\n", "signature": "(\tid: str,\tname: str,\tcontainer_image_type: str | None = None,\tcontainer_image_tag: str | None = None,\tcontainer_image_index: str | None = None,\tcontainer_image_opts: str | None = None)"}, "styx.runners.styxdefs.Metadata.id": {"fullname": "styx.runners.styxdefs.Metadata.id", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.id", "kind": "variable", "doc": "

Unique identifier of the tool.

\n", "annotation": ": str"}, "styx.runners.styxdefs.Metadata.name": {"fullname": "styx.runners.styxdefs.Metadata.name", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.name", "kind": "variable", "doc": "

Name of the tool.

\n", "annotation": ": str"}, "styx.runners.styxdefs.Metadata.container_image_type": {"fullname": "styx.runners.styxdefs.Metadata.container_image_type", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_type", "kind": "variable", "doc": "

Type of container image. Example: docker, singularity.

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_tag": {"fullname": "styx.runners.styxdefs.Metadata.container_image_tag", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_tag", "kind": "variable", "doc": "

Name of an image where the tool is installed and configured. Example: bids/mriqc.

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_index": {"fullname": "styx.runners.styxdefs.Metadata.container_image_index", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_index", "kind": "variable", "doc": "

Optional index where the image is available, if not the standard location. Example: docker.io

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_opts": {"fullname": "styx.runners.styxdefs.Metadata.container_image_opts", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_opts", "kind": "variable", "doc": "

Container-level arguments for the application. Example: --privileged

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Runner": {"fullname": "styx.runners.styxdefs.Runner", "modulename": "styx.runners.styxdefs", "qualname": "Runner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "typing.Protocol[-P, +R]"}, "styx.runners.styxdefs.Runner.__init__": {"fullname": "styx.runners.styxdefs.Runner.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Runner.__init__", "kind": "function", "doc": "

\n", "signature": "(*args, **kwargs)"}, "styx.runners.styxdefs.Runner.start_execution": {"fullname": "styx.runners.styxdefs.Runner.start_execution", "modulename": "styx.runners.styxdefs", "qualname": "Runner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[-P, +R]:", "funcdef": "def"}}, "docInfo": {"styx": {"qualname": 0, "fullname": 1, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 202}, "styx.boutiques": {"qualname": 0, "fullname": 2, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 39}, "styx.boutiques.model": {"qualname": 0, "fullname": 3, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.Type": {"qualname": 1, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 0, "bases": 2, "doc": 336}, "styx.boutiques.model.Type.docker": {"qualname": 2, "fullname": 5, "annotation": 0, "default_value": 9, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.Type.singularity": {"qualname": 2, "fullname": 5, "annotation": 0, "default_value": 9, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImageItem": 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"styx.boutiques.model.ContainerImage1.model_fields": {"qualname": 3, "fullname": 6, "annotation": 0, "default_value": 64, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImage1.model_computed_fields": {"qualname": 4, "fullname": 7, "annotation": 0, "default_value": 1, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImage2": {"qualname": 1, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 0, "bases": 2, "doc": 380}, "styx.boutiques.model.ContainerImage2.model_config": {"qualname": 3, "fullname": 6, "annotation": 0, "default_value": 9, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImage2.model_fields": {"qualname": 3, "fullname": 6, "annotation": 0, "default_value": 178, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImage2.model_computed_fields": {"qualname": 4, "fullname": 7, "annotation": 0, "default_value": 1, "signature": 0, "bases": 0, "doc": 3}, 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"styx.pycodegen.core": {"tf": 1}}, "df": 3}}}}}}}}, "p": {"docs": {"styx.runners.styxdefs.Metadata": {"tf": 1}}, "df": 1, "p": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "c": {"docs": {}, "df": 0, "a": {"docs": {}, "df": 0, "s": {"docs": {}, "df": 0, "e": {"docs": {"styx.pycodegen.string_case.snake_case": {"tf": 1}}, "df": 1}}}}}}}}}, "q": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "s": {"docs": {"styx.pycodegen.utils.enquote": {"tf": 1}}, "df": 1}}}}}}}}}, "pipeline": ["trimmer"], "_isPrebuiltIndex": true}; + /** pdoc search index */const docs = {"version": "0.9.5", "fields": ["qualname", "fullname", "annotation", "default_value", "signature", "bases", "doc"], "ref": "fullname", "documentStore": {"docs": {"styx": {"fullname": "styx", "modulename": "styx", "kind": "module", "doc": "

Styx

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\n \n

\n\n

\"Build\"\n\"codecov\"\n\"Ruff\"\n\"stability-wip\"\n\"MIT\n\"pages\"

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Compile Python command line tool wrappers from Boutiques descriptors.

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Features

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    \n
  • Target modern Python (3.11+)
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  • Intellisense & full static type checking for inputs and outputs
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  • Documentation generation
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  • Custom execution environments via dependency injection
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  • Runtime input validation
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  • Integration test generation
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  • Default runners\n
      \n
    • Local
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    • Docker
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    • Singularity
      • \n
    • \n
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Boutiques descriptor implementation status: 77%

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    \n
  • Documentation
    • \n
  • Types (String, Numerical, File)
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  • Flags
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  • Lists
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  • Enums
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  • Constraints (Numeric ranges, Groups)
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  • (Conditional) outputs
    • \n
  • Static metadata (Hash, name, container environment)
    • \n
  • Tests
    • \n
\n"}, "styx.boutiques": {"fullname": "styx.boutiques", "modulename": "styx.boutiques", "kind": "module", "doc": "

Boutiques.

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model.py was created via the following command:

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datamodel-codegen     --input boutiques/tools/python/boutiques/schema/descriptor.schema.json     --input-file-type jsonschema     --output src/boutiques-codegen/model.py     --output-model-type pydantic_v2.BaseModel\n
\n"}, "styx.boutiques.model": {"fullname": "styx.boutiques.model", "modulename": "styx.boutiques.model", "kind": "module", "doc": "

\n"}, "styx.boutiques.model.Type": {"fullname": "styx.boutiques.model.Type", "modulename": "styx.boutiques.model", "qualname": "Type", "kind": "class", "doc": "

Create a collection of name/value pairs.

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Example enumeration:

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>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
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Access them by:

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  • attribute access:

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    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

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    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

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    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
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Enumerations can be iterated over, and know how many members they have:

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\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type.docker": {"fullname": "styx.boutiques.model.Type.docker", "modulename": "styx.boutiques.model", "qualname": "Type.docker", "kind": "variable", "doc": "

\n", "default_value": "<Type.docker: 'docker'>"}, "styx.boutiques.model.Type.singularity": {"fullname": "styx.boutiques.model.Type.singularity", "modulename": "styx.boutiques.model", "qualname": "Type.singularity", "kind": "variable", "doc": "

\n", "default_value": "<Type.singularity: 'singularity'>"}, "styx.boutiques.model.ContainerImageItem": {"fullname": "styx.boutiques.model.ContainerImageItem", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImageItem.model_config": {"fullname": "styx.boutiques.model.ContainerImageItem.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImageItem.type": {"fullname": "styx.boutiques.model.ContainerImageItem.type", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type"}, "styx.boutiques.model.ContainerImageItem.image": {"fullname": "styx.boutiques.model.ContainerImageItem.image", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.image", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.ContainerImageItem.entrypoint": {"fullname": "styx.boutiques.model.ContainerImageItem.entrypoint", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.entrypoint", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.ContainerImageItem.index": {"fullname": "styx.boutiques.model.ContainerImageItem.index", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.index", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImageItem.container_opts": {"fullname": "styx.boutiques.model.ContainerImageItem.container_opts", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.container_opts", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.ContainerImageItem.working_directory": {"fullname": "styx.boutiques.model.ContainerImageItem.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem.container_hash": {"fullname": "styx.boutiques.model.ContainerImageItem.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem.model_fields": {"fullname": "styx.boutiques.model.ContainerImageItem.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type, required=True), 'image': FieldInfo(annotation=str, required=True, description='Name of an image where the tool is installed and configured. Example: bids/mriqc.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'entrypoint': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Flag indicating whether or not the container uses an entrypoint.'), 'index': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Optional index where the image is available, if not the standard location. Example: docker.io'), 'container_opts': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='container-opts', alias_priority=2, description='Container-level arguments for the application. Example: --privileged'), 'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2)}"}, "styx.boutiques.model.ContainerImageItem.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImageItem.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type1": {"fullname": "styx.boutiques.model.Type1", "modulename": "styx.boutiques.model", "qualname": "Type1", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type1.rootfs": {"fullname": "styx.boutiques.model.Type1.rootfs", "modulename": "styx.boutiques.model", "qualname": "Type1.rootfs", "kind": "variable", "doc": "

\n", "default_value": "<Type1.rootfs: 'rootfs'>"}, "styx.boutiques.model.ContainerImageItem1": {"fullname": "styx.boutiques.model.ContainerImageItem1", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImageItem1.model_config": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImageItem1.type": {"fullname": "styx.boutiques.model.ContainerImageItem1.type", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type1"}, "styx.boutiques.model.ContainerImageItem1.url": {"fullname": "styx.boutiques.model.ContainerImageItem1.url", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.url", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.ContainerImageItem1.working_directory": {"fullname": "styx.boutiques.model.ContainerImageItem1.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem1.container_hash": {"fullname": "styx.boutiques.model.ContainerImageItem1.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ContainerImageItem1.model_fields": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type1, required=True), 'url': FieldInfo(annotation=str, required=True, description='URL where the image is available.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2)}"}, "styx.boutiques.model.ContainerImageItem1.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImageItem1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImageItem1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage1": {"fullname": "styx.boutiques.model.ContainerImage1", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ContainerImage1.working_directory": {"fullname": "styx.boutiques.model.ContainerImage1.working_directory", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.working_directory", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImage1.container_hash": {"fullname": "styx.boutiques.model.ContainerImage1.container_hash", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.container_hash", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.ContainerImage1.model_config": {"fullname": "styx.boutiques.model.ContainerImage1.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage1.model_fields": {"fullname": "styx.boutiques.model.ContainerImage1.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='working-directory', alias_priority=2, description='Location from which this task must be launched within the container.'), 'container_hash': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='container-hash', alias_priority=2, description='Hash for the given container.')}"}, "styx.boutiques.model.ContainerImage1.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage2": {"fullname": "styx.boutiques.model.ContainerImage2", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "ContainerImageItem, ContainerImage1"}, "styx.boutiques.model.ContainerImage2.model_config": {"fullname": "styx.boutiques.model.ContainerImage2.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImage2.model_fields": {"fullname": "styx.boutiques.model.ContainerImage2.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2), 'type': FieldInfo(annotation=Type, required=True), 'image': FieldInfo(annotation=str, required=True, description='Name of an image where the tool is installed and configured. Example: bids/mriqc.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'entrypoint': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Flag indicating whether or not the container uses an entrypoint.'), 'index': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Optional index where the image is available, if not the standard location. Example: docker.io'), 'container_opts': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='container-opts', alias_priority=2, description='Container-level arguments for the application. Example: --privileged')}"}, "styx.boutiques.model.ContainerImage2.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage2.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage2.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage3": {"fullname": "styx.boutiques.model.ContainerImage3", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "ContainerImageItem1, ContainerImage1"}, "styx.boutiques.model.ContainerImage3.model_config": {"fullname": "styx.boutiques.model.ContainerImage3.model_config", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ContainerImage3.model_fields": {"fullname": "styx.boutiques.model.ContainerImage3.model_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'working_directory': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='working-directory', alias_priority=2), 'container_hash': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='container-hash', alias_priority=2), 'type': FieldInfo(annotation=Type1, required=True), 'url': FieldInfo(annotation=str, required=True, description='URL where the image is available.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)])}"}, "styx.boutiques.model.ContainerImage3.model_computed_fields": {"fullname": "styx.boutiques.model.ContainerImage3.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ContainerImage3.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ContainerImage": {"fullname": "styx.boutiques.model.ContainerImage", "modulename": "styx.boutiques.model", "qualname": "ContainerImage", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/#rootmodel-and-custom-root-types

\n\n

A Pydantic BaseModel for the root object of the model.

\n\n
Attributes:
\n\n
    \n
  • root: The root object of the model.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_private__: Private fields in the model.
    • \n
  • __pydantic_extra__: Extra fields in the model.
    • \n
\n", "bases": "pydantic.main.BaseModel, typing.Generic[~RootModelRootType]"}, "styx.boutiques.model.ContainerImage.root": {"fullname": "styx.boutiques.model.ContainerImage.root", "modulename": "styx.boutiques.model", "qualname": "ContainerImage.root", "kind": "variable", "doc": "

\n", "annotation": ": Union[styx.boutiques.model.ContainerImage2, styx.boutiques.model.ContainerImage3]"}, "styx.boutiques.model.SchemaVersion": {"fullname": "styx.boutiques.model.SchemaVersion", "modulename": "styx.boutiques.model", "qualname": "SchemaVersion", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.SchemaVersion.field_0_5": {"fullname": "styx.boutiques.model.SchemaVersion.field_0_5", "modulename": "styx.boutiques.model", "qualname": "SchemaVersion.field_0_5", "kind": "variable", "doc": "

\n", "default_value": "<SchemaVersion.field_0_5: '0.5'>"}, "styx.boutiques.model.EnvironmentVariable": {"fullname": "styx.boutiques.model.EnvironmentVariable", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.EnvironmentVariable.model_config": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_config", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.EnvironmentVariable.name": {"fullname": "styx.boutiques.model.EnvironmentVariable.name", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[a-z,A-Z][0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.EnvironmentVariable.value": {"fullname": "styx.boutiques.model.EnvironmentVariable.value", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.value", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.boutiques.model.EnvironmentVariable.description": {"fullname": "styx.boutiques.model.EnvironmentVariable.description", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.EnvironmentVariable.model_fields": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_fields", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='The environment variable name (identifier) containing only alphanumeric characters and underscores. Example: "PROGRAM_PATH".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[a-z,A-Z][0-9,_,a-z,A-Z]*$')]), 'value': FieldInfo(annotation=str, required=True, description='The value of the environment variable.'), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Description of the environment variable.')}"}, "styx.boutiques.model.EnvironmentVariable.model_computed_fields": {"fullname": "styx.boutiques.model.EnvironmentVariable.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "EnvironmentVariable.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Group": {"fullname": "styx.boutiques.model.Group", "modulename": "styx.boutiques.model", "qualname": "Group", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Group.model_config": {"fullname": "styx.boutiques.model.Group.model_config", "modulename": "styx.boutiques.model", "qualname": "Group.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Group.id": {"fullname": "styx.boutiques.model.Group.id", "modulename": "styx.boutiques.model", "qualname": "Group.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Group.name": {"fullname": "styx.boutiques.model.Group.name", "modulename": "styx.boutiques.model", "qualname": "Group.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Group.description": {"fullname": "styx.boutiques.model.Group.description", "modulename": "styx.boutiques.model", "qualname": "Group.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Group.members": {"fullname": "styx.boutiques.model.Group.members", "modulename": "styx.boutiques.model", "qualname": "Group.members", "kind": "variable", "doc": "

\n", "annotation": ": List[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]]"}, "styx.boutiques.model.Group.mutually_exclusive": {"fullname": "styx.boutiques.model.Group.mutually_exclusive", "modulename": "styx.boutiques.model", "qualname": "Group.mutually_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.one_is_required": {"fullname": "styx.boutiques.model.Group.one_is_required", "modulename": "styx.boutiques.model", "qualname": "Group.one_is_required", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.all_or_none": {"fullname": "styx.boutiques.model.Group.all_or_none", "modulename": "styx.boutiques.model", "qualname": "Group.all_or_none", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Group.model_fields": {"fullname": "styx.boutiques.model.Group.model_fields", "modulename": "styx.boutiques.model", "qualname": "Group.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "outfile_group".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description='A human-readable name for the input group.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Description of the input group.'), 'members': FieldInfo(annotation=List[Annotated[str, StringConstraints]], required=True, description='IDs of the inputs belonging to this group.'), 'mutually_exclusive': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='mutually-exclusive', alias_priority=2, description='True if only one input in the group may be active at runtime.'), 'one_is_required': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='one-is-required', alias_priority=2, description='True if at least one of the inputs in the group must be active at runtime.'), 'all_or_none': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='all-or-none', alias_priority=2, description='True if members of the group need to be toggled together')}"}, "styx.boutiques.model.Group.model_computed_fields": {"fullname": "styx.boutiques.model.Group.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Group.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type2": {"fullname": "styx.boutiques.model.Type2", "modulename": "styx.boutiques.model", "qualname": "Type2", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type2.Flag": {"fullname": "styx.boutiques.model.Type2.Flag", "modulename": "styx.boutiques.model", "qualname": "Type2.Flag", "kind": "variable", "doc": "

\n", "default_value": "<Type2.Flag: 'Flag'>"}, "styx.boutiques.model.ListModel": {"fullname": "styx.boutiques.model.ListModel", "modulename": "styx.boutiques.model", "qualname": "ListModel", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.ListModel.bool_False": {"fullname": "styx.boutiques.model.ListModel.bool_False", "modulename": "styx.boutiques.model", "qualname": "ListModel.bool_False", "kind": "variable", "doc": "

\n", "default_value": "<ListModel.bool_False: False>"}, "styx.boutiques.model.Input": {"fullname": "styx.boutiques.model.Input", "modulename": "styx.boutiques.model", "qualname": "Input", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Input.type": {"fullname": "styx.boutiques.model.Input.type", "modulename": "styx.boutiques.model", "qualname": "Input.type", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.Type2]"}, "styx.boutiques.model.Input.list": {"fullname": "styx.boutiques.model.Input.list", "modulename": "styx.boutiques.model", "qualname": "Input.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ListModel]"}, "styx.boutiques.model.Input.model_config": {"fullname": "styx.boutiques.model.Input.model_config", "modulename": "styx.boutiques.model", "qualname": "Input.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Input.model_fields": {"fullname": "styx.boutiques.model.Input.model_fields", "modulename": "styx.boutiques.model", "qualname": "Input.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Union[Type2, NoneType], required=False), 'list': FieldInfo(annotation=Union[ListModel, NoneType], required=False)}"}, "styx.boutiques.model.Input.model_computed_fields": {"fullname": "styx.boutiques.model.Input.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Input.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type3": {"fullname": "styx.boutiques.model.Type3", "modulename": "styx.boutiques.model", "qualname": "Type3", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type3.String": {"fullname": "styx.boutiques.model.Type3.String", "modulename": "styx.boutiques.model", "qualname": "Type3.String", "kind": "variable", "doc": "

\n", "default_value": "<Type3.String: 'String'>"}, "styx.boutiques.model.Type3.File": {"fullname": "styx.boutiques.model.Type3.File", "modulename": "styx.boutiques.model", "qualname": "Type3.File", "kind": "variable", "doc": "

\n", "default_value": "<Type3.File: 'File'>"}, "styx.boutiques.model.Type3.Number": {"fullname": "styx.boutiques.model.Type3.Number", "modulename": "styx.boutiques.model", "qualname": "Type3.Number", "kind": "variable", "doc": "

\n", "default_value": "<Type3.Number: 'Number'>"}, "styx.boutiques.model.Input1": {"fullname": "styx.boutiques.model.Input1", "modulename": "styx.boutiques.model", "qualname": "Input1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Input1.type": {"fullname": "styx.boutiques.model.Input1.type", "modulename": "styx.boutiques.model", "qualname": "Input1.type", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.Type3]"}, "styx.boutiques.model.Input1.model_config": {"fullname": "styx.boutiques.model.Input1.model_config", "modulename": "styx.boutiques.model", "qualname": "Input1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Input1.model_fields": {"fullname": "styx.boutiques.model.Input1.model_fields", "modulename": "styx.boutiques.model", "qualname": "Input1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Union[Type3, NoneType], required=False)}"}, "styx.boutiques.model.Input1.model_computed_fields": {"fullname": "styx.boutiques.model.Input1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Input1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Type4": {"fullname": "styx.boutiques.model.Type4", "modulename": "styx.boutiques.model", "qualname": "Type4", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.Type4.String": {"fullname": "styx.boutiques.model.Type4.String", "modulename": "styx.boutiques.model", "qualname": "Type4.String", "kind": "variable", "doc": "

\n", "default_value": "<Type4.String: 'String'>"}, "styx.boutiques.model.Type4.File": {"fullname": "styx.boutiques.model.Type4.File", "modulename": "styx.boutiques.model", "qualname": "Type4.File", "kind": "variable", "doc": "

\n", "default_value": "<Type4.File: 'File'>"}, "styx.boutiques.model.Type4.Flag": {"fullname": "styx.boutiques.model.Type4.Flag", "modulename": "styx.boutiques.model", "qualname": "Type4.Flag", "kind": "variable", "doc": "

\n", "default_value": "<Type4.Flag: 'Flag'>"}, "styx.boutiques.model.Type4.Number": {"fullname": "styx.boutiques.model.Type4.Number", "modulename": "styx.boutiques.model", "qualname": "Type4.Number", "kind": "variable", "doc": "

\n", "default_value": "<Type4.Number: 'Number'>"}, "styx.boutiques.model.Inputs": {"fullname": "styx.boutiques.model.Inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "Input"}, "styx.boutiques.model.Inputs.model_config": {"fullname": "styx.boutiques.model.Inputs.model_config", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Inputs.id": {"fullname": "styx.boutiques.model.Inputs.id", "modulename": "styx.boutiques.model", "qualname": "Inputs.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Inputs.name": {"fullname": "styx.boutiques.model.Inputs.name", "modulename": "styx.boutiques.model", "qualname": "Inputs.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Inputs.type": {"fullname": "styx.boutiques.model.Inputs.type", "modulename": "styx.boutiques.model", "qualname": "Inputs.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type4"}, "styx.boutiques.model.Inputs.description": {"fullname": "styx.boutiques.model.Inputs.description", "modulename": "styx.boutiques.model", "qualname": "Inputs.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.value_key": {"fullname": "styx.boutiques.model.Inputs.value_key", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.list": {"fullname": "styx.boutiques.model.Inputs.list", "modulename": "styx.boutiques.model", "qualname": "Inputs.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.list_separator": {"fullname": "styx.boutiques.model.Inputs.list_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.optional": {"fullname": "styx.boutiques.model.Inputs.optional", "modulename": "styx.boutiques.model", "qualname": "Inputs.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.command_line_flag": {"fullname": "styx.boutiques.model.Inputs.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "Inputs.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.requires_inputs": {"fullname": "styx.boutiques.model.Inputs.requires_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs.requires_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs.disables_inputs": {"fullname": "styx.boutiques.model.Inputs.disables_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs.disables_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs.command_line_flag_separator": {"fullname": "styx.boutiques.model.Inputs.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs.default_value": {"fullname": "styx.boutiques.model.Inputs.default_value", "modulename": "styx.boutiques.model", "qualname": "Inputs.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.Inputs.value_choices": {"fullname": "styx.boutiques.model.Inputs.value_choices", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_choices", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[str, float]]]"}, "styx.boutiques.model.Inputs.value_requires": {"fullname": "styx.boutiques.model.Inputs.value_requires", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_requires", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs.value_disables": {"fullname": "styx.boutiques.model.Inputs.value_disables", "modulename": "styx.boutiques.model", "qualname": "Inputs.value_disables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs.integer": {"fullname": "styx.boutiques.model.Inputs.integer", "modulename": "styx.boutiques.model", "qualname": "Inputs.integer", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.minimum": {"fullname": "styx.boutiques.model.Inputs.minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs.minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.maximum": {"fullname": "styx.boutiques.model.Inputs.maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs.maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.exclusive_minimum": {"fullname": "styx.boutiques.model.Inputs.exclusive_minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs.exclusive_minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.exclusive_maximum": {"fullname": "styx.boutiques.model.Inputs.exclusive_maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs.exclusive_maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.min_list_entries": {"fullname": "styx.boutiques.model.Inputs.min_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs.min_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.max_list_entries": {"fullname": "styx.boutiques.model.Inputs.max_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs.max_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs.uses_absolute_path": {"fullname": "styx.boutiques.model.Inputs.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "Inputs.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs.model_fields": {"fullname": "styx.boutiques.model.Inputs.model_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type4, required=True, description='Input type.'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is a list of value. An input of type "Flag" cannot be a list.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable input name. Example: 'Data file'.", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Input description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the input value and/or flag at runtime.'), 'list_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='list-separator', alias_priority=2, description='Separator used between list items. Defaults to a single space.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is optional.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the input, involved in the value-key substitution. Inputs of type "Flag" have to have a command-line flag. Examples: -v, --force.'), 'requires_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='requires-inputs', alias_priority=2, description='Ids of the inputs or ids of groups whose members must be active for this input to be available.'), 'disables_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='disables-inputs', alias_priority=2, description='Ids of the inputs that are disabled when this input is active.'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'default_value': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='default-value', alias_priority=2, description='Default value of the input. The default value is set when no value is specified, even when the input is optional. If the desired behavior is to omit the input from the command line when no value is specified, then no default value should be used. In this case, the tool might still use a default value internally, but this will remain undocumented in the Boutiques interface.'), 'value_choices': FieldInfo(annotation=Union[List[Union[str, float]], NoneType], required=False, alias='value-choices', alias_priority=2, description='Permitted choices for input value. May not be used with the Flag type.'), 'value_requires': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-requires', alias_priority=2, description='Ids of the inputs that are required when the corresponding value choice is selected.'), 'value_disables': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-disables', alias_priority=2, description='Ids of the inputs that are disabled when the corresponding value choice is selected.'), 'integer': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Specify whether the input should be an integer. May only be used with Number type inputs.'), 'minimum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the minimum value of the input (inclusive). May only be used with Number type inputs.'), 'maximum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the maximum value of the input (inclusive). May only be used with Number type inputs.'), 'exclusive_minimum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-minimum', alias_priority=2, description='Specify whether the minimum is exclusive or not. May only be used with Number type inputs.'), 'exclusive_maximum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-maximum', alias_priority=2, description='Specify whether the maximum is exclusive or not. May only be used with Number type inputs.'), 'min_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='min-list-entries', alias_priority=2, description='Specify the minimum number of entries in the list. May only be used with List type inputs.'), 'max_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='max-list-entries', alias_priority=2, description='Specify the maximum number of entries in the list. May only be used with List type inputs.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this input must be given as an absolute path. Only specifiable for File type inputs.')}"}, "styx.boutiques.model.Inputs.model_computed_fields": {"fullname": "styx.boutiques.model.Inputs.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Inputs1": {"fullname": "styx.boutiques.model.Inputs1", "modulename": "styx.boutiques.model", "qualname": "Inputs1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "Input1"}, "styx.boutiques.model.Inputs1.model_config": {"fullname": "styx.boutiques.model.Inputs1.model_config", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Inputs1.id": {"fullname": "styx.boutiques.model.Inputs1.id", "modulename": "styx.boutiques.model", "qualname": "Inputs1.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.Inputs1.name": {"fullname": "styx.boutiques.model.Inputs1.name", "modulename": "styx.boutiques.model", "qualname": "Inputs1.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Inputs1.type": {"fullname": "styx.boutiques.model.Inputs1.type", "modulename": "styx.boutiques.model", "qualname": "Inputs1.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.Type4"}, "styx.boutiques.model.Inputs1.description": {"fullname": "styx.boutiques.model.Inputs1.description", "modulename": "styx.boutiques.model", "qualname": "Inputs1.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.value_key": {"fullname": "styx.boutiques.model.Inputs1.value_key", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.list": {"fullname": "styx.boutiques.model.Inputs1.list", "modulename": "styx.boutiques.model", "qualname": "Inputs1.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.list_separator": {"fullname": "styx.boutiques.model.Inputs1.list_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs1.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.optional": {"fullname": "styx.boutiques.model.Inputs1.optional", "modulename": "styx.boutiques.model", "qualname": "Inputs1.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.command_line_flag": {"fullname": "styx.boutiques.model.Inputs1.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "Inputs1.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.requires_inputs": {"fullname": "styx.boutiques.model.Inputs1.requires_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs1.requires_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs1.disables_inputs": {"fullname": "styx.boutiques.model.Inputs1.disables_inputs", "modulename": "styx.boutiques.model", "qualname": "Inputs1.disables_inputs", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.Inputs1.command_line_flag_separator": {"fullname": "styx.boutiques.model.Inputs1.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "Inputs1.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.Inputs1.default_value": {"fullname": "styx.boutiques.model.Inputs1.default_value", "modulename": "styx.boutiques.model", "qualname": "Inputs1.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.Inputs1.value_choices": {"fullname": "styx.boutiques.model.Inputs1.value_choices", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_choices", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[str, float]]]"}, "styx.boutiques.model.Inputs1.value_requires": {"fullname": "styx.boutiques.model.Inputs1.value_requires", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_requires", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs1.value_disables": {"fullname": "styx.boutiques.model.Inputs1.value_disables", "modulename": "styx.boutiques.model", "qualname": "Inputs1.value_disables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Inputs1.integer": {"fullname": "styx.boutiques.model.Inputs1.integer", "modulename": "styx.boutiques.model", "qualname": "Inputs1.integer", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.minimum": {"fullname": "styx.boutiques.model.Inputs1.minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.maximum": {"fullname": "styx.boutiques.model.Inputs1.maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.exclusive_minimum": {"fullname": "styx.boutiques.model.Inputs1.exclusive_minimum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.exclusive_minimum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.exclusive_maximum": {"fullname": "styx.boutiques.model.Inputs1.exclusive_maximum", "modulename": "styx.boutiques.model", "qualname": "Inputs1.exclusive_maximum", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.min_list_entries": {"fullname": "styx.boutiques.model.Inputs1.min_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs1.min_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.max_list_entries": {"fullname": "styx.boutiques.model.Inputs1.max_list_entries", "modulename": "styx.boutiques.model", "qualname": "Inputs1.max_list_entries", "kind": "variable", "doc": "

\n", "annotation": ": Optional[float]"}, "styx.boutiques.model.Inputs1.uses_absolute_path": {"fullname": "styx.boutiques.model.Inputs1.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "Inputs1.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.Inputs1.model_fields": {"fullname": "styx.boutiques.model.Inputs1.model_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'type': FieldInfo(annotation=Type4, required=True, description='Input type.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file".', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable input name. Example: 'Data file'.", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Input description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the input value and/or flag at runtime.'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is a list of value. An input of type "Flag" cannot be a list.'), 'list_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='list-separator', alias_priority=2, description='Separator used between list items. Defaults to a single space.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if input is optional.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the input, involved in the value-key substitution. Inputs of type "Flag" have to have a command-line flag. Examples: -v, --force.'), 'requires_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='requires-inputs', alias_priority=2, description='Ids of the inputs or ids of groups whose members must be active for this input to be available.'), 'disables_inputs': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='disables-inputs', alias_priority=2, description='Ids of the inputs that are disabled when this input is active.'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'default_value': FieldInfo(annotation=Union[Any, NoneType], required=False, alias='default-value', alias_priority=2, description='Default value of the input. The default value is set when no value is specified, even when the input is optional. If the desired behavior is to omit the input from the command line when no value is specified, then no default value should be used. In this case, the tool might still use a default value internally, but this will remain undocumented in the Boutiques interface.'), 'value_choices': FieldInfo(annotation=Union[List[Union[str, float]], NoneType], required=False, alias='value-choices', alias_priority=2, description='Permitted choices for input value. May not be used with the Flag type.'), 'value_requires': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-requires', alias_priority=2, description='Ids of the inputs that are required when the corresponding value choice is selected.'), 'value_disables': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='value-disables', alias_priority=2, description='Ids of the inputs that are disabled when the corresponding value choice is selected.'), 'integer': FieldInfo(annotation=Union[bool, NoneType], required=False, description='Specify whether the input should be an integer. May only be used with Number type inputs.'), 'minimum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the minimum value of the input (inclusive). May only be used with Number type inputs.'), 'maximum': FieldInfo(annotation=Union[float, NoneType], required=False, description='Specify the maximum value of the input (inclusive). May only be used with Number type inputs.'), 'exclusive_minimum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-minimum', alias_priority=2, description='Specify whether the minimum is exclusive or not. May only be used with Number type inputs.'), 'exclusive_maximum': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='exclusive-maximum', alias_priority=2, description='Specify whether the maximum is exclusive or not. May only be used with Number type inputs.'), 'min_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='min-list-entries', alias_priority=2, description='Specify the minimum number of entries in the list. May only be used with List type inputs.'), 'max_list_entries': FieldInfo(annotation=Union[float, NoneType], required=False, alias='max-list-entries', alias_priority=2, description='Specify the maximum number of entries in the list. May only be used with List type inputs.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this input must be given as an absolute path. Only specifiable for File type inputs.')}"}, "styx.boutiques.model.Inputs1.model_computed_fields": {"fullname": "styx.boutiques.model.Inputs1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Inputs1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Test": {"fullname": "styx.boutiques.model.Test", "modulename": "styx.boutiques.model", "qualname": "Test", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Test.name": {"fullname": "styx.boutiques.model.Test.name", "modulename": "styx.boutiques.model", "qualname": "Test.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Test.invocation": {"fullname": "styx.boutiques.model.Test.invocation", "modulename": "styx.boutiques.model", "qualname": "Test.invocation", "kind": "variable", "doc": "

\n", "annotation": ": Dict[str, Any]"}, "styx.boutiques.model.Test.model_config": {"fullname": "styx.boutiques.model.Test.model_config", "modulename": "styx.boutiques.model", "qualname": "Test.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Test.model_fields": {"fullname": "styx.boutiques.model.Test.model_fields", "modulename": "styx.boutiques.model", "qualname": "Test.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='Name of the test-case', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'invocation': FieldInfo(annotation=Dict[str, Any], required=True)}"}, "styx.boutiques.model.Test.model_computed_fields": {"fullname": "styx.boutiques.model.Test.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Test.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile": {"fullname": "styx.boutiques.model.OutputFile", "modulename": "styx.boutiques.model", "qualname": "OutputFile", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.OutputFile.file_template": {"fullname": "styx.boutiques.model.OutputFile.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFile.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFile.list": {"fullname": "styx.boutiques.model.OutputFile.list", "modulename": "styx.boutiques.model", "qualname": "OutputFile.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ListModel]"}, "styx.boutiques.model.OutputFile.model_config": {"fullname": "styx.boutiques.model.OutputFile.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile.model_fields": {"fullname": "styx.boutiques.model.OutputFile.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, metadata=[MinLen(min_length=1)]), 'list': FieldInfo(annotation=Union[ListModel, NoneType], required=False)}"}, "styx.boutiques.model.OutputFile.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFile.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.FileTemplate": {"fullname": "styx.boutiques.model.FileTemplate", "modulename": "styx.boutiques.model", "qualname": "FileTemplate", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.boutiques.model.FileTemplate.bool_False": {"fullname": "styx.boutiques.model.FileTemplate.bool_False", "modulename": "styx.boutiques.model", "qualname": "FileTemplate.bool_False", "kind": "variable", "doc": "

\n", "default_value": "<FileTemplate.bool_False: False>"}, "styx.boutiques.model.OutputFile1": {"fullname": "styx.boutiques.model.OutputFile1", "modulename": "styx.boutiques.model", "qualname": "OutputFile1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.OutputFile1.file_template": {"fullname": "styx.boutiques.model.OutputFile1.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.FileTemplate]"}, "styx.boutiques.model.OutputFile1.model_config": {"fullname": "styx.boutiques.model.OutputFile1.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFile1.model_fields": {"fullname": "styx.boutiques.model.OutputFile1.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[FileTemplate, NoneType], required=False, alias='file-template', alias_priority=2)}"}, "styx.boutiques.model.OutputFile1.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFile1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFile1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ConditionalPathTemplateItem": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ConditionalPathTemplateItem.propertyNames": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.propertyNames", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.propertyNames", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Any]"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_config": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_config", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_fields": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_fields", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'propertyNames': FieldInfo(annotation=Union[Any, NoneType], required=False)}"}, "styx.boutiques.model.ConditionalPathTemplateItem.model_computed_fields": {"fullname": "styx.boutiques.model.ConditionalPathTemplateItem.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ConditionalPathTemplateItem.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFiles": {"fullname": "styx.boutiques.model.OutputFiles", "modulename": "styx.boutiques.model", "qualname": "OutputFiles", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "OutputFile"}, "styx.boutiques.model.OutputFiles.model_config": {"fullname": "styx.boutiques.model.OutputFiles.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.OutputFiles.id": {"fullname": "styx.boutiques.model.OutputFiles.id", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.OutputFiles.name": {"fullname": "styx.boutiques.model.OutputFiles.name", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.OutputFiles.description": {"fullname": "styx.boutiques.model.OutputFiles.description", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.value_key": {"fullname": "styx.boutiques.model.OutputFiles.value_key", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.path_template": {"fullname": "styx.boutiques.model.OutputFiles.path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.OutputFiles.conditional_path_template": {"fullname": "styx.boutiques.model.OutputFiles.conditional_path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.conditional_path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ConditionalPathTemplateItem]]"}, "styx.boutiques.model.OutputFiles.path_template_stripped_extensions": {"fullname": "styx.boutiques.model.OutputFiles.path_template_stripped_extensions", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.path_template_stripped_extensions", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles.list": {"fullname": "styx.boutiques.model.OutputFiles.list", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.optional": {"fullname": "styx.boutiques.model.OutputFiles.optional", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.command_line_flag": {"fullname": "styx.boutiques.model.OutputFiles.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.command_line_flag_separator": {"fullname": "styx.boutiques.model.OutputFiles.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles.uses_absolute_path": {"fullname": "styx.boutiques.model.OutputFiles.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles.file_template": {"fullname": "styx.boutiques.model.OutputFiles.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles.model_fields": {"fullname": "styx.boutiques.model.OutputFiles.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, description='An array of strings that may contain value keys. Each item will be a line in the configuration file.', metadata=[MinLen(min_length=1)]), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output is a list of value.'), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file"', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable output name. Example: 'Data file'", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Output description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the output value and/or flag at runtime.'), 'path_template': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='path-template', alias_priority=2, description='Describes the output file path relatively to the execution directory. May contain input value keys and wildcards. Example: "results/[INPUT1]_brain*.mnc".'), 'conditional_path_template': FieldInfo(annotation=Union[List[ConditionalPathTemplateItem], NoneType], required=False, alias='conditional-path-template', alias_priority=2, description='List of objects containing boolean statement (Limited python syntax: ==, !=, <, >, <=, >=, and, or) and output file paths relative to the execution directory, assign path of first true boolean statement. May contain input value keys, "default" object required if "optional" set to True . Example list: "[{"[PARAM1] > 8": "outputs/[INPUT1].txt"}, {"default": "outputs/default.txt"}]".', metadata=[MinLen(min_length=1)]), 'path_template_stripped_extensions': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='path-template-stripped-extensions', alias_priority=2, description='List of file extensions that will be stripped from the input values before being substituted in the path template. Example: [".nii",".nii.gz"].'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output may not be produced by the tool.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the output, involved in the value-key substitution. Examples: -o, --output'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this output filepath will be given as an absolute path.')}"}, "styx.boutiques.model.OutputFiles.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFiles.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.OutputFiles1": {"fullname": "styx.boutiques.model.OutputFiles1", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "OutputFile1"}, "styx.boutiques.model.OutputFiles1.model_config": {"fullname": "styx.boutiques.model.OutputFiles1.model_config", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.OutputFiles1.id": {"fullname": "styx.boutiques.model.OutputFiles1.id", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.id", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]"}, "styx.boutiques.model.OutputFiles1.name": {"fullname": "styx.boutiques.model.OutputFiles1.name", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.OutputFiles1.description": {"fullname": "styx.boutiques.model.OutputFiles1.description", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.description", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.value_key": {"fullname": "styx.boutiques.model.OutputFiles1.value_key", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.value_key", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.path_template": {"fullname": "styx.boutiques.model.OutputFiles1.path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.OutputFiles1.conditional_path_template": {"fullname": "styx.boutiques.model.OutputFiles1.conditional_path_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.conditional_path_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ConditionalPathTemplateItem]]"}, "styx.boutiques.model.OutputFiles1.path_template_stripped_extensions": {"fullname": "styx.boutiques.model.OutputFiles1.path_template_stripped_extensions", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.path_template_stripped_extensions", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles1.list": {"fullname": "styx.boutiques.model.OutputFiles1.list", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.list", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.optional": {"fullname": "styx.boutiques.model.OutputFiles1.optional", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.optional", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.command_line_flag": {"fullname": "styx.boutiques.model.OutputFiles1.command_line_flag", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.command_line_flag_separator": {"fullname": "styx.boutiques.model.OutputFiles1.command_line_flag_separator", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.command_line_flag_separator", "kind": "variable", "doc": "

\n", "annotation": ": Optional[str]"}, "styx.boutiques.model.OutputFiles1.uses_absolute_path": {"fullname": "styx.boutiques.model.OutputFiles1.uses_absolute_path", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.uses_absolute_path", "kind": "variable", "doc": "

\n", "annotation": ": Optional[bool]"}, "styx.boutiques.model.OutputFiles1.file_template": {"fullname": "styx.boutiques.model.OutputFiles1.file_template", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.file_template", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[str]]"}, "styx.boutiques.model.OutputFiles1.model_fields": {"fullname": "styx.boutiques.model.OutputFiles1.model_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'file_template': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='file-template', alias_priority=2, description='An array of strings that may contain value keys. Each item will be a line in the configuration file.', metadata=[MinLen(min_length=1)]), 'id': FieldInfo(annotation=str, required=True, description='A short, unique, informative identifier containing only alphanumeric characters and underscores. Typically used to generate variable names. Example: "data_file"', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern='^[0-9,_,a-z,A-Z]*$')]), 'name': FieldInfo(annotation=str, required=True, description="A human-readable output name. Example: 'Data file'", metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=Union[str, NoneType], required=False, description='Output description.'), 'value_key': FieldInfo(annotation=Union[str, NoneType], required=False, alias='value-key', alias_priority=2, description='A string contained in command-line, substituted by the output value and/or flag at runtime.'), 'path_template': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='path-template', alias_priority=2, description='Describes the output file path relatively to the execution directory. May contain input value keys and wildcards. Example: "results/[INPUT1]_brain*.mnc".'), 'conditional_path_template': FieldInfo(annotation=Union[List[ConditionalPathTemplateItem], NoneType], required=False, alias='conditional-path-template', alias_priority=2, description='List of objects containing boolean statement (Limited python syntax: ==, !=, <, >, <=, >=, and, or) and output file paths relative to the execution directory, assign path of first true boolean statement. May contain input value keys, "default" object required if "optional" set to True . Example list: "[{"[PARAM1] > 8": "outputs/[INPUT1].txt"}, {"default": "outputs/default.txt"}]".', metadata=[MinLen(min_length=1)]), 'path_template_stripped_extensions': FieldInfo(annotation=Union[List[str], NoneType], required=False, alias='path-template-stripped-extensions', alias_priority=2, description='List of file extensions that will be stripped from the input values before being substituted in the path template. Example: [".nii",".nii.gz"].'), 'list': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output is a list of value.'), 'optional': FieldInfo(annotation=Union[bool, NoneType], required=False, description='True if output may not be produced by the tool.'), 'command_line_flag': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag', alias_priority=2, description='Option flag of the output, involved in the value-key substitution. Examples: -o, --output'), 'command_line_flag_separator': FieldInfo(annotation=Union[str, NoneType], required=False, alias='command-line-flag-separator', alias_priority=2, description='Separator used between flags and their arguments. Defaults to a single space.'), 'uses_absolute_path': FieldInfo(annotation=Union[bool, NoneType], required=False, alias='uses-absolute-path', alias_priority=2, description='Specifies that this output filepath will be given as an absolute path.')}"}, "styx.boutiques.model.OutputFiles1.model_computed_fields": {"fullname": "styx.boutiques.model.OutputFiles1.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "OutputFiles1.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.SuggestedResources": {"fullname": "styx.boutiques.model.SuggestedResources", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.SuggestedResources.cpu_cores": {"fullname": "styx.boutiques.model.SuggestedResources.cpu_cores", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.cpu_cores", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[int, None, Interval(gt=None, ge=1, lt=None, le=None), None]]"}, "styx.boutiques.model.SuggestedResources.ram": {"fullname": "styx.boutiques.model.SuggestedResources.ram", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.ram", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.disk_space": {"fullname": "styx.boutiques.model.SuggestedResources.disk_space", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.disk_space", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.nodes": {"fullname": "styx.boutiques.model.SuggestedResources.nodes", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.nodes", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[int, None, Interval(gt=None, ge=1, lt=None, le=None), None]]"}, "styx.boutiques.model.SuggestedResources.walltime_estimate": {"fullname": "styx.boutiques.model.SuggestedResources.walltime_estimate", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.walltime_estimate", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[float, None, Interval(gt=None, ge=0.0, lt=None, le=None), None, None]]"}, "styx.boutiques.model.SuggestedResources.model_config": {"fullname": "styx.boutiques.model.SuggestedResources.model_config", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_config", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.SuggestedResources.model_fields": {"fullname": "styx.boutiques.model.SuggestedResources.model_fields", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'cpu_cores': FieldInfo(annotation=Union[Annotated[int, NoneType, Interval, NoneType], NoneType], required=False, alias='cpu-cores', alias_priority=2, description='The requested number of cpu cores to run the described application'), 'ram': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, description='The requested number of GB RAM to run the described application'), 'disk_space': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, alias='disk-space', alias_priority=2, description='The requested number of GB of storage to run the described application'), 'nodes': FieldInfo(annotation=Union[Annotated[int, NoneType, Interval, NoneType], NoneType], required=False, description='The requested number of nodes to spread the described application across'), 'walltime_estimate': FieldInfo(annotation=Union[Annotated[float, NoneType, Interval, NoneType, NoneType], NoneType], required=False, alias='walltime-estimate', alias_priority=2, description='Estimated wall time of a task in seconds.')}"}, "styx.boutiques.model.SuggestedResources.model_computed_fields": {"fullname": "styx.boutiques.model.SuggestedResources.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "SuggestedResources.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.ErrorCode": {"fullname": "styx.boutiques.model.ErrorCode", "modulename": "styx.boutiques.model", "qualname": "ErrorCode", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.ErrorCode.model_config": {"fullname": "styx.boutiques.model.ErrorCode.model_config", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.ErrorCode.code": {"fullname": "styx.boutiques.model.ErrorCode.code", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.code", "kind": "variable", "doc": "

\n", "annotation": ": int"}, "styx.boutiques.model.ErrorCode.description": {"fullname": "styx.boutiques.model.ErrorCode.description", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.boutiques.model.ErrorCode.model_fields": {"fullname": "styx.boutiques.model.ErrorCode.model_fields", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'code': FieldInfo(annotation=int, required=True, description='Value of the exit code'), 'description': FieldInfo(annotation=str, required=True, description='Description of the error code.')}"}, "styx.boutiques.model.ErrorCode.model_computed_fields": {"fullname": "styx.boutiques.model.ErrorCode.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "ErrorCode.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.model.Tool": {"fullname": "styx.boutiques.model.Tool", "modulename": "styx.boutiques.model", "qualname": "Tool", "kind": "class", "doc": "

Usage docs: https://docs.pydantic.dev/2.6/concepts/models/

\n\n

A base class for creating Pydantic models.

\n\n
Attributes:
\n\n
    \n
  • __class_vars__: The names of classvars defined on the model.
    • \n
  • __private_attributes__: Metadata about the private attributes of the model.
    • \n
  • __signature__: The signature for instantiating the model.
    • \n
  • __pydantic_complete__: Whether model building is completed, or if there are still undefined fields.
    • \n
  • __pydantic_core_schema__: The pydantic-core schema used to build the SchemaValidator and SchemaSerializer.
    • \n
  • __pydantic_custom_init__: Whether the model has a custom __init__ function.
    • \n
  • __pydantic_decorators__: Metadata containing the decorators defined on the model.\nThis replaces Model.__validators__ and Model.__root_validators__ from Pydantic V1.
    • \n
  • __pydantic_generic_metadata__: Metadata for generic models; contains data used for a similar purpose to\n__args__, __origin__, __parameters__ in typing-module generics. May eventually be replaced by these.
    • \n
  • __pydantic_parent_namespace__: Parent namespace of the model, used for automatic rebuilding of models.
    • \n
  • __pydantic_post_init__: The name of the post-init method for the model, if defined.
    • \n
  • __pydantic_root_model__: Whether the model is a RootModel.
    • \n
  • __pydantic_serializer__: The pydantic-core SchemaSerializer used to dump instances of the model.
    • \n
  • __pydantic_validator__: The pydantic-core SchemaValidator used to validate instances of the model.
    • \n
  • __pydantic_extra__: An instance attribute with the values of extra fields from validation when\nmodel_config['extra'] == 'allow'.
    • \n
  • __pydantic_fields_set__: An instance attribute with the names of fields explicitly set.
    • \n
  • __pydantic_private__: Instance attribute with the values of private attributes set on the model instance.
    • \n
\n", "bases": "pydantic.main.BaseModel"}, "styx.boutiques.model.Tool.model_config": {"fullname": "styx.boutiques.model.Tool.model_config", "modulename": "styx.boutiques.model", "qualname": "Tool.model_config", "kind": "variable", "doc": "

\n", "default_value": "{'extra': 'forbid'}"}, "styx.boutiques.model.Tool.name": {"fullname": "styx.boutiques.model.Tool.name", "modulename": "styx.boutiques.model", "qualname": "Tool.name", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.tool_version": {"fullname": "styx.boutiques.model.Tool.tool_version", "modulename": "styx.boutiques.model", "qualname": "Tool.tool_version", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.description": {"fullname": "styx.boutiques.model.Tool.description", "modulename": "styx.boutiques.model", "qualname": "Tool.description", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.deprecated_by_doi": {"fullname": "styx.boutiques.model.Tool.deprecated_by_doi", "modulename": "styx.boutiques.model", "qualname": "Tool.deprecated_by_doi", "kind": "variable", "doc": "

\n", "annotation": ": Union[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)], bool, NoneType]"}, "styx.boutiques.model.Tool.author": {"fullname": "styx.boutiques.model.Tool.author", "modulename": "styx.boutiques.model", "qualname": "Tool.author", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.url": {"fullname": "styx.boutiques.model.Tool.url", "modulename": "styx.boutiques.model", "qualname": "Tool.url", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.descriptor_url": {"fullname": "styx.boutiques.model.Tool.descriptor_url", "modulename": "styx.boutiques.model", "qualname": "Tool.descriptor_url", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.doi": {"fullname": "styx.boutiques.model.Tool.doi", "modulename": "styx.boutiques.model", "qualname": "Tool.doi", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.shell": {"fullname": "styx.boutiques.model.Tool.shell", "modulename": "styx.boutiques.model", "qualname": "Tool.shell", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.tool_doi": {"fullname": "styx.boutiques.model.Tool.tool_doi", "modulename": "styx.boutiques.model", "qualname": "Tool.tool_doi", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]]"}, "styx.boutiques.model.Tool.command_line": {"fullname": "styx.boutiques.model.Tool.command_line", "modulename": "styx.boutiques.model", "qualname": "Tool.command_line", "kind": "variable", "doc": "

\n", "annotation": ": Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]"}, "styx.boutiques.model.Tool.container_image": {"fullname": "styx.boutiques.model.Tool.container_image", "modulename": "styx.boutiques.model", "qualname": "Tool.container_image", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.ContainerImage]"}, "styx.boutiques.model.Tool.schema_version": {"fullname": "styx.boutiques.model.Tool.schema_version", "modulename": "styx.boutiques.model", "qualname": "Tool.schema_version", "kind": "variable", "doc": "

\n", "annotation": ": styx.boutiques.model.SchemaVersion"}, "styx.boutiques.model.Tool.environment_variables": {"fullname": "styx.boutiques.model.Tool.environment_variables", "modulename": "styx.boutiques.model", "qualname": "Tool.environment_variables", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.EnvironmentVariable]]"}, "styx.boutiques.model.Tool.groups": {"fullname": "styx.boutiques.model.Tool.groups", "modulename": "styx.boutiques.model", "qualname": "Tool.groups", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.Group]]"}, "styx.boutiques.model.Tool.inputs": {"fullname": "styx.boutiques.model.Tool.inputs", "modulename": "styx.boutiques.model", "qualname": "Tool.inputs", "kind": "variable", "doc": "

\n", "annotation": ": List[Union[styx.boutiques.model.Inputs, styx.boutiques.model.Inputs1]]"}, "styx.boutiques.model.Tool.tests": {"fullname": "styx.boutiques.model.Tool.tests", "modulename": "styx.boutiques.model", "qualname": "Tool.tests", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.Test]]"}, "styx.boutiques.model.Tool.online_platform_urls": {"fullname": "styx.boutiques.model.Tool.online_platform_urls", "modulename": "styx.boutiques.model", "qualname": "Tool.online_platform_urls", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Annotated[str, StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=None, max_length=None, pattern='^https?://')]]]"}, "styx.boutiques.model.Tool.output_files": {"fullname": "styx.boutiques.model.Tool.output_files", "modulename": "styx.boutiques.model", "qualname": "Tool.output_files", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[Union[styx.boutiques.model.OutputFiles, styx.boutiques.model.OutputFiles1]]]"}, "styx.boutiques.model.Tool.invocation_schema": {"fullname": "styx.boutiques.model.Tool.invocation_schema", "modulename": "styx.boutiques.model", "qualname": "Tool.invocation_schema", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Tool.suggested_resources": {"fullname": "styx.boutiques.model.Tool.suggested_resources", "modulename": "styx.boutiques.model", "qualname": "Tool.suggested_resources", "kind": "variable", "doc": "

\n", "annotation": ": Optional[styx.boutiques.model.SuggestedResources]"}, "styx.boutiques.model.Tool.tags": {"fullname": "styx.boutiques.model.Tool.tags", "modulename": "styx.boutiques.model", "qualname": "Tool.tags", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Union[str, List[str]]]]"}, "styx.boutiques.model.Tool.error_codes": {"fullname": "styx.boutiques.model.Tool.error_codes", "modulename": "styx.boutiques.model", "qualname": "Tool.error_codes", "kind": "variable", "doc": "

\n", "annotation": ": Optional[List[styx.boutiques.model.ErrorCode]]"}, "styx.boutiques.model.Tool.custom": {"fullname": "styx.boutiques.model.Tool.custom", "modulename": "styx.boutiques.model", "qualname": "Tool.custom", "kind": "variable", "doc": "

\n", "annotation": ": Optional[Dict[str, Any]]"}, "styx.boutiques.model.Tool.model_fields": {"fullname": "styx.boutiques.model.Tool.model_fields", "modulename": "styx.boutiques.model", "qualname": "Tool.model_fields", "kind": "variable", "doc": "

\n", "default_value": "{'name': FieldInfo(annotation=str, required=True, description='Tool name.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'tool_version': FieldInfo(annotation=str, required=True, alias='tool-version', alias_priority=2, description='Tool version.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=str, required=True, description='Tool description.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'deprecated_by_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], bool, NoneType], required=False, alias='deprecated-by-doi', alias_priority=2, description="doi of the tool that deprecates the current one. May be set to 'true' if the current tool is deprecated but no specific tool deprecates it."), 'author': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool author name(s).'), 'url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool URL.'), 'descriptor_url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='descriptor-url', alias_priority=2, description='Link to the descriptor itself (e.g. the GitHub repo where it is hosted).'), 'doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='DOI of the descriptor (not of the tool itself).'), 'shell': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Absolute path of the shell interpreter to use in the container (defaults to /bin/sh).'), 'tool_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='tool-doi', alias_priority=2, description='DOI of the tool (not of the descriptor).'), 'command_line': FieldInfo(annotation=str, required=True, alias='command-line', alias_priority=2, description='A string that describes the tool command line, where input and output values are identified by "keys". At runtime, command-line keys are substituted with flags and values.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'container_image': FieldInfo(annotation=Union[ContainerImage, NoneType], required=False, alias='container-image', alias_priority=2), 'schema_version': FieldInfo(annotation=SchemaVersion, required=True, alias='schema-version', alias_priority=2, description='Version of the schema used.'), 'environment_variables': FieldInfo(annotation=Union[List[EnvironmentVariable], NoneType], required=False, alias='environment-variables', alias_priority=2, description='An array of key-value pairs specifying environment variable names and their values to be used in the execution environment.', metadata=[MinLen(min_length=1)]), 'groups': FieldInfo(annotation=Union[List[Group], NoneType], required=False, description='Sets of identifiers of inputs, each specifying an input group.', metadata=[MinLen(min_length=1)]), 'inputs': FieldInfo(annotation=List[Union[Inputs, Inputs1]], required=True, metadata=[MinLen(min_length=1)]), 'tests': FieldInfo(annotation=Union[List[Test], NoneType], required=False, metadata=[MinLen(min_length=1)]), 'online_platform_urls': FieldInfo(annotation=Union[List[Annotated[str, StringConstraints]], NoneType], required=False, alias='online-platform-urls', alias_priority=2, description='Online platform URLs from which the tool can be executed.'), 'output_files': FieldInfo(annotation=Union[List[Union[OutputFiles, OutputFiles1]], NoneType], required=False, alias='output-files', alias_priority=2, metadata=[MinLen(min_length=1)]), 'invocation_schema': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='invocation-schema', alias_priority=2), 'suggested_resources': FieldInfo(annotation=Union[SuggestedResources, NoneType], required=False, alias='suggested-resources', alias_priority=2), 'tags': FieldInfo(annotation=Union[Dict[str, Union[str, List[str]]], NoneType], required=False, description='A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.'), 'error_codes': FieldInfo(annotation=Union[List[ErrorCode], NoneType], required=False, alias='error-codes', alias_priority=2, description='An array of key-value pairs specifying exit codes and their description. Can be used for tools to specify the meaning of particular exit codes. Exit code 0 is assumed to indicate a successful execution.', metadata=[MinLen(min_length=1)]), 'custom': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False)}"}, "styx.boutiques.model.Tool.model_computed_fields": {"fullname": "styx.boutiques.model.Tool.model_computed_fields", "modulename": "styx.boutiques.model", "qualname": "Tool.model_computed_fields", "kind": "variable", "doc": "

\n", "default_value": "{}"}, "styx.boutiques.utils": {"fullname": "styx.boutiques.utils", "modulename": "styx.boutiques.utils", "kind": "module", "doc": "

\n"}, "styx.boutiques.utils.boutiques_from_dict": {"fullname": "styx.boutiques.utils.boutiques_from_dict", "modulename": "styx.boutiques.utils", "qualname": "boutiques_from_dict", "kind": "function", "doc": "

Create a Boutiques model from a dictionary.

\n\n
Arguments:
\n\n
    \n
  • data (dict): The dictionary.
    • \n
\n\n
Returns:
\n\n
\n

styx.boutiques.model.Tool: The Boutiques model.

\n
\n", "signature": "(data: dict) -> styx.boutiques.model.Tool:", "funcdef": "def"}, "styx.boutiques.utils.boutiques_split_command": {"fullname": "styx.boutiques.utils.boutiques_split_command", "modulename": "styx.boutiques.utils", "qualname": "boutiques_split_command", "kind": "function", "doc": "

Split a Boutiques command into a list of arguments.

\n\n
Arguments:
\n\n
    \n
  • command (str): The Boutiques command.
    • \n
\n\n
Returns:
\n\n
\n

list[str]: The list of arguments.

\n
\n", "signature": "(command: str) -> list[str]:", "funcdef": "def"}, "styx.compiler": {"fullname": "styx.compiler", "modulename": "styx.compiler", "kind": "module", "doc": "

Boutiques to python compiler.

\n"}, "styx.compiler.compile": {"fullname": "styx.compiler.compile", "modulename": "styx.compiler.compile", "kind": "module", "doc": "

Compilation of Styx data model to Python code.

\n"}, "styx.compiler.compile.common": {"fullname": "styx.compiler.compile.common", "modulename": "styx.compiler.compile.common", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.common.SharedScopes": {"fullname": "styx.compiler.compile.common.SharedScopes", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes", "kind": "class", "doc": "

\n"}, "styx.compiler.compile.common.SharedScopes.__init__": {"fullname": "styx.compiler.compile.common.SharedScopes.__init__", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.__init__", "kind": "function", "doc": "

\n", "signature": "(\tmodule: styx.pycodegen.scope.Scope,\tfunction: styx.pycodegen.scope.Scope,\toutput_tuple: styx.pycodegen.scope.Scope)"}, "styx.compiler.compile.common.SharedScopes.module": {"fullname": "styx.compiler.compile.common.SharedScopes.module", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.module", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedScopes.function": {"fullname": "styx.compiler.compile.common.SharedScopes.function", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.function", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedScopes.output_tuple": {"fullname": "styx.compiler.compile.common.SharedScopes.output_tuple", "modulename": "styx.compiler.compile.common", "qualname": "SharedScopes.output_tuple", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope"}, "styx.compiler.compile.common.SharedSymbols": {"fullname": "styx.compiler.compile.common.SharedSymbols", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols", "kind": "class", "doc": "

\n"}, "styx.compiler.compile.common.SharedSymbols.__init__": {"fullname": "styx.compiler.compile.common.SharedSymbols.__init__", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.__init__", "kind": "function", "doc": "

\n", "signature": "(\tfunction: str,\toutput_class: str,\tmetadata: str,\trunner: str,\texecution: str,\tcargs: str,\tret: str)"}, "styx.compiler.compile.common.SharedSymbols.function": {"fullname": "styx.compiler.compile.common.SharedSymbols.function", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.function", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.output_class": {"fullname": "styx.compiler.compile.common.SharedSymbols.output_class", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.output_class", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.metadata": {"fullname": "styx.compiler.compile.common.SharedSymbols.metadata", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.metadata", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.runner": {"fullname": "styx.compiler.compile.common.SharedSymbols.runner", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.runner", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.execution": {"fullname": "styx.compiler.compile.common.SharedSymbols.execution", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.execution", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.cargs": {"fullname": "styx.compiler.compile.common.SharedSymbols.cargs", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.cargs", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.common.SharedSymbols.ret": {"fullname": "styx.compiler.compile.common.SharedSymbols.ret", "modulename": "styx.compiler.compile.common", "qualname": "SharedSymbols.ret", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.compiler.compile.constraints": {"fullname": "styx.compiler.compile.constraints", "modulename": "styx.compiler.compile.constraints", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.constraints.generate_input_constraint_validation": {"fullname": "styx.compiler.compile.constraints.generate_input_constraint_validation", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_input_constraint_validation", "kind": "function", "doc": "

Generate input constraint validation code for an input argument.

\n", "signature": "(\tbuf: list[str],\tinput_: styx.model.core.WithSymbol[styx.model.core.InputArgument]) -> None:", "funcdef": "def"}, "styx.compiler.compile.constraints.generate_group_constraint_validation": {"fullname": "styx.compiler.compile.constraints.generate_group_constraint_validation", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_group_constraint_validation", "kind": "function", "doc": "

\n", "signature": "(\tbuf: list[str],\tgroup: styx.model.core.GroupConstraint,\targs_lookup: dict[str, styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.constraints.generate_constraint_checks": {"fullname": "styx.compiler.compile.constraints.generate_constraint_checks", "modulename": "styx.compiler.compile.constraints", "qualname": "generate_constraint_checks", "kind": "function", "doc": "

\n", "signature": "(\tfunc: styx.pycodegen.core.PyFunc,\tdescriptor: styx.model.core.Descriptor,\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]],\tinputs_lookup_bt_name: dict[str, styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.definitions": {"fullname": "styx.compiler.compile.definitions", "modulename": "styx.compiler.compile.definitions", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.definitions.compile_definitions": {"fullname": "styx.compiler.compile.definitions.compile_definitions", "modulename": "styx.compiler.compile.definitions", "qualname": "compile_definitions", "kind": "function", "doc": "

Compile the definitions to Python code.

\n", "signature": "() -> str:", "funcdef": "def"}, "styx.compiler.compile.definitions.generate_definitions": {"fullname": "styx.compiler.compile.definitions.generate_definitions", "modulename": "styx.compiler.compile.definitions", "qualname": "generate_definitions", "kind": "function", "doc": "

Generate the definition code in the header.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tsettings: styx.compiler.settings.CompilerSettings) -> None:", "funcdef": "def"}, "styx.compiler.compile.descriptor": {"fullname": "styx.compiler.compile.descriptor", "modulename": "styx.compiler.compile.descriptor", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.descriptor.compile_descriptor": {"fullname": "styx.compiler.compile.descriptor.compile_descriptor", "modulename": "styx.compiler.compile.descriptor", "qualname": "compile_descriptor", "kind": "function", "doc": "

Compile a descriptor to Python code.

\n", "signature": "(\tdescriptor: styx.model.core.Descriptor,\tsettings: styx.compiler.settings.CompilerSettings) -> str:", "funcdef": "def"}, "styx.compiler.compile.inputs": {"fullname": "styx.compiler.compile.inputs", "modulename": "styx.compiler.compile.inputs", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.inputs.build_input_arguments": {"fullname": "styx.compiler.compile.inputs.build_input_arguments", "modulename": "styx.compiler.compile.inputs", "qualname": "build_input_arguments", "kind": "function", "doc": "

Build Python function arguments from input arguments.

\n", "signature": "(\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> list[styx.pycodegen.core.PyArg]:", "funcdef": "def"}, "styx.compiler.compile.inputs.generate_command_line_args_building": {"fullname": "styx.compiler.compile.inputs.generate_command_line_args_building", "modulename": "styx.compiler.compile.inputs", "qualname": "generate_command_line_args_building", "kind": "function", "doc": "

Generate the command line arguments building code.

\n", "signature": "(\tdescriptor: styx.model.core.Descriptor,\tsymbols: styx.compiler.compile.common.SharedSymbols,\tfunc: styx.pycodegen.core.PyFunc,\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.metadata": {"fullname": "styx.compiler.compile.metadata", "modulename": "styx.compiler.compile.metadata", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.metadata.generate_static_metadata": {"fullname": "styx.compiler.compile.metadata.generate_static_metadata", "modulename": "styx.compiler.compile.metadata", "qualname": "generate_static_metadata", "kind": "function", "doc": "

Generate the static metadata.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tdescriptor: styx.model.core.Descriptor,\tsymbols: styx.compiler.compile.common.SharedSymbols) -> None:", "funcdef": "def"}, "styx.compiler.compile.outputs": {"fullname": "styx.compiler.compile.outputs", "modulename": "styx.compiler.compile.outputs", "kind": "module", "doc": "

\n"}, "styx.compiler.compile.outputs.generate_outputs_definition": {"fullname": "styx.compiler.compile.outputs.generate_outputs_definition", "modulename": "styx.compiler.compile.outputs", "qualname": "generate_outputs_definition", "kind": "function", "doc": "

Generate the static output class definition.

\n", "signature": "(\tmodule: styx.pycodegen.core.PyModule,\tsymbols: styx.compiler.compile.common.SharedSymbols,\toutputs: list[styx.model.core.WithSymbol[styx.model.core.OutputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.compile.outputs.generate_output_building": {"fullname": "styx.compiler.compile.outputs.generate_output_building", "modulename": "styx.compiler.compile.outputs", "qualname": "generate_output_building", "kind": "function", "doc": "

Generate the output building code.

\n", "signature": "(\tfunc: styx.pycodegen.core.PyFunc,\tscopes: styx.compiler.compile.common.SharedScopes,\tsymbols: styx.compiler.compile.common.SharedSymbols,\toutputs: list[styx.model.core.WithSymbol[styx.model.core.OutputArgument]],\tinputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None:", "funcdef": "def"}, "styx.compiler.core": {"fullname": "styx.compiler.core", "modulename": "styx.compiler.core", "kind": "module", "doc": "

\n"}, "styx.compiler.core.compile_boutiques_dict": {"fullname": "styx.compiler.core.compile_boutiques_dict", "modulename": "styx.compiler.core", "qualname": "compile_boutiques_dict", "kind": "function", "doc": "

\n", "signature": "(\tboutiques_descriptor: dict,\tsettings: styx.compiler.settings.CompilerSettings) -> str:", "funcdef": "def"}, "styx.compiler.settings": {"fullname": "styx.compiler.settings", "modulename": "styx.compiler.settings", "kind": "module", "doc": "

Compiler settings.

\n"}, "styx.compiler.settings.DefsMode": {"fullname": "styx.compiler.settings.DefsMode", "modulename": "styx.compiler.settings", "qualname": "DefsMode", "kind": "class", "doc": "

Runtime definitions mode.

\n", "bases": "enum.Enum"}, "styx.compiler.settings.DefsMode.INLINE": {"fullname": "styx.compiler.settings.DefsMode.INLINE", "modulename": "styx.compiler.settings", "qualname": "DefsMode.INLINE", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.INLINE: 0>"}, "styx.compiler.settings.DefsMode.IMPORT": {"fullname": "styx.compiler.settings.DefsMode.IMPORT", "modulename": "styx.compiler.settings", "qualname": "DefsMode.IMPORT", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.IMPORT: 1>"}, "styx.compiler.settings.DefsMode.DEFS_ONLY": {"fullname": "styx.compiler.settings.DefsMode.DEFS_ONLY", "modulename": "styx.compiler.settings", "qualname": "DefsMode.DEFS_ONLY", "kind": "variable", "doc": "

\n", "default_value": "<DefsMode.DEFS_ONLY: 2>"}, "styx.compiler.settings.CompilerSettings": {"fullname": "styx.compiler.settings.CompilerSettings", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings", "kind": "class", "doc": "

Compiler settings.

\n"}, "styx.compiler.settings.CompilerSettings.__init__": {"fullname": "styx.compiler.settings.CompilerSettings.__init__", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.__init__", "kind": "function", "doc": "

\n", "signature": "(\tinput_path: pathlib.Path | None = None,\toutput_path: pathlib.Path | None = None,\tdefs_module_path: str | None = None,\tdefs_mode: styx.compiler.settings.DefsMode = <DefsMode.IMPORT: 1>)"}, "styx.compiler.settings.CompilerSettings.input_path": {"fullname": "styx.compiler.settings.CompilerSettings.input_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.input_path", "kind": "variable", "doc": "

\n", "annotation": ": pathlib.Path | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.output_path": {"fullname": "styx.compiler.settings.CompilerSettings.output_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.output_path", "kind": "variable", "doc": "

\n", "annotation": ": pathlib.Path | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.defs_module_path": {"fullname": "styx.compiler.settings.CompilerSettings.defs_module_path", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.defs_module_path", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.compiler.settings.CompilerSettings.defs_mode": {"fullname": "styx.compiler.settings.CompilerSettings.defs_mode", "modulename": "styx.compiler.settings", "qualname": "CompilerSettings.defs_mode", "kind": "variable", "doc": "

\n", "annotation": ": styx.compiler.settings.DefsMode", "default_value": "<DefsMode.IMPORT: 1>"}, "styx.compiler.utils": {"fullname": "styx.compiler.utils", "modulename": "styx.compiler.utils", "kind": "module", "doc": "

Compiler utilities.

\n"}, "styx.compiler.utils.optional_float_to_int": {"fullname": "styx.compiler.utils.optional_float_to_int", "modulename": "styx.compiler.utils", "qualname": "optional_float_to_int", "kind": "function", "doc": "

Convert an optional float to an optional int.

\n", "signature": "(value: float | None) -> int | None:", "funcdef": "def"}, "styx.main": {"fullname": "styx.main", "modulename": "styx.main", "kind": "module", "doc": "

\n"}, "styx.main.load_settings_from_toml": {"fullname": "styx.main.load_settings_from_toml", "modulename": "styx.main", "qualname": "load_settings_from_toml", "kind": "function", "doc": "

Load settings from a TOML file.

\n", "signature": "(\tconfig_path: pathlib.Path,\toverride_input_folder: pathlib.Path | None = None,\toverride_output_folder: pathlib.Path | None = None) -> styx.compiler.settings.CompilerSettings:", "funcdef": "def"}, "styx.main.collect_settings": {"fullname": "styx.main.collect_settings", "modulename": "styx.main", "qualname": "collect_settings", "kind": "function", "doc": "

Collect settings.

\n", "signature": "(\twork_dir: pathlib.Path,\toverride_input_folder: pathlib.Path | None = None,\toverride_output_folder: pathlib.Path | None = None,\toverride_config_file: pathlib.Path | None = None) -> styx.compiler.settings.CompilerSettings:", "funcdef": "def"}, "styx.main.main": {"fullname": "styx.main.main", "modulename": "styx.main", "qualname": "main", "kind": "function", "doc": "

Main entry point.

\n", "signature": "() -> None:", "funcdef": "def"}, "styx.model": {"fullname": "styx.model", "modulename": "styx.model", "kind": "module", "doc": "

Styx data model.

\n"}, "styx.model.core": {"fullname": "styx.model.core", "modulename": "styx.model.core", "kind": "module", "doc": "

\n"}, "styx.model.core.TYPE_INPUT_VALUE_PRIMITIVE": {"fullname": "styx.model.core.TYPE_INPUT_VALUE_PRIMITIVE", "modulename": "styx.model.core", "qualname": "TYPE_INPUT_VALUE_PRIMITIVE", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "str | float | int | bool | pathlib.Path"}, "styx.model.core.TYPE_INPUT_VALUE": {"fullname": "styx.model.core.TYPE_INPUT_VALUE", "modulename": "styx.model.core", "qualname": "TYPE_INPUT_VALUE", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType]"}, "styx.model.core.TYPE_METADATA": {"fullname": "styx.model.core.TYPE_METADATA", "modulename": "styx.model.core", "qualname": "TYPE_METADATA", "kind": "variable", "doc": "

\n", "annotation": ": TypeAlias", "default_value": "Mapping[str, str | int | float]"}, "styx.model.core.InputTypePrimitive": {"fullname": "styx.model.core.InputTypePrimitive", "modulename": "styx.model.core", "qualname": "InputTypePrimitive", "kind": "class", "doc": "

Create a collection of name/value pairs.

\n\n

Example enumeration:

\n\n
\n
>>> class Color(Enum):\n...     RED = 1\n...     BLUE = 2\n...     GREEN = 3\n
\n
\n\n

Access them by:

\n\n
    \n

  • attribute access:

    \n\n
    \n
    >>> Color.RED\n<Color.RED: 1>\n
    \n
    • \n

  • value lookup:

    \n\n
    \n
    >>> Color(1)\n<Color.RED: 1>\n
    \n
    • \n

  • name lookup:

    \n\n
    \n
    >>> Color['RED']\n<Color.RED: 1>\n
    \n
    • \n
\n\n

Enumerations can be iterated over, and know how many members they have:

\n\n
\n
>>> len(Color)\n3\n
\n
\n\n
\n
>>> list(Color)\n[<Color.RED: 1>, <Color.BLUE: 2>, <Color.GREEN: 3>]\n
\n
\n\n

Methods can be added to enumerations, and members can have their own\nattributes -- see the documentation for details.

\n", "bases": "enum.Enum"}, "styx.model.core.InputTypePrimitive.String": {"fullname": "styx.model.core.InputTypePrimitive.String", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.String", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.String: 1>"}, "styx.model.core.InputTypePrimitive.Number": {"fullname": "styx.model.core.InputTypePrimitive.Number", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Number", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Number: 2>"}, "styx.model.core.InputTypePrimitive.Integer": {"fullname": "styx.model.core.InputTypePrimitive.Integer", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Integer", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Integer: 3>"}, "styx.model.core.InputTypePrimitive.File": {"fullname": "styx.model.core.InputTypePrimitive.File", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.File", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.File: 4>"}, "styx.model.core.InputTypePrimitive.Flag": {"fullname": "styx.model.core.InputTypePrimitive.Flag", "modulename": "styx.model.core", "qualname": "InputTypePrimitive.Flag", "kind": "variable", "doc": "

\n", "default_value": "<InputTypePrimitive.Flag: 5>"}, "styx.model.core.InputType": {"fullname": "styx.model.core.InputType", "modulename": "styx.model.core", "qualname": "InputType", "kind": "class", "doc": "

\n"}, "styx.model.core.InputType.__init__": {"fullname": "styx.model.core.InputType.__init__", "modulename": "styx.model.core", "qualname": "InputType.__init__", "kind": "function", "doc": "

\n", "signature": "(\tprimitive: styx.model.core.InputTypePrimitive,\tis_list: bool = False,\tis_optional: bool = False,\tis_enum: bool = False)"}, "styx.model.core.InputType.primitive": {"fullname": "styx.model.core.InputType.primitive", "modulename": "styx.model.core", "qualname": "InputType.primitive", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputTypePrimitive"}, "styx.model.core.InputType.is_list": {"fullname": "styx.model.core.InputType.is_list", "modulename": "styx.model.core", "qualname": "InputType.is_list", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputType.is_optional": {"fullname": "styx.model.core.InputType.is_optional", "modulename": "styx.model.core", "qualname": "InputType.is_optional", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputType.is_enum": {"fullname": "styx.model.core.InputType.is_enum", "modulename": "styx.model.core", "qualname": "InputType.is_enum", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints": {"fullname": "styx.model.core.InputArgumentConstraints", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints", "kind": "class", "doc": "

\n"}, "styx.model.core.InputArgumentConstraints.__init__": {"fullname": "styx.model.core.InputArgumentConstraints.__init__", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.__init__", "kind": "function", "doc": "

\n", "signature": "(\tvalue_min: float | int | None = None,\tvalue_min_exclusive: bool = False,\tvalue_max: float | int | None = None,\tvalue_max_exclusive: bool = False,\tlist_length_min: int | None = None,\tlist_length_max: int | None = None)"}, "styx.model.core.InputArgumentConstraints.value_min": {"fullname": "styx.model.core.InputArgumentConstraints.value_min", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_min", "kind": "variable", "doc": "

\n", "annotation": ": float | int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.value_min_exclusive": {"fullname": "styx.model.core.InputArgumentConstraints.value_min_exclusive", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_min_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints.value_max": {"fullname": "styx.model.core.InputArgumentConstraints.value_max", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_max", "kind": "variable", "doc": "

\n", "annotation": ": float | int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.value_max_exclusive": {"fullname": "styx.model.core.InputArgumentConstraints.value_max_exclusive", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.value_max_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgumentConstraints.list_length_min": {"fullname": "styx.model.core.InputArgumentConstraints.list_length_min", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.list_length_min", "kind": "variable", "doc": "

\n", "annotation": ": int | None", "default_value": "None"}, "styx.model.core.InputArgumentConstraints.list_length_max": {"fullname": "styx.model.core.InputArgumentConstraints.list_length_max", "modulename": "styx.model.core", "qualname": "InputArgumentConstraints.list_length_max", "kind": "variable", "doc": "

\n", "annotation": ": int | None", "default_value": "None"}, "styx.model.core.InputArgument": {"fullname": "styx.model.core.InputArgument", "modulename": "styx.model.core", "qualname": "InputArgument", "kind": "class", "doc": "

\n"}, "styx.model.core.InputArgument.__init__": {"fullname": "styx.model.core.InputArgument.__init__", "modulename": "styx.model.core", "qualname": "InputArgument.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\ttype: styx.model.core.InputType,\tdescription: str,\tconstraints: styx.model.core.InputArgumentConstraints,\thas_default_value: bool = False,\tdefault_value: Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType] = None,\tcommand_line_flag: str | None = None,\tlist_separator: str | None = None,\tenum_values: list[str | float | int | bool | pathlib.Path] | None = None,\tbt_ref: str | None = None)"}, "styx.model.core.InputArgument.name": {"fullname": "styx.model.core.InputArgument.name", "modulename": "styx.model.core", "qualname": "InputArgument.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.InputArgument.type": {"fullname": "styx.model.core.InputArgument.type", "modulename": "styx.model.core", "qualname": "InputArgument.type", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputType"}, "styx.model.core.InputArgument.description": {"fullname": "styx.model.core.InputArgument.description", "modulename": "styx.model.core", "qualname": "InputArgument.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.InputArgument.constraints": {"fullname": "styx.model.core.InputArgument.constraints", "modulename": "styx.model.core", "qualname": "InputArgument.constraints", "kind": "variable", "doc": "

\n", "annotation": ": styx.model.core.InputArgumentConstraints"}, "styx.model.core.InputArgument.has_default_value": {"fullname": "styx.model.core.InputArgument.has_default_value", "modulename": "styx.model.core", "qualname": "InputArgument.has_default_value", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.InputArgument.default_value": {"fullname": "styx.model.core.InputArgument.default_value", "modulename": "styx.model.core", "qualname": "InputArgument.default_value", "kind": "variable", "doc": "

\n", "annotation": ": Union[str, float, int, bool, pathlib.Path, Sequence[str | float | int | bool | pathlib.Path], NoneType]", "default_value": "None"}, "styx.model.core.InputArgument.command_line_flag": {"fullname": "styx.model.core.InputArgument.command_line_flag", "modulename": "styx.model.core", "qualname": "InputArgument.command_line_flag", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.InputArgument.list_separator": {"fullname": "styx.model.core.InputArgument.list_separator", "modulename": "styx.model.core", "qualname": "InputArgument.list_separator", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.InputArgument.enum_values": {"fullname": "styx.model.core.InputArgument.enum_values", "modulename": "styx.model.core", "qualname": "InputArgument.enum_values", "kind": "variable", "doc": "

\n", "annotation": ": list[str | float | int | bool | pathlib.Path] | None", "default_value": "None"}, "styx.model.core.InputArgument.bt_ref": {"fullname": "styx.model.core.InputArgument.bt_ref", "modulename": "styx.model.core", "qualname": "InputArgument.bt_ref", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.model.core.OutputArgument": {"fullname": "styx.model.core.OutputArgument", "modulename": "styx.model.core", "qualname": "OutputArgument", "kind": "class", "doc": "

\n"}, "styx.model.core.OutputArgument.__init__": {"fullname": "styx.model.core.OutputArgument.__init__", "modulename": "styx.model.core", "qualname": "OutputArgument.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\tdescription: str,\tpath_template: str,\toptional: bool = False,\tstripped_file_extensions: list[str] | None = None)"}, "styx.model.core.OutputArgument.name": {"fullname": "styx.model.core.OutputArgument.name", "modulename": "styx.model.core", "qualname": "OutputArgument.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.description": {"fullname": "styx.model.core.OutputArgument.description", "modulename": "styx.model.core", "qualname": "OutputArgument.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.path_template": {"fullname": "styx.model.core.OutputArgument.path_template", "modulename": "styx.model.core", "qualname": "OutputArgument.path_template", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.OutputArgument.optional": {"fullname": "styx.model.core.OutputArgument.optional", "modulename": "styx.model.core", "qualname": "OutputArgument.optional", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.OutputArgument.stripped_file_extensions": {"fullname": "styx.model.core.OutputArgument.stripped_file_extensions", "modulename": "styx.model.core", "qualname": "OutputArgument.stripped_file_extensions", "kind": "variable", "doc": "

\n", "annotation": ": list[str] | None", "default_value": "None"}, "styx.model.core.GroupConstraint": {"fullname": "styx.model.core.GroupConstraint", "modulename": "styx.model.core", "qualname": "GroupConstraint", "kind": "class", "doc": "

\n"}, "styx.model.core.GroupConstraint.__init__": {"fullname": "styx.model.core.GroupConstraint.__init__", "modulename": "styx.model.core", "qualname": "GroupConstraint.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str,\tdescription: str,\tmembers: list[str],\tmembers_mutually_exclusive: bool = False,\tmembers_must_include_one: bool = False,\tmembers_must_include_all_or_none: bool = False)"}, "styx.model.core.GroupConstraint.name": {"fullname": "styx.model.core.GroupConstraint.name", "modulename": "styx.model.core", "qualname": "GroupConstraint.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.GroupConstraint.description": {"fullname": "styx.model.core.GroupConstraint.description", "modulename": "styx.model.core", "qualname": "GroupConstraint.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.GroupConstraint.members": {"fullname": "styx.model.core.GroupConstraint.members", "modulename": "styx.model.core", "qualname": "GroupConstraint.members", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.model.core.GroupConstraint.members_mutually_exclusive": {"fullname": "styx.model.core.GroupConstraint.members_mutually_exclusive", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_mutually_exclusive", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.GroupConstraint.members_must_include_one": {"fullname": "styx.model.core.GroupConstraint.members_must_include_one", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_must_include_one", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.GroupConstraint.members_must_include_all_or_none": {"fullname": "styx.model.core.GroupConstraint.members_must_include_all_or_none", "modulename": "styx.model.core", "qualname": "GroupConstraint.members_must_include_all_or_none", "kind": "variable", "doc": "

\n", "annotation": ": bool", "default_value": "False"}, "styx.model.core.Descriptor": {"fullname": "styx.model.core.Descriptor", "modulename": "styx.model.core", "qualname": "Descriptor", "kind": "class", "doc": "

\n"}, "styx.model.core.Descriptor.__init__": {"fullname": "styx.model.core.Descriptor.__init__", "modulename": "styx.model.core", "qualname": "Descriptor.__init__", "kind": "function", "doc": "

\n", "signature": "(\thash: str,\tname: str,\tdescription: str,\tinput_command_line_template: str,\tinputs: list[styx.model.core.InputArgument],\toutputs: list[styx.model.core.OutputArgument],\tgroup_constraints: list[styx.model.core.GroupConstraint],\tmetadata: Mapping[str, str | int | float])"}, "styx.model.core.Descriptor.hash": {"fullname": "styx.model.core.Descriptor.hash", "modulename": "styx.model.core", "qualname": "Descriptor.hash", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.name": {"fullname": "styx.model.core.Descriptor.name", "modulename": "styx.model.core", "qualname": "Descriptor.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.description": {"fullname": "styx.model.core.Descriptor.description", "modulename": "styx.model.core", "qualname": "Descriptor.description", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.input_command_line_template": {"fullname": "styx.model.core.Descriptor.input_command_line_template", "modulename": "styx.model.core", "qualname": "Descriptor.input_command_line_template", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.core.Descriptor.inputs": {"fullname": "styx.model.core.Descriptor.inputs", "modulename": "styx.model.core", "qualname": "Descriptor.inputs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.InputArgument]"}, "styx.model.core.Descriptor.outputs": {"fullname": "styx.model.core.Descriptor.outputs", "modulename": "styx.model.core", "qualname": "Descriptor.outputs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.OutputArgument]"}, "styx.model.core.Descriptor.group_constraints": {"fullname": "styx.model.core.Descriptor.group_constraints", "modulename": "styx.model.core", "qualname": "Descriptor.group_constraints", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.model.core.GroupConstraint]"}, "styx.model.core.Descriptor.metadata": {"fullname": "styx.model.core.Descriptor.metadata", "modulename": "styx.model.core", "qualname": "Descriptor.metadata", "kind": "variable", "doc": "

\n", "annotation": ": Mapping[str, str | int | float]"}, "styx.model.core.WithSymbol": {"fullname": "styx.model.core.WithSymbol", "modulename": "styx.model.core", "qualname": "WithSymbol", "kind": "class", "doc": "

\n", "bases": "typing.Generic[~T]"}, "styx.model.core.WithSymbol.__init__": {"fullname": "styx.model.core.WithSymbol.__init__", "modulename": "styx.model.core", "qualname": "WithSymbol.__init__", "kind": "function", "doc": "

\n", "signature": "(data: ~T, symbol: str)"}, "styx.model.core.WithSymbol.data": {"fullname": "styx.model.core.WithSymbol.data", "modulename": "styx.model.core", "qualname": "WithSymbol.data", "kind": "variable", "doc": "

\n", "annotation": ": ~T"}, "styx.model.core.WithSymbol.symbol": {"fullname": "styx.model.core.WithSymbol.symbol", "modulename": "styx.model.core", "qualname": "WithSymbol.symbol", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.model.from_boutiques": {"fullname": "styx.model.from_boutiques", "modulename": "styx.model.from_boutiques", "kind": "module", "doc": "

\n"}, "styx.model.from_boutiques.descriptor_from_boutiques": {"fullname": "styx.model.from_boutiques.descriptor_from_boutiques", "modulename": "styx.model.from_boutiques", "qualname": "descriptor_from_boutiques", "kind": "function", "doc": "

Convert a Boutiques tool to a Styx descriptor.

\n", "signature": "(tool: styx.boutiques.model.Tool) -> styx.model.core.Descriptor:", "funcdef": "def"}, "styx.pycodegen": {"fullname": "styx.pycodegen", "modulename": "styx.pycodegen", "kind": "module", "doc": "

Generic Python code generation utilities. Implemented on demand.

\n"}, "styx.pycodegen.core": {"fullname": "styx.pycodegen.core", "modulename": "styx.pycodegen.core", "kind": "module", "doc": "

Generic Python code generation utilities. Implemented on demand.

\n"}, "styx.pycodegen.core.LineBuffer": {"fullname": "styx.pycodegen.core.LineBuffer", "modulename": "styx.pycodegen.core", "qualname": "LineBuffer", "kind": "variable", "doc": "

\n", "default_value": "list[str]"}, "styx.pycodegen.core.INDENT": {"fullname": "styx.pycodegen.core.INDENT", "modulename": "styx.pycodegen.core", "qualname": "INDENT", "kind": "variable", "doc": "

\n", "default_value": "' '"}, "styx.pycodegen.core.indent": {"fullname": "styx.pycodegen.core.indent", "modulename": "styx.pycodegen.core", "qualname": "indent", "kind": "function", "doc": "

Indent a LineBuffer by a given level.

\n", "signature": "(lines: list[str], level: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.comment": {"fullname": "styx.pycodegen.core.comment", "modulename": "styx.pycodegen.core", "qualname": "comment", "kind": "function", "doc": "

Add a comment to a LineBuffer.

\n", "signature": "(lines: list[str]) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.collapse": {"fullname": "styx.pycodegen.core.collapse", "modulename": "styx.pycodegen.core", "qualname": "collapse", "kind": "function", "doc": "

Collapse a LineBuffer into a single string.

\n", "signature": "(lines: list[str]) -> str:", "funcdef": "def"}, "styx.pycodegen.core.expand": {"fullname": "styx.pycodegen.core.expand", "modulename": "styx.pycodegen.core", "qualname": "expand", "kind": "function", "doc": "

Expand a string into a LineBuffer.

\n", "signature": "(text: str) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.concat": {"fullname": "styx.pycodegen.core.concat", "modulename": "styx.pycodegen.core", "qualname": "concat", "kind": "function", "doc": "

Concatenate multiple LineBuffers.

\n", "signature": "(line_buffers: list[list[str]]) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.blank_before": {"fullname": "styx.pycodegen.core.blank_before", "modulename": "styx.pycodegen.core", "qualname": "blank_before", "kind": "function", "doc": "

Add blank lines at the beginning of a LineBuffer if it is not empty.

\n", "signature": "(lines: list[str], blanks: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.blank_after": {"fullname": "styx.pycodegen.core.blank_after", "modulename": "styx.pycodegen.core", "qualname": "blank_after", "kind": "function", "doc": "

Add blank lines at the end of a LineBuffer if it is not empty.

\n", "signature": "(lines: list[str], blanks: int = 1) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyGen": {"fullname": "styx.pycodegen.core.PyGen", "modulename": "styx.pycodegen.core", "qualname": "PyGen", "kind": "class", "doc": "

Helper class that provides a standard way to create an ABC using\ninheritance.

\n", "bases": "abc.ABC"}, "styx.pycodegen.core.PyGen.generate": {"fullname": "styx.pycodegen.core.PyGen.generate", "modulename": "styx.pycodegen.core", "qualname": "PyGen.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyGen.text": {"fullname": "styx.pycodegen.core.PyGen.text", "modulename": "styx.pycodegen.core", "qualname": "PyGen.text", "kind": "function", "doc": "

Generate the code and collapse it into a single string.

\n", "signature": "(self) -> str:", "funcdef": "def"}, "styx.pycodegen.core.PyArg": {"fullname": "styx.pycodegen.core.PyArg", "modulename": "styx.pycodegen.core", "qualname": "PyArg", "kind": "class", "doc": "

Python function argument.

\n"}, "styx.pycodegen.core.PyArg.__init__": {"fullname": "styx.pycodegen.core.PyArg.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyArg.__init__", "kind": "function", "doc": "

\n", "signature": "(name: str, type: str, default: str | None, docstring: str)"}, "styx.pycodegen.core.PyArg.name": {"fullname": "styx.pycodegen.core.PyArg.name", "modulename": "styx.pycodegen.core", "qualname": "PyArg.name", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyArg.type": {"fullname": "styx.pycodegen.core.PyArg.type", "modulename": "styx.pycodegen.core", "qualname": "PyArg.type", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyArg.default": {"fullname": "styx.pycodegen.core.PyArg.default", "modulename": "styx.pycodegen.core", "qualname": "PyArg.default", "kind": "variable", "doc": "

\n", "annotation": ": str | None"}, "styx.pycodegen.core.PyArg.docstring": {"fullname": "styx.pycodegen.core.PyArg.docstring", "modulename": "styx.pycodegen.core", "qualname": "PyArg.docstring", "kind": "variable", "doc": "

\n", "annotation": ": str"}, "styx.pycodegen.core.PyFunc": {"fullname": "styx.pycodegen.core.PyFunc", "modulename": "styx.pycodegen.core", "qualname": "PyFunc", "kind": "class", "doc": "

Python function.

\n", "bases": "PyGen"}, "styx.pycodegen.core.PyFunc.__init__": {"fullname": "styx.pycodegen.core.PyFunc.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.__init__", "kind": "function", "doc": "

\n", "signature": "(\tname: str = '',\targs: list[styx.pycodegen.core.PyArg] = <factory>,\tdocstring_body: str = '',\tbody: list[str] = <factory>,\treturn_descr: str = '',\treturn_type: str | None = None)"}, "styx.pycodegen.core.PyFunc.name": {"fullname": "styx.pycodegen.core.PyFunc.name", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.name", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.args": {"fullname": "styx.pycodegen.core.PyFunc.args", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.args", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.pycodegen.core.PyArg]"}, "styx.pycodegen.core.PyFunc.docstring_body": {"fullname": "styx.pycodegen.core.PyFunc.docstring_body", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.docstring_body", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.body": {"fullname": "styx.pycodegen.core.PyFunc.body", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.body", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyFunc.return_descr": {"fullname": "styx.pycodegen.core.PyFunc.return_descr", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.return_descr", "kind": "variable", "doc": "

\n", "annotation": ": str", "default_value": "''"}, "styx.pycodegen.core.PyFunc.return_type": {"fullname": "styx.pycodegen.core.PyFunc.return_type", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.return_type", "kind": "variable", "doc": "

\n", "annotation": ": str | None", "default_value": "None"}, "styx.pycodegen.core.PyFunc.generate": {"fullname": "styx.pycodegen.core.PyFunc.generate", "modulename": "styx.pycodegen.core", "qualname": "PyFunc.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.core.PyModule": {"fullname": "styx.pycodegen.core.PyModule", "modulename": "styx.pycodegen.core", "qualname": "PyModule", "kind": "class", "doc": "

Python module.

\n", "bases": "PyGen"}, "styx.pycodegen.core.PyModule.__init__": {"fullname": "styx.pycodegen.core.PyModule.__init__", "modulename": "styx.pycodegen.core", "qualname": "PyModule.__init__", "kind": "function", "doc": "

\n", "signature": "(\timports: list[str] = <factory>,\theader: list[str] = <factory>,\tfuncs: list[styx.pycodegen.core.PyFunc] = <factory>,\tfooter: list[str] = <factory>)"}, "styx.pycodegen.core.PyModule.imports": {"fullname": "styx.pycodegen.core.PyModule.imports", "modulename": "styx.pycodegen.core", "qualname": "PyModule.imports", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.header": {"fullname": "styx.pycodegen.core.PyModule.header", "modulename": "styx.pycodegen.core", "qualname": "PyModule.header", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.funcs": {"fullname": "styx.pycodegen.core.PyModule.funcs", "modulename": "styx.pycodegen.core", "qualname": "PyModule.funcs", "kind": "variable", "doc": "

\n", "annotation": ": list[styx.pycodegen.core.PyFunc]"}, "styx.pycodegen.core.PyModule.footer": {"fullname": "styx.pycodegen.core.PyModule.footer", "modulename": "styx.pycodegen.core", "qualname": "PyModule.footer", "kind": "variable", "doc": "

\n", "annotation": ": list[str]"}, "styx.pycodegen.core.PyModule.generate": {"fullname": "styx.pycodegen.core.PyModule.generate", "modulename": "styx.pycodegen.core", "qualname": "PyModule.generate", "kind": "function", "doc": "

Generate the code.

\n", "signature": "(self) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.format": {"fullname": "styx.pycodegen.format", "modulename": "styx.pycodegen.format", "kind": "module", "doc": "

Format code using ruff.

\n"}, "styx.pycodegen.format.format_code": {"fullname": "styx.pycodegen.format.format_code", "modulename": "styx.pycodegen.format", "qualname": "format_code", "kind": "function", "doc": "

Format code using ruff.

\n", "signature": "(code: str) -> str | None:", "funcdef": "def"}, "styx.pycodegen.scope": {"fullname": "styx.pycodegen.scope", "modulename": "styx.pycodegen.scope", "kind": "module", "doc": "

\n"}, "styx.pycodegen.scope.Scope": {"fullname": "styx.pycodegen.scope.Scope", "modulename": "styx.pycodegen.scope", "qualname": "Scope", "kind": "class", "doc": "

A scope for Python symbols.

\n"}, "styx.pycodegen.scope.Scope.__init__": {"fullname": "styx.pycodegen.scope.Scope.__init__", "modulename": "styx.pycodegen.scope", "qualname": "Scope.__init__", "kind": "function", "doc": "

Create a scope.

\n", "signature": "(parent: styx.pycodegen.scope.Scope | None = None)"}, "styx.pycodegen.scope.Scope.parent": {"fullname": "styx.pycodegen.scope.Scope.parent", "modulename": "styx.pycodegen.scope", "qualname": "Scope.parent", "kind": "variable", "doc": "

\n", "annotation": ": styx.pycodegen.scope.Scope | None"}, "styx.pycodegen.scope.Scope.add_or_dodge": {"fullname": "styx.pycodegen.scope.Scope.add_or_dodge", "modulename": "styx.pycodegen.scope", "qualname": "Scope.add_or_dodge", "kind": "function", "doc": "

Add a symbol to the scope, avoiding collisions.

\n", "signature": "(self, symbol: str) -> str:", "funcdef": "def"}, "styx.pycodegen.scope.Scope.add_or_die": {"fullname": "styx.pycodegen.scope.Scope.add_or_die", "modulename": "styx.pycodegen.scope", "qualname": "Scope.add_or_die", "kind": "function", "doc": "

Add a symbol to the scope.

\n", "signature": "(self, symbol: str) -> str:", "funcdef": "def"}, "styx.pycodegen.scope.Scope.python": {"fullname": "styx.pycodegen.scope.Scope.python", "modulename": "styx.pycodegen.scope", "qualname": "Scope.python", "kind": "function", "doc": "

Create a scope with all Python keywords, standard library modules, and builtins.

\n", "signature": "(cls) -> styx.pycodegen.scope.Scope:", "funcdef": "def"}, "styx.pycodegen.string_case": {"fullname": "styx.pycodegen.string_case", "modulename": "styx.pycodegen.string_case", "kind": "module", "doc": "

\n"}, "styx.pycodegen.string_case.snake_case": {"fullname": "styx.pycodegen.string_case.snake_case", "modulename": "styx.pycodegen.string_case", "qualname": "snake_case", "kind": "function", "doc": "

Converts a string to snake case.

\n\n

Consecutive uppercase letters do not receive underscores between them.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.pascal_case": {"fullname": "styx.pycodegen.string_case.pascal_case", "modulename": "styx.pycodegen.string_case", "qualname": "pascal_case", "kind": "function", "doc": "

Converts a string to pascal case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.camel_case": {"fullname": "styx.pycodegen.string_case.camel_case", "modulename": "styx.pycodegen.string_case", "qualname": "camel_case", "kind": "function", "doc": "

Converts a string to camel case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.string_case.screaming_snake_case": {"fullname": "styx.pycodegen.string_case.screaming_snake_case", "modulename": "styx.pycodegen.string_case", "qualname": "screaming_snake_case", "kind": "function", "doc": "

Converts a string to screaming snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils": {"fullname": "styx.pycodegen.utils", "modulename": "styx.pycodegen.utils", "kind": "module", "doc": "

\n"}, "styx.pycodegen.utils.ensure_python_symbol": {"fullname": "styx.pycodegen.utils.ensure_python_symbol", "modulename": "styx.pycodegen.utils", "qualname": "ensure_python_symbol", "kind": "function", "doc": "

Ensure that a string is a valid Python symbol.

\n\n
Arguments:
\n\n
    \n
  • name (str): The string to be converted.
    • \n
  • alt_prefix (str): The prefix to use if the name starts with a digit. Defaults to \"v_\".
    • \n
\n\n
Returns:
\n\n
\n

str: A valid Python symbol.

\n
\n", "signature": "(name: str, alt_prefix: str = 'v_') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_camelize": {"fullname": "styx.pycodegen.utils.python_camelize", "modulename": "styx.pycodegen.utils", "qualname": "python_camelize", "kind": "function", "doc": "

Converts a string to camel case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_pascalize": {"fullname": "styx.pycodegen.utils.python_pascalize", "modulename": "styx.pycodegen.utils", "qualname": "python_pascalize", "kind": "function", "doc": "

Converts a string to pascal case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_snakify": {"fullname": "styx.pycodegen.utils.python_snakify", "modulename": "styx.pycodegen.utils", "qualname": "python_snakify", "kind": "function", "doc": "

Converts a string to snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.python_screaming_snakify": {"fullname": "styx.pycodegen.utils.python_screaming_snakify", "modulename": "styx.pycodegen.utils", "qualname": "python_screaming_snakify", "kind": "function", "doc": "

Converts a string to screaming snake case.

\n\n
Arguments:
\n\n
    \n
  • string: The string to convert.
    • \n
\n\n
Returns:
\n\n
\n

The converted string.

\n
\n", "signature": "(string: str) -> str:", "funcdef": "def"}, "styx.pycodegen.utils.enquote": {"fullname": "styx.pycodegen.utils.enquote", "modulename": "styx.pycodegen.utils", "qualname": "enquote", "kind": "function", "doc": "

Put a string in \"quotes\".

\n", "signature": "(s: str, quote: str = '"') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.enbrace": {"fullname": "styx.pycodegen.utils.enbrace", "modulename": "styx.pycodegen.utils", "qualname": "enbrace", "kind": "function", "doc": "

Put a string in {braces}.

\n", "signature": "(s: str, brace_type: str = '{') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.as_py_literal": {"fullname": "styx.pycodegen.utils.as_py_literal", "modulename": "styx.pycodegen.utils", "qualname": "as_py_literal", "kind": "function", "doc": "

Convert an object to a Python literal expression.

\n", "signature": "(\tobj: Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[ForwardRef('_TYPE_PYLITERAL')], Mapping[str, ForwardRef('_TYPE_PYLITERAL')]]], Mapping[str, Union[str, float, int, bool, pathlib.Path, NoneType, Sequence[ForwardRef('_TYPE_PYLITERAL')], Mapping[str, ForwardRef('_TYPE_PYLITERAL')]]]],\tquote: str = '"') -> str:", "funcdef": "def"}, "styx.pycodegen.utils.linebreak_line": {"fullname": "styx.pycodegen.utils.linebreak_line", "modulename": "styx.pycodegen.utils", "qualname": "linebreak_line", "kind": "function", "doc": "

Insert linebreaks into a line of text. Breaks lines at word boundaries.

\n", "signature": "(text: str, width: int = 80) -> list[str]:", "funcdef": "def"}, "styx.pycodegen.utils.linebreak_paragraph": {"fullname": "styx.pycodegen.utils.linebreak_paragraph", "modulename": "styx.pycodegen.utils", "qualname": "linebreak_paragraph", "kind": "function", "doc": "

Insert linebreaks into a paragraph of text. Breaks lines at word boundaries.

\n", "signature": "(text: str, width: int = 80, first_line_width: int = 80) -> list[str]:", "funcdef": "def"}, "styx.runners": {"fullname": "styx.runners", "modulename": "styx.runners", "kind": "module", "doc": "

Example runners.

\n"}, "styx.runners.docker": {"fullname": "styx.runners.docker", "modulename": "styx.runners.docker", "kind": "module", "doc": "

\n"}, "styx.runners.docker.DockerExecution": {"fullname": "styx.runners.docker.DockerExecution", "modulename": "styx.runners.docker", "qualname": "DockerExecution", "kind": "class", "doc": "

Execution object used to execute commands.

\n\n

Created by Runner.start_execution().

\n", "bases": "styx.runners.styxdefs.Execution[pathlib.Path, pathlib.Path]"}, "styx.runners.docker.DockerExecution.__init__": {"fullname": "styx.runners.docker.DockerExecution.__init__", "modulename": "styx.runners.docker", "qualname": "DockerExecution.__init__", "kind": "function", "doc": "

\n", "signature": "(metadata: styx.runners.styxdefs.Metadata, output_dir: pathlib.Path)"}, "styx.runners.docker.DockerExecution.metadata": {"fullname": "styx.runners.docker.DockerExecution.metadata", "modulename": "styx.runners.docker", "qualname": "DockerExecution.metadata", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.input_files": {"fullname": "styx.runners.docker.DockerExecution.input_files", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_files", "kind": "variable", "doc": "

\n", "annotation": ": list[tuple[pathlib.Path, str]]"}, "styx.runners.docker.DockerExecution.input_file_next_id": {"fullname": "styx.runners.docker.DockerExecution.input_file_next_id", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_file_next_id", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.output_files": {"fullname": "styx.runners.docker.DockerExecution.output_files", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_files", "kind": "variable", "doc": "

\n", "annotation": ": list[tuple[pathlib.Path, str]]"}, "styx.runners.docker.DockerExecution.output_file_next_id": {"fullname": "styx.runners.docker.DockerExecution.output_file_next_id", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_file_next_id", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.output_dir": {"fullname": "styx.runners.docker.DockerExecution.output_dir", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_dir", "kind": "variable", "doc": "

\n"}, "styx.runners.docker.DockerExecution.input_file": {"fullname": "styx.runners.docker.DockerExecution.input_file", "modulename": "styx.runners.docker", "qualname": "DockerExecution.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: pathlib.Path) -> str:", "funcdef": "def"}, "styx.runners.docker.DockerExecution.output_file": {"fullname": "styx.runners.docker.DockerExecution.output_file", "modulename": "styx.runners.docker", "qualname": "DockerExecution.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> pathlib.Path:", "funcdef": "def"}, "styx.runners.docker.DockerExecution.run": {"fullname": "styx.runners.docker.DockerExecution.run", "modulename": "styx.runners.docker", "qualname": "DockerExecution.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.docker.DockerRunner": {"fullname": "styx.runners.docker.DockerRunner", "modulename": "styx.runners.docker", "qualname": "DockerRunner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "styx.runners.styxdefs.Runner[pathlib.Path, pathlib.Path]"}, "styx.runners.docker.DockerRunner.__init__": {"fullname": "styx.runners.docker.DockerRunner.__init__", "modulename": "styx.runners.docker", "qualname": "DockerRunner.__init__", "kind": "function", "doc": "

Create a new DockerRunner.

\n\n
Arguments:
\n\n
    \n
  • execution_output_dir: A function that returns the output directory for a given Metadata.\nIf None, a folder named 'output_' will be used.\nThis function is called once before every execution.
    • \n
\n", "signature": "(\texecution_output_dir: Optional[Callable[[styx.runners.styxdefs.Metadata], pathlib.Path]] = None)"}, "styx.runners.docker.DockerRunner.execution_output_dir": {"fullname": "styx.runners.docker.DockerRunner.execution_output_dir", "modulename": "styx.runners.docker", "qualname": "DockerRunner.execution_output_dir", "kind": "variable", "doc": "

\n", "annotation": ": Callable[[styx.runners.styxdefs.Metadata], pathlib.Path]"}, "styx.runners.docker.DockerRunner.start_execution": {"fullname": "styx.runners.docker.DockerRunner.start_execution", "modulename": "styx.runners.docker", "qualname": "DockerRunner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[pathlib.Path, pathlib.Path]:", "funcdef": "def"}, "styx.runners.dummy": {"fullname": "styx.runners.dummy", "modulename": "styx.runners.dummy", "kind": "module", "doc": "

\n"}, "styx.runners.dummy.DummyRunner": {"fullname": "styx.runners.dummy.DummyRunner", "modulename": "styx.runners.dummy", "qualname": "DummyRunner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "styx.runners.styxdefs.Runner[str, str], styx.runners.styxdefs.Execution[str, str]"}, "styx.runners.dummy.DummyRunner.last_cargs": {"fullname": "styx.runners.dummy.DummyRunner.last_cargs", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.last_cargs", "kind": "variable", "doc": "

\n", "annotation": ": list[str] | None"}, "styx.runners.dummy.DummyRunner.last_metadata": {"fullname": "styx.runners.dummy.DummyRunner.last_metadata", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.last_metadata", "kind": "variable", "doc": "

\n", "annotation": ": styx.runners.styxdefs.Metadata | None"}, "styx.runners.dummy.DummyRunner.start_execution": {"fullname": "styx.runners.dummy.DummyRunner.start_execution", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[str, str]:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.input_file": {"fullname": "styx.runners.dummy.DummyRunner.input_file", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: str) -> str:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.output_file": {"fullname": "styx.runners.dummy.DummyRunner.output_file", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> str:", "funcdef": "def"}, "styx.runners.dummy.DummyRunner.run": {"fullname": "styx.runners.dummy.DummyRunner.run", "modulename": "styx.runners.dummy", "qualname": "DummyRunner.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.styxdefs": {"fullname": "styx.runners.styxdefs", "modulename": "styx.runners.styxdefs", "kind": "module", "doc": "

\n"}, "styx.runners.styxdefs.P": {"fullname": "styx.runners.styxdefs.P", "modulename": "styx.runners.styxdefs", "qualname": "P", "kind": "variable", "doc": "

Input host file type.

\n", "default_value": "-P"}, "styx.runners.styxdefs.R": {"fullname": "styx.runners.styxdefs.R", "modulename": "styx.runners.styxdefs", "qualname": "R", "kind": "variable", "doc": "

Output host file type.

\n", "default_value": "+R"}, "styx.runners.styxdefs.Execution": {"fullname": "styx.runners.styxdefs.Execution", "modulename": "styx.runners.styxdefs", "qualname": "Execution", "kind": "class", "doc": "

Execution object used to execute commands.

\n\n

Created by Runner.start_execution().

\n", "bases": "typing.Protocol[-P, +R]"}, "styx.runners.styxdefs.Execution.__init__": {"fullname": "styx.runners.styxdefs.Execution.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Execution.__init__", "kind": "function", "doc": "

\n", "signature": "(*args, **kwargs)"}, "styx.runners.styxdefs.Execution.input_file": {"fullname": "styx.runners.styxdefs.Execution.input_file", "modulename": "styx.runners.styxdefs", "qualname": "Execution.input_file", "kind": "function", "doc": "

Resolve host input files.

\n\n

Returns a local filepath.\nCalled (potentially multiple times) after\nRunner.start_execution() and before Runner.run().

\n", "signature": "(self, host_file: -P) -> str:", "funcdef": "def"}, "styx.runners.styxdefs.Execution.run": {"fullname": "styx.runners.styxdefs.Execution.run", "modulename": "styx.runners.styxdefs", "qualname": "Execution.run", "kind": "function", "doc": "

Run the command.

\n\n

Called after all Execution.input_file()\nand Execution.output_file() calls.

\n", "signature": "(self, cargs: list[str]) -> None:", "funcdef": "def"}, "styx.runners.styxdefs.Execution.output_file": {"fullname": "styx.runners.styxdefs.Execution.output_file", "modulename": "styx.runners.styxdefs", "qualname": "Execution.output_file", "kind": "function", "doc": "

Resolve local output files.

\n\n

Returns a host filepath.\nCalled (potentially multiple times) after all\nRunner.input_file() calls.

\n", "signature": "(self, local_file: str, optional: bool = False) -> +R:", "funcdef": "def"}, "styx.runners.styxdefs.Metadata": {"fullname": "styx.runners.styxdefs.Metadata", "modulename": "styx.runners.styxdefs", "qualname": "Metadata", "kind": "class", "doc": "

Static tool metadata.

\n\n

This is structured static metadata that is known at compile time.\nRunners can use this to set up execution environments.

\n", "bases": "typing.NamedTuple"}, "styx.runners.styxdefs.Metadata.__init__": {"fullname": "styx.runners.styxdefs.Metadata.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.__init__", "kind": "function", "doc": "

Create new instance of Metadata(id, name, container_image_type, container_image_tag, container_image_index, container_image_opts)

\n", "signature": "(\tid: str,\tname: str,\tcontainer_image_type: str | None = None,\tcontainer_image_tag: str | None = None,\tcontainer_image_index: str | None = None,\tcontainer_image_opts: str | None = None)"}, "styx.runners.styxdefs.Metadata.id": {"fullname": "styx.runners.styxdefs.Metadata.id", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.id", "kind": "variable", "doc": "

Unique identifier of the tool.

\n", "annotation": ": str"}, "styx.runners.styxdefs.Metadata.name": {"fullname": "styx.runners.styxdefs.Metadata.name", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.name", "kind": "variable", "doc": "

Name of the tool.

\n", "annotation": ": str"}, "styx.runners.styxdefs.Metadata.container_image_type": {"fullname": "styx.runners.styxdefs.Metadata.container_image_type", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_type", "kind": "variable", "doc": "

Type of container image. Example: docker, singularity.

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_tag": {"fullname": "styx.runners.styxdefs.Metadata.container_image_tag", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_tag", "kind": "variable", "doc": "

Name of an image where the tool is installed and configured. Example: bids/mriqc.

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_index": {"fullname": "styx.runners.styxdefs.Metadata.container_image_index", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_index", "kind": "variable", "doc": "

Optional index where the image is available, if not the standard location. Example: docker.io

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Metadata.container_image_opts": {"fullname": "styx.runners.styxdefs.Metadata.container_image_opts", "modulename": "styx.runners.styxdefs", "qualname": "Metadata.container_image_opts", "kind": "variable", "doc": "

Container-level arguments for the application. Example: --privileged

\n", "annotation": ": str | None"}, "styx.runners.styxdefs.Runner": {"fullname": "styx.runners.styxdefs.Runner", "modulename": "styx.runners.styxdefs", "qualname": "Runner", "kind": "class", "doc": "

Runner object used to execute commands.

\n\n

Possible examples would be LocalRunner,\nDockerRunner, DebugRunner, ...\nUsed as a factory for Execution objects.

\n", "bases": "typing.Protocol[-P, +R]"}, "styx.runners.styxdefs.Runner.__init__": {"fullname": "styx.runners.styxdefs.Runner.__init__", "modulename": "styx.runners.styxdefs", "qualname": "Runner.__init__", "kind": "function", "doc": "

\n", "signature": "(*args, **kwargs)"}, "styx.runners.styxdefs.Runner.start_execution": {"fullname": "styx.runners.styxdefs.Runner.start_execution", "modulename": "styx.runners.styxdefs", "qualname": "Runner.start_execution", "kind": "function", "doc": "

Start an execution.

\n\n

Called before any Execution.input_file() calls.

\n", "signature": "(\tself,\tmetadata: styx.runners.styxdefs.Metadata) -> styx.runners.styxdefs.Execution[-P, +R]:", "funcdef": "def"}}, "docInfo": {"styx": {"qualname": 0, "fullname": 1, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 202}, "styx.boutiques": {"qualname": 0, "fullname": 2, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 39}, "styx.boutiques.model": {"qualname": 0, "fullname": 3, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.Type": {"qualname": 1, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 0, "bases": 2, "doc": 336}, "styx.boutiques.model.Type.docker": {"qualname": 2, "fullname": 5, "annotation": 0, "default_value": 9, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.Type.singularity": {"qualname": 2, "fullname": 5, "annotation": 0, "default_value": 9, "signature": 0, "bases": 0, "doc": 3}, "styx.boutiques.model.ContainerImageItem": 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{"styx.pycodegen.string_case.snake_case": {"tf": 1}}, "df": 1}}}}}}}}}, "q": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "s": {"docs": {"styx.pycodegen.utils.enquote": {"tf": 1}}, "df": 1}}}}}}}}}, "pipeline": ["trimmer"], "_isPrebuiltIndex": true}; // mirrored in build-search-index.js (part 1) // Also split on html tags. this is a cheap heuristic, but good enough. diff --git a/styx/boutiques/model.html b/styx/boutiques/model.html index 1c1e2ac..85b3da4 100644 --- a/styx/boutiques/model.html +++ b/styx/boutiques/model.html @@ -1452,7 +1452,7 @@

589 output_files: Optional[List[Union[OutputFiles, OutputFiles1]]] = Field(None, alias="output-files", min_length=1) 590 invocation_schema: Optional[Dict[str, Any]] = Field(None, alias="invocation-schema") 591 suggested_resources: Optional[SuggestedResources] = Field(None, alias="suggested-resources") -592 tags: Optional[Dict[str, List[str]]] = Field( +592 tags: Optional[Dict[str, Union[List[str], str]]] = Field( 593 None, 594 description="A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.", 595 ) @@ -6363,7 +6363,7 @@
Inherited Members
590 output_files: Optional[List[Union[OutputFiles, OutputFiles1]]] = Field(None, alias="output-files", min_length=1) 591 invocation_schema: Optional[Dict[str, Any]] = Field(None, alias="invocation-schema") 592 suggested_resources: Optional[SuggestedResources] = Field(None, alias="suggested-resources") -593 tags: Optional[Dict[str, List[str]]] = Field( +593 tags: Optional[Dict[str, Union[List[str], str]]] = Field( 594 None, 595 description="A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.", 596 ) @@ -6652,7 +6652,7 @@
Attributes:
- tags: Optional[Dict[str, List[str]]] + tags: Optional[Dict[str, Union[str, List[str]]]]
@@ -6687,7 +6687,7 @@
Attributes:
model_fields = - {'name': FieldInfo(annotation=str, required=True, description='Tool name.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'tool_version': FieldInfo(annotation=str, required=True, alias='tool-version', alias_priority=2, description='Tool version.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=str, required=True, description='Tool description.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'deprecated_by_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], bool, NoneType], required=False, alias='deprecated-by-doi', alias_priority=2, description="doi of the tool that deprecates the current one. May be set to 'true' if the current tool is deprecated but no specific tool deprecates it."), 'author': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool author name(s).'), 'url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool URL.'), 'descriptor_url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='descriptor-url', alias_priority=2, description='Link to the descriptor itself (e.g. the GitHub repo where it is hosted).'), 'doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='DOI of the descriptor (not of the tool itself).'), 'shell': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Absolute path of the shell interpreter to use in the container (defaults to /bin/sh).'), 'tool_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='tool-doi', alias_priority=2, description='DOI of the tool (not of the descriptor).'), 'command_line': FieldInfo(annotation=str, required=True, alias='command-line', alias_priority=2, description='A string that describes the tool command line, where input and output values are identified by "keys". At runtime, command-line keys are substituted with flags and values.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'container_image': FieldInfo(annotation=Union[ContainerImage, NoneType], required=False, alias='container-image', alias_priority=2), 'schema_version': FieldInfo(annotation=SchemaVersion, required=True, alias='schema-version', alias_priority=2, description='Version of the schema used.'), 'environment_variables': FieldInfo(annotation=Union[List[EnvironmentVariable], NoneType], required=False, alias='environment-variables', alias_priority=2, description='An array of key-value pairs specifying environment variable names and their values to be used in the execution environment.', metadata=[MinLen(min_length=1)]), 'groups': FieldInfo(annotation=Union[List[Group], NoneType], required=False, description='Sets of identifiers of inputs, each specifying an input group.', metadata=[MinLen(min_length=1)]), 'inputs': FieldInfo(annotation=List[Union[Inputs, Inputs1]], required=True, metadata=[MinLen(min_length=1)]), 'tests': FieldInfo(annotation=Union[List[Test], NoneType], required=False, metadata=[MinLen(min_length=1)]), 'online_platform_urls': FieldInfo(annotation=Union[List[Annotated[str, StringConstraints]], NoneType], required=False, alias='online-platform-urls', alias_priority=2, description='Online platform URLs from which the tool can be executed.'), 'output_files': FieldInfo(annotation=Union[List[Union[OutputFiles, OutputFiles1]], NoneType], required=False, alias='output-files', alias_priority=2, metadata=[MinLen(min_length=1)]), 'invocation_schema': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='invocation-schema', alias_priority=2), 'suggested_resources': FieldInfo(annotation=Union[SuggestedResources, NoneType], required=False, alias='suggested-resources', alias_priority=2), 'tags': FieldInfo(annotation=Union[Dict[str, List[str]], NoneType], required=False, description='A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.'), 'error_codes': FieldInfo(annotation=Union[List[ErrorCode], NoneType], required=False, alias='error-codes', alias_priority=2, description='An array of key-value pairs specifying exit codes and their description. Can be used for tools to specify the meaning of particular exit codes. Exit code 0 is assumed to indicate a successful execution.', metadata=[MinLen(min_length=1)]), 'custom': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False)} + {'name': FieldInfo(annotation=str, required=True, description='Tool name.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'tool_version': FieldInfo(annotation=str, required=True, alias='tool-version', alias_priority=2, description='Tool version.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'description': FieldInfo(annotation=str, required=True, description='Tool description.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'deprecated_by_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], bool, NoneType], required=False, alias='deprecated-by-doi', alias_priority=2, description="doi of the tool that deprecates the current one. May be set to 'true' if the current tool is deprecated but no specific tool deprecates it."), 'author': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool author name(s).'), 'url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Tool URL.'), 'descriptor_url': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='descriptor-url', alias_priority=2, description='Link to the descriptor itself (e.g. the GitHub repo where it is hosted).'), 'doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='DOI of the descriptor (not of the tool itself).'), 'shell': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, description='Absolute path of the shell interpreter to use in the container (defaults to /bin/sh).'), 'tool_doi': FieldInfo(annotation=Union[Annotated[str, StringConstraints], NoneType], required=False, alias='tool-doi', alias_priority=2, description='DOI of the tool (not of the descriptor).'), 'command_line': FieldInfo(annotation=str, required=True, alias='command-line', alias_priority=2, description='A string that describes the tool command line, where input and output values are identified by "keys". At runtime, command-line keys are substituted with flags and values.', metadata=[StringConstraints(strip_whitespace=None, to_upper=None, to_lower=None, strict=None, min_length=1, max_length=None, pattern=None)]), 'container_image': FieldInfo(annotation=Union[ContainerImage, NoneType], required=False, alias='container-image', alias_priority=2), 'schema_version': FieldInfo(annotation=SchemaVersion, required=True, alias='schema-version', alias_priority=2, description='Version of the schema used.'), 'environment_variables': FieldInfo(annotation=Union[List[EnvironmentVariable], NoneType], required=False, alias='environment-variables', alias_priority=2, description='An array of key-value pairs specifying environment variable names and their values to be used in the execution environment.', metadata=[MinLen(min_length=1)]), 'groups': FieldInfo(annotation=Union[List[Group], NoneType], required=False, description='Sets of identifiers of inputs, each specifying an input group.', metadata=[MinLen(min_length=1)]), 'inputs': FieldInfo(annotation=List[Union[Inputs, Inputs1]], required=True, metadata=[MinLen(min_length=1)]), 'tests': FieldInfo(annotation=Union[List[Test], NoneType], required=False, metadata=[MinLen(min_length=1)]), 'online_platform_urls': FieldInfo(annotation=Union[List[Annotated[str, StringConstraints]], NoneType], required=False, alias='online-platform-urls', alias_priority=2, description='Online platform URLs from which the tool can be executed.'), 'output_files': FieldInfo(annotation=Union[List[Union[OutputFiles, OutputFiles1]], NoneType], required=False, alias='output-files', alias_priority=2, metadata=[MinLen(min_length=1)]), 'invocation_schema': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False, alias='invocation-schema', alias_priority=2), 'suggested_resources': FieldInfo(annotation=Union[SuggestedResources, NoneType], required=False, alias='suggested-resources', alias_priority=2), 'tags': FieldInfo(annotation=Union[Dict[str, Union[str, List[str]]], NoneType], required=False, description='A set of key-value pairs specifying tags describing the pipeline. The tag names are open, they might be more constrained in the future.'), 'error_codes': FieldInfo(annotation=Union[List[ErrorCode], NoneType], required=False, alias='error-codes', alias_priority=2, description='An array of key-value pairs specifying exit codes and their description. Can be used for tools to specify the meaning of particular exit codes. Exit code 0 is assumed to indicate a successful execution.', metadata=[MinLen(min_length=1)]), 'custom': FieldInfo(annotation=Union[Dict[str, Any], NoneType], required=False)}
diff --git a/styx/compiler/compile/constraints.html b/styx/compiler/compile/constraints.html index 2db575a..ea21e46 100644 --- a/styx/compiler/compile/constraints.html +++ b/styx/compiler/compile/constraints.html @@ -285,15 +285,13 @@

223 func: PyFunc, 224 descriptor: Descriptor, 225 inputs: list[WithSymbol[InputArgument]], -226) -> None: -227 # Lookup input from symbol -228 inputs_lookup_symbol = {a.symbol: a for a in inputs} -229 -230 for arg in inputs: -231 generate_input_constraint_validation(func.body, arg) -232 -233 for group_constraint in descriptor.group_constraints: -234 generate_group_constraint_validation(func.body, group_constraint, inputs_lookup_symbol) +226 inputs_lookup_bt_name: dict[str, WithSymbol[InputArgument]], +227) -> None: +228 for arg in inputs: +229 generate_input_constraint_validation(func.body, arg) +230 +231 for group_constraint in descriptor.group_constraints: +232 generate_group_constraint_validation(func.body, group_constraint, inputs_lookup_bt_name)

@@ -532,7 +530,7 @@

def - generate_constraint_checks( func: styx.pycodegen.core.PyFunc, descriptor: styx.model.core.Descriptor, inputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None: + generate_constraint_checks( func: styx.pycodegen.core.PyFunc, descriptor: styx.model.core.Descriptor, inputs: list[styx.model.core.WithSymbol[styx.model.core.InputArgument]], inputs_lookup_bt_name: dict[str, styx.model.core.WithSymbol[styx.model.core.InputArgument]]) -> None: @@ -542,15 +540,13 @@

224 func: PyFunc, 225 descriptor: Descriptor, 226 inputs: list[WithSymbol[InputArgument]], -227) -> None: -228 # Lookup input from symbol -229 inputs_lookup_symbol = {a.symbol: a for a in inputs} -230 -231 for arg in inputs: -232 generate_input_constraint_validation(func.body, arg) -233 -234 for group_constraint in descriptor.group_constraints: -235 generate_group_constraint_validation(func.body, group_constraint, inputs_lookup_symbol) +227 inputs_lookup_bt_name: dict[str, WithSymbol[InputArgument]], +228) -> None: +229 for arg in inputs: +230 generate_input_constraint_validation(func.body, arg) +231 +232 for group_constraint in descriptor.group_constraints: +233 generate_group_constraint_validation(func.body, group_constraint, inputs_lookup_bt_name)

diff --git a/styx/compiler/compile/descriptor.html b/styx/compiler/compile/descriptor.html index 70e3148..4da0e66 100644 --- a/styx/compiler/compile/descriptor.html +++ b/styx/compiler/compile/descriptor.html @@ -105,66 +105,69 @@

49 50 # Input symbols 51 inputs: list[WithSymbol[InputArgument]] = [] - 52 for input_ in descriptor.inputs: - 53 py_symbol = scopes.function.add_or_dodge(python_snakify(input_.name)) - 54 inputs.append(WithSymbol(input_, py_symbol)) - 55 - 56 # Output symbols - 57 outputs: list[WithSymbol[OutputArgument]] = [] - 58 for output in descriptor.outputs: - 59 py_symbol = scopes.output_tuple.add_or_dodge(python_snakify(output.name)) - 60 outputs.append(WithSymbol(output, py_symbol)) - 61 - 62 # --- Code generation --- - 63 - 64 module = PyModule() - 65 module.imports.extend(["import typing"]) - 66 func = PyFunc( - 67 name=symbols.function, - 68 return_type=f"{symbols.output_class}[R]", - 69 return_descr=f"NamedTuple of outputs " f"(described in `{symbols.output_class}`).", - 70 docstring_body=descriptor.description, - 71 ) - 72 module.funcs.append(func) - 73 - 74 # Function arguments - 75 func.args.append(PyArg(name="runner", type="Runner[P, R]", default=None, docstring="Command runner")) - 76 func.args.extend(build_input_arguments(inputs)) - 77 - 78 # Constraint checking - 79 generate_constraint_checks(func, descriptor, inputs) + 52 inputs_lookup_bt_name: dict[str, WithSymbol[InputArgument]] = {} + 53 for input_ in descriptor.inputs: + 54 py_symbol = scopes.function.add_or_dodge(python_snakify(input_.name)) + 55 input_with_symbol = WithSymbol(input_, py_symbol) + 56 inputs.append(input_with_symbol) + 57 inputs_lookup_bt_name[input_.name] = input_with_symbol + 58 + 59 # Output symbols + 60 outputs: list[WithSymbol[OutputArgument]] = [] + 61 for output in descriptor.outputs: + 62 py_symbol = scopes.output_tuple.add_or_dodge(python_snakify(output.name)) + 63 outputs.append(WithSymbol(output, py_symbol)) + 64 + 65 # --- Code generation --- + 66 + 67 module = PyModule() + 68 module.imports.extend(["import typing"]) + 69 func = PyFunc( + 70 name=symbols.function, + 71 return_type=f"{symbols.output_class}[R]", + 72 return_descr=f"NamedTuple of outputs " f"(described in `{symbols.output_class}`).", + 73 docstring_body=descriptor.description, + 74 ) + 75 module.funcs.append(func) + 76 + 77 # Function arguments + 78 func.args.append(PyArg(name="runner", type="Runner[P, R]", default=None, docstring="Command runner")) + 79 func.args.extend(build_input_arguments(inputs)) 80 - 81 # Function body - 82 func.body.extend([ - 83 f"{symbols.execution} = {symbols.runner}.start_execution({symbols.metadata})", - 84 f"{symbols.cargs} = []", - 85 ]) - 86 - 87 # Command line args building - 88 generate_command_line_args_building(descriptor, symbols, func, inputs) + 81 # Constraint checking + 82 generate_constraint_checks(func, descriptor, inputs, inputs_lookup_bt_name) + 83 + 84 # Function body + 85 func.body.extend([ + 86 f"{symbols.execution} = {symbols.runner}.start_execution({symbols.metadata})", + 87 f"{symbols.cargs} = []", + 88 ]) 89 - 90 # Definitions - 91 generate_definitions(module, settings) - 92 module.header.extend(["", ""]) # Two blank lines - 93 - 94 # Static metadata - 95 generate_static_metadata(module, descriptor, symbols) + 90 # Command line args building + 91 generate_command_line_args_building(descriptor, symbols, func, inputs) + 92 + 93 # Definitions + 94 generate_definitions(module, settings) + 95 module.header.extend(["", ""]) # Two blank lines 96 - 97 # Outputs static definition - 98 generate_outputs_definition(module, symbols, outputs) - 99 # Outputs building code -100 generate_output_building(func, scopes, symbols, outputs, inputs) -101 -102 # Function body: Run and return -103 func.body.extend([ -104 f"{symbols.execution}.run({symbols.cargs})", -105 f"return {symbols.ret}", -106 ]) -107 -108 # --- Return code --- -109 -110 module.imports.sort() -111 return module.text() + 97 # Static metadata + 98 generate_static_metadata(module, descriptor, symbols) + 99 +100 # Outputs static definition +101 generate_outputs_definition(module, symbols, outputs) +102 # Outputs building code +103 generate_output_building(func, scopes, symbols, outputs, inputs) +104 +105 # Function body: Run and return +106 func.body.extend([ +107 f"{symbols.execution}.run({symbols.cargs})", +108 f"return {symbols.ret}", +109 ]) +110 +111 # --- Return code --- +112 +113 module.imports.sort() +114 return module.text() @@ -214,66 +217,69 @@

50 51 # Input symbols 52 inputs: list[WithSymbol[InputArgument]] = [] - 53 for input_ in descriptor.inputs: - 54 py_symbol = scopes.function.add_or_dodge(python_snakify(input_.name)) - 55 inputs.append(WithSymbol(input_, py_symbol)) - 56 - 57 # Output symbols - 58 outputs: list[WithSymbol[OutputArgument]] = [] - 59 for output in descriptor.outputs: - 60 py_symbol = scopes.output_tuple.add_or_dodge(python_snakify(output.name)) - 61 outputs.append(WithSymbol(output, py_symbol)) - 62 - 63 # --- Code generation --- - 64 - 65 module = PyModule() - 66 module.imports.extend(["import typing"]) - 67 func = PyFunc( - 68 name=symbols.function, - 69 return_type=f"{symbols.output_class}[R]", - 70 return_descr=f"NamedTuple of outputs " f"(described in `{symbols.output_class}`).", - 71 docstring_body=descriptor.description, - 72 ) - 73 module.funcs.append(func) - 74 - 75 # Function arguments - 76 func.args.append(PyArg(name="runner", type="Runner[P, R]", default=None, docstring="Command runner")) - 77 func.args.extend(build_input_arguments(inputs)) - 78 - 79 # Constraint checking - 80 generate_constraint_checks(func, descriptor, inputs) + 53 inputs_lookup_bt_name: dict[str, WithSymbol[InputArgument]] = {} + 54 for input_ in descriptor.inputs: + 55 py_symbol = scopes.function.add_or_dodge(python_snakify(input_.name)) + 56 input_with_symbol = WithSymbol(input_, py_symbol) + 57 inputs.append(input_with_symbol) + 58 inputs_lookup_bt_name[input_.name] = input_with_symbol + 59 + 60 # Output symbols + 61 outputs: list[WithSymbol[OutputArgument]] = [] + 62 for output in descriptor.outputs: + 63 py_symbol = scopes.output_tuple.add_or_dodge(python_snakify(output.name)) + 64 outputs.append(WithSymbol(output, py_symbol)) + 65 + 66 # --- Code generation --- + 67 + 68 module = PyModule() + 69 module.imports.extend(["import typing"]) + 70 func = PyFunc( + 71 name=symbols.function, + 72 return_type=f"{symbols.output_class}[R]", + 73 return_descr=f"NamedTuple of outputs " f"(described in `{symbols.output_class}`).", + 74 docstring_body=descriptor.description, + 75 ) + 76 module.funcs.append(func) + 77 + 78 # Function arguments + 79 func.args.append(PyArg(name="runner", type="Runner[P, R]", default=None, docstring="Command runner")) + 80 func.args.extend(build_input_arguments(inputs)) 81 - 82 # Function body - 83 func.body.extend([ - 84 f"{symbols.execution} = {symbols.runner}.start_execution({symbols.metadata})", - 85 f"{symbols.cargs} = []", - 86 ]) - 87 - 88 # Command line args building - 89 generate_command_line_args_building(descriptor, symbols, func, inputs) + 82 # Constraint checking + 83 generate_constraint_checks(func, descriptor, inputs, inputs_lookup_bt_name) + 84 + 85 # Function body + 86 func.body.extend([ + 87 f"{symbols.execution} = {symbols.runner}.start_execution({symbols.metadata})", + 88 f"{symbols.cargs} = []", + 89 ]) 90 - 91 # Definitions - 92 generate_definitions(module, settings) - 93 module.header.extend(["", ""]) # Two blank lines - 94 - 95 # Static metadata - 96 generate_static_metadata(module, descriptor, symbols) + 91 # Command line args building + 92 generate_command_line_args_building(descriptor, symbols, func, inputs) + 93 + 94 # Definitions + 95 generate_definitions(module, settings) + 96 module.header.extend(["", ""]) # Two blank lines 97 - 98 # Outputs static definition - 99 generate_outputs_definition(module, symbols, outputs) -100 # Outputs building code -101 generate_output_building(func, scopes, symbols, outputs, inputs) -102 -103 # Function body: Run and return -104 func.body.extend([ -105 f"{symbols.execution}.run({symbols.cargs})", -106 f"return {symbols.ret}", -107 ]) -108 -109 # --- Return code --- -110 -111 module.imports.sort() -112 return module.text() + 98 # Static metadata + 99 generate_static_metadata(module, descriptor, symbols) +100 +101 # Outputs static definition +102 generate_outputs_definition(module, symbols, outputs) +103 # Outputs building code +104 generate_output_building(func, scopes, symbols, outputs, inputs) +105 +106 # Function body: Run and return +107 func.body.extend([ +108 f"{symbols.execution}.run({symbols.cargs})", +109 f"return {symbols.ret}", +110 ]) +111 +112 # --- Return code --- +113 +114 module.imports.sort() +115 return module.text() diff --git a/styx/main.html b/styx/main.html index 2ee5d6c..8162f27 100644 --- a/styx/main.html +++ b/styx/main.html @@ -173,24 +173,29 @@

111 112 with open(json_path, "r", encoding="utf-8") as json_file: 113 json_data = json.load(json_file) -114 -115 code = compile_boutiques_dict(json_data, settings) +114 try: +115 code = compile_boutiques_dict(json_data, settings) 116 -117 if settings.output_path: -118 output_path = settings.output_path / pathlib.Path(*output_module_path) -119 output_path.mkdir(parents=True, exist_ok=True) -120 output_path = output_path / output_file_name -121 with open(output_path, "w") as py_file: -122 py_file.write(code) -123 print(f"Compiled {json_path} to {output_path}") -124 else: -125 print(f"Compiled {json_path} -> {pathlib.Path(*output_module_path) / output_file_name}: {'---' * 10}") -126 print(code) -127 print("---" * 10) -128 -129 -130if __name__ == "__main__": -131 main() +117 if settings.output_path: +118 output_path = settings.output_path / pathlib.Path(*output_module_path) +119 output_path.mkdir(parents=True, exist_ok=True) +120 output_path = output_path / output_file_name +121 with open(output_path, "w") as py_file: +122 py_file.write(code) +123 print(f"Compiled {json_path} to {output_path}") +124 else: +125 print(f"Compiled {json_path} -> {pathlib.Path(*output_module_path) / output_file_name}: {'---' * 10}") +126 print(code) +127 print("---" * 10) +128 except Exception: +129 print(f"Skipped: {json_path}") +130 import traceback +131 +132 print(traceback.format_exc()) +133 +134 +135if __name__ == "__main__": +136 main() @@ -342,20 +347,25 @@

112 113 with open(json_path, "r", encoding="utf-8") as json_file: 114 json_data = json.load(json_file) -115 -116 code = compile_boutiques_dict(json_data, settings) +115 try: +116 code = compile_boutiques_dict(json_data, settings) 117 -118 if settings.output_path: -119 output_path = settings.output_path / pathlib.Path(*output_module_path) -120 output_path.mkdir(parents=True, exist_ok=True) -121 output_path = output_path / output_file_name -122 with open(output_path, "w") as py_file: -123 py_file.write(code) -124 print(f"Compiled {json_path} to {output_path}") -125 else: -126 print(f"Compiled {json_path} -> {pathlib.Path(*output_module_path) / output_file_name}: {'---' * 10}") -127 print(code) -128 print("---" * 10) +118 if settings.output_path: +119 output_path = settings.output_path / pathlib.Path(*output_module_path) +120 output_path.mkdir(parents=True, exist_ok=True) +121 output_path = output_path / output_file_name +122 with open(output_path, "w") as py_file: +123 py_file.write(code) +124 print(f"Compiled {json_path} to {output_path}") +125 else: +126 print(f"Compiled {json_path} -> {pathlib.Path(*output_module_path) / output_file_name}: {'---' * 10}") +127 print(code) +128 print("---" * 10) +129 except Exception: +130 print(f"Skipped: {json_path}") +131 import traceback +132 +133 print(traceback.format_exc())