From f694812d588b0656c1c9425b0e35c0212d197f0e Mon Sep 17 00:00:00 2001 From: weiglszonja Date: Tue, 24 Oct 2023 17:32:33 +0200 Subject: [PATCH 1/2] remove ignore_timestamps_errors flag --- src/tye_lab_to_nwb/ast_ecephys/convert_session.py | 5 ----- 1 file changed, 5 deletions(-) diff --git a/src/tye_lab_to_nwb/ast_ecephys/convert_session.py b/src/tye_lab_to_nwb/ast_ecephys/convert_session.py index 1267a5e..d08cb64 100644 --- a/src/tye_lab_to_nwb/ast_ecephys/convert_session.py +++ b/src/tye_lab_to_nwb/ast_ecephys/convert_session.py @@ -3,9 +3,6 @@ from typing import Optional, Dict from warnings import warn -from importlib.metadata import version -from packaging.version import Version - from nwbinspector import inspect_nwb from nwbinspector.inspector_tools import format_messages, save_report @@ -63,8 +60,6 @@ def session_to_nwb( # Add Recording recording_source_data = dict(folder_path=str(ecephys_recording_folder_path), stream_name="Signals CH") - if Version(version("neo")) > Version("0.12.0"): - recording_source_data.update(ignore_timestamps_errors=True) source_data.update(dict(Recording=recording_source_data)) conversion_options.update(dict(Recording=dict(stub_test=stub_test))) From 18487f1ea7a3199de3d929e091d0fc5023029ca9 Mon Sep 17 00:00:00 2001 From: weiglszonja Date: Tue, 24 Oct 2023 17:35:34 +0200 Subject: [PATCH 2/2] remove ignore_timestamps_errors flag --- .../neurotensin_valence_convert_session.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/src/tye_lab_to_nwb/neurotensin_valence/neurotensin_valence_convert_session.py b/src/tye_lab_to_nwb/neurotensin_valence/neurotensin_valence_convert_session.py index 57a3a18..543c993 100644 --- a/src/tye_lab_to_nwb/neurotensin_valence/neurotensin_valence_convert_session.py +++ b/src/tye_lab_to_nwb/neurotensin_valence/neurotensin_valence_convert_session.py @@ -1,6 +1,5 @@ """Primary script to run to convert an entire session for of data using the NWBConverter.""" import traceback -from importlib.metadata import version from pathlib import Path from typing import Optional, Dict from warnings import warn @@ -15,7 +14,6 @@ ) from nwbinspector import inspect_nwbfile from nwbinspector.inspector_tools import save_report, format_messages -from packaging.version import Version from tye_lab_to_nwb.neurotensin_valence import NeurotensinValenceNWBConverter @@ -74,8 +72,6 @@ def session_to_nwb( # Add Recording if ecephys_recording_folder_path: recording_source_data = dict(folder_path=str(ecephys_recording_folder_path), stream_name="Signals CH") - if Version(version("neo")) > Version("0.12.0"): - recording_source_data.update(ignore_timestamps_errors=True) source_data.update(dict(Recording=recording_source_data)) conversion_options.update(dict(Recording=dict(stub_test=stub_test)))